View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6277_low_19 (Length: 432)

Name: NF6277_low_19
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6277_low_19
NF6277_low_19
[»] chr5 (5 HSPs)
chr5 (14-247)||(7303084-7303317)
chr5 (14-247)||(16444868-16445101)
chr5 (292-424)||(7302907-7303039)
chr5 (292-424)||(16445142-16445274)
chr5 (106-243)||(40288294-40288431)
[»] chr4 (2 HSPs)
chr4 (14-247)||(6123262-6123495)
chr4 (292-424)||(6123085-6123217)
[»] chr6 (2 HSPs)
chr6 (106-243)||(4201891-4202028)
chr6 (106-243)||(24741091-24741228)
[»] chr8 (1 HSPs)
chr8 (106-243)||(25997359-25997496)
[»] chr7 (3 HSPs)
chr7 (106-242)||(10369642-10369778)
chr7 (310-411)||(10369864-10369971)
chr7 (30-96)||(10369459-10369525)


Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 247
Target Start/End: Complemental strand, 7303317 - 7303084
Alignment:
Q  14 attttaactttaatactactacaccactttatttgaatcttcttcaatacaaccagcaatattaatatctcaagtttaactttagcaacgttatatctca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7303317 attttaactttaatactactacaccactttatttgaatcttcttcaatacaaccagcaatattaatatctcaagtttaactttagcaacgttatatctca 7303218  T
Q  114 aacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcacccatatcttcatcttcttcaccaaataagtcatgcatgtcttcat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7303217 aacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcacccatatcttcatcttcttcaccaaataagtcatgcatgtcttcat 7303118  T
Q  214 ctccaccatttatatcatcttgggtccctggaac 247  Q
    ||||||||||||||||||||||||||||||||||    
T  7303117 ctccaccatttatatcatcttgggtccctggaac 7303084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 247
Target Start/End: Original strand, 16444868 - 16445101
Alignment:
Q  14 attttaactttaatactactacaccactttatttgaatcttcttcaatacaaccagcaatattaatatctcaagtttaactttagcaacgttatatctca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16444868 attttaactttaatactactacaccactttatttgaatcttcttcaatacaaccagcaatattaatatctcaagtttaactttagcaacgttatatctca 16444967  T
Q  114 aacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcacccatatcttcatcttcttcaccaaataagtcatgcatgtcttcat 213  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16444968 aacaatgatgtataatagtttgaatcaattgtctcaccttcatttaatgcatcacccatatcttcatcttcttcaccaaataagtcatgcatgtcttcat 16445067  T
Q  214 ctccaccatttatatcatcttgggtccctggaac 247  Q
    ||||||||||||||||||||||||||||||||||    
T  16445068 ctccaccatttatatcatcttgggtccctggaac 16445101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 292 - 424
Target Start/End: Complemental strand, 7303039 - 7302907
Alignment:
Q  292 ctcatttgaattaatttcaatgaaactaactaacttacctatatcatcagcttcacttccaaagatatcatgaatgttgttgtctaaaccatggccaccg 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7303039 ctcatttgaattaatttcaatgaaactaactaacttacctatatcatcagcttcacttccaaagatatcatgaatgttgttgtctaaaccatggccacca 7302940  T
Q  392 gtgacattttcaacatcatttccgcattcatct 424  Q
    |||||||||||||||||||||||||||||||||    
T  7302939 gtgacattttcaacatcatttccgcattcatct 7302907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 292 - 424
Target Start/End: Original strand, 16445142 - 16445274
Alignment:
Q  292 ctcatttgaattaatttcaatgaaactaactaacttacctatatcatcagcttcacttccaaagatatcatgaatgttgttgtctaaaccatggccaccg 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16445142 ctcatttgaattaatttcaatgaaactaactaacttacctatatcatcagcttcacttccaaagatatcatgaatgttgttgtctaaaccatggccacca 16445241  T
Q  392 gtgacattttcaacatcatttccgcattcatct 424  Q
    |||||||||||||||||||||||||||||||||    
T  16445242 gtgacattttcaacatcatttccgcattcatct 16445274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 106 - 243
Target Start/End: Original strand, 40288294 - 40288431
Alignment:
Q  106 atatctcaaacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcacccatatcttcatcttcttcaccaaataagtcatgcat 205  Q
    ||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| || || |||||||||||||||||||| ||||||||||  |||    
T  40288294 atatctcaaacaatggtgtgtaatagtttgaattagttgtctcaccttcatttaatgtataactcatatcttcatcttcttcactaaataagtcacccat 40288393  T
Q  206 gtcttcatctccaccatttatatcatcttgggtccctg 243  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  40288394 gtcttcatcttcaccatttgtatcatcttgggtccctg 40288431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 247
Target Start/End: Complemental strand, 6123495 - 6123262
Alignment:
Q  14 attttaactttaatactactacaccactttatttgaatcttcttcaatacaaccagcaatattaatatctcaagtttaactttagcaacgttatatctca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6123495 attttaactttaatactactacaccactttatttgaatcttcttcaatacaaccagcaatattaatatctcaagtttaactttagcaacgttatatctca 6123396  T
Q  114 aacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcacccatatcttcatcttcttcaccaaataagtcatgcatgtcttcat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6123395 aacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcacccatatcttcatcttcttcaccaaataagtcatgcatgtcttcat 6123296  T
Q  214 ctccaccatttatatcatcttgggtccctggaac 247  Q
    ||||||||||||||||||||||||||||||||||    
T  6123295 ctccaccatttatatcatcttgggtccctggaac 6123262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 292 - 424
Target Start/End: Complemental strand, 6123217 - 6123085
Alignment:
Q  292 ctcatttgaattaatttcaatgaaactaactaacttacctatatcatcagcttcacttccaaagatatcatgaatgttgttgtctaaaccatggccaccg 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6123217 ctcatttgaattaatttcaatgaaactaactaacttacctatatcatcagcttcacttccaaagatatcatgaatgttgttgtctaaaccatggccacca 6123118  T
Q  392 gtgacattttcaacatcatttccgcattcatct 424  Q
    |||||||||||||||||||||||||||||||||    
T  6123117 gtgacattttcaacatcatttccgcattcatct 6123085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 106 - 243
Target Start/End: Complemental strand, 4202028 - 4201891
Alignment:
Q  106 atatctcaaacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcacccatatcttcatcttcttcaccaaataagtcatgcat 205  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||  |||    
T  4202028 atatctcaaacaatggtgtgtaatagtttgaattaattgtctcaccttcatttaatgtataacccatatcttcatcttcttcactaaataagtcacccat 4201929  T
Q  206 gtcttcatctccaccatttatatcatcttgggtccctg 243  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  4201928 gtcttcatcttcaccatttgtatcatcttgggtccctg 4201891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 106 - 243
Target Start/End: Complemental strand, 24741228 - 24741091
Alignment:
Q  106 atatctcaaacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcacccatatcttcatcttcttcaccaaataagtcatgcat 205  Q
    ||||||||||||||||||| ||||||||||||| |  |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||  |||    
T  24741228 atatctcaaacaatggtgtgtaatagtttgaattagctgtctcaccttcatttaatgtataacccatatcttcatcttcttcactaaataagtcacccat 24741129  T
Q  206 gtcttcatctccaccatttatatcatcttgggtccctg 243  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  24741128 gtcttcatcttcaccatttgtatcatcttgggtccctg 24741091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 106 - 243
Target Start/End: Original strand, 25997359 - 25997496
Alignment:
Q  106 atatctcaaacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcacccatatcttcatcttcttcaccaaataagtcatgcat 205  Q
    ||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||  |||    
T  25997359 atatctcaaacaatggtgtgtaatagtttgaattagttgtctcaccttcatttaatgtataacccatatcttcatcttcttcactaaataagtcacccat 25997458  T
Q  206 gtcttcatctccaccatttatatcatcttgggtccctg 243  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  25997459 gtcttcatcttcaccatttgtatcatcttgggtccctg 25997496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 9e-43; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 106 - 242
Target Start/End: Original strand, 10369642 - 10369778
Alignment:
Q  106 atatctcaaacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcacccatatcttcatcttcttcaccaaataagtcatgcat 205  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||||||   ||    
T  10369642 atatcttaaacaatggtgtataatagtttgaataaattgtctcaccttcatttaatgtataacccatatcttcatattcttcactaaataagtcacatat 10369741  T
Q  206 gtcttcatctccaccatttatatcatcttgggtccct 242  Q
    |||||||| |||||||||| ||||||||| |||||||    
T  10369742 gtcttcatgtccaccatttgtatcatctttggtccct 10369778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 310 - 411
Target Start/End: Original strand, 10369864 - 10369971
Alignment:
Q  310 aatgaaactaactaacttacct------atatcatcagcttcacttccaaagatatcatgaatgttgttgtctaaaccatggccaccggtgacattttca 403  Q
    ||||||||||||||||||||||      ||||||||||||||| ||||||| | ||||||||||||| ||||||||||| ||||||| ||||||||||||    
T  10369864 aatgaaactaactaacttacctctaaatatatcatcagcttcatttccaaataaatcatgaatgttgatgtctaaaccacggccaccagtgacattttca 10369963  T
Q  404 acatcatt 411  Q
    ||||||||    
T  10369964 acatcatt 10369971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 10369459 - 10369525
Alignment:
Q  30 tactacaccactttatttgaatcttcttcaatacaaccagcaatattaatatctcaagtttaacttt 96  Q
    |||||||||| ||||||| ||||||||| |||||| | |||||| ||||||||||||| | ||||||    
T  10369459 tactacaccagtttattttaatcttctttaatacagcaagcaatgttaatatctcaagctaaacttt 10369525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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