View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_low_15 (Length: 463)
Name: NF6277_low_15
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 10 - 356
Target Start/End: Complemental strand, 10195209 - 10194863
Alignment:
| Q |
10 |
attatacttatgttatgaaagtcaatttgtaatgtgtggtgtagtcatttttctggaactaccgacgtgcaggaagctgttgctgtaaccactgcaatac |
109 |
Q |
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| T |
10195209 |
attatacttatgttatgaaagtcaatttgttatgtgtggtgttgtcatttttcttgaactaccgacgtgcaggaagctgttgctgtaaccactgcaatac |
10195110 |
T |
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| Q |
110 |
aggaagaaatttttctggagatgggtgttggtatgttttttgtactgatatatatccgttattggtgtgtgtatctatagataggatatttcttttttag |
209 |
Q |
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| T |
10195109 |
aggaagaaatttttctggagatgggtgttggtatgttttttgtactgatatatatcctttattggtgtgtgtatctatagataggatatttcttttttag |
10195010 |
T |
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| Q |
210 |
cagttaaaaagatatacagatgataaaattttgaactggtcattgatggattgtgatgtagtattaggtttttgaggcaacaaactgagttatagcagcc |
309 |
Q |
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| T |
10195009 |
cagttaaatagatatacagatgataaaattttgaactggtcattgatggattgtgatgtagtatttggtttttgaggcaacaaactgagttatagcagcc |
10194910 |
T |
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| Q |
310 |
tcttaaaggcttacaaacctcccctttatgttgtatctgcattgact |
356 |
Q |
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| T |
10194909 |
tcttaaagtcttacaaacctcctctttatgttgtatctgcattgact |
10194863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 382 - 446
Target Start/End: Complemental strand, 10194717 - 10194653
Alignment:
| Q |
382 |
tattggggtactctgcattactgtagaagctcaaatttatttatgtgaagctttattgtagttca |
446 |
Q |
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| T |
10194717 |
tattggtgtactctgcattagtgtagaagctcaaatttatttatgtgaagctttattgtagttca |
10194653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 263 - 351
Target Start/End: Original strand, 19458868 - 19458956
Alignment:
| Q |
263 |
tgatgtagtattaggtttttgaggcaacaaactgagttatagcagcctcttaaaggcttacaaacctcccctttatgttgtatctgcat |
351 |
Q |
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| T |
19458868 |
tgatgtagtgttaggtttttgagttcacagactgagttatagcagcctcttaaaggcttacaagcctcccctttttattgtatctgcat |
19458956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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