View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_low_21 (Length: 417)
Name: NF6277_low_21
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 37 - 403
Target Start/End: Original strand, 20123126 - 20123489
Alignment:
| Q |
37 |
ctaaccgaacaattctatatgaatggcaacatgaagtatggtagcgccattgttattgatagcaatattgatatcagatttgaaaaattgatgtaggtaa |
136 |
Q |
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||||||||||| |||| ||||||||||||| ||||| |||||||| ||| |||||||||||||||| ||||||||||| |||||| |||||||||||| |
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| T |
20123126 |
ctaaccgaacatttctctatgaatggcaacgtgaagaatggtagcaccaacgttattgatagcaatagtgatatcagatgggaaaaaatgatgtaggtaa |
20123225 |
T |
|
| Q |
137 |
ataaaggtctcttcattgcgtacaagcacagcagaaaagagtggtgtttctccctttgtattttttactttaatcaaatccttcctttcaccatattttc |
236 |
Q |
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| |||||||| || || |||| ||||||||||| |||| ||||||||||||||||||| ||| ||||||| |||||||| |||||||||||||||||||| |
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| T |
20123226 |
agaaaggtctttttatggcgtgcaagcacagcacaaaaaagtggtgtttctccctttgcattgtttacttgaatcaaatgcttcctttcaccatattttc |
20123325 |
T |
|
| Q |
237 |
caatgatacattgacacttacttgtgaatcctctatatgctgcaaggtgaagaggagtatcacctctttcagtctttatttcaaaaccactttgatcatt |
336 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20123326 |
caatgatacattgacacatacttttgaatcctctatatgctgcaaggtgaagaggagtatcacctctttcagtctttatttcaaaaccactttgatcatc |
20123425 |
T |
|
| Q |
337 |
atgcttctttactattacatctacaagacgttttacaatgtcttcgttgtcaatgcttattgccaca |
403 |
Q |
| |
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||| |||||||||| |||||||||||||||||||| ||||||||||| || |||||| ||||||| |
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| T |
20123426 |
atg---ctttactattgcatctacaagacgttttacactgtcttcgttggcattgcttactgccaca |
20123489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 57 - 385
Target Start/End: Complemental strand, 19896675 - 19896344
Alignment:
| Q |
57 |
gaatggcaacatgaagtatggtagcgccattgttattgatagcaatattgatatcagatttgaaaaattgatgtaggtaaataaaggtctcttcatt--- |
153 |
Q |
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| T |
19896675 |
gaatggcaacgtgaagaatggtagcaccaacgttattgatagcaatactggtatcagatgggaaaaaatgatgtaggtaaagaaaggtctttttatttat |
19896576 |
T |
|
| Q |
154 |
gcgtacaagcacagcagaaaagagtggtgtttctccctttgtattttttactttaatcaaatccttcctttcaccatattttccaatgatacattgacac |
253 |
Q |
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|| | ||||||||| | ||||||||||||||||||||||| ||||| || ||||||||| |||||||||||||| ||||||||||||||||| |||| |
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| T |
19896575 |
gcctgcaagcacagtacaaaagagtggtgtttctcccttttcattttggtctctaatcaaatgcttcctttcaccattttttccaatgatacattcacac |
19896476 |
T |
|
| Q |
254 |
ttacttgtgaatcctctatatgctgcaaggtgaagaggagtatcacctctttcagtctttatttcaaaaccactttgatcattatgcttctttactatta |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
19896475 |
atacttgtgaatcctctatatgctgcaaggtgaagaggagtatcacctttttcagtctttatttccaaaccactttgatcattatgcttctttactatta |
19896376 |
T |
|
| Q |
354 |
catctacaagacgttttacaatgtcttcgttg |
385 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
19896375 |
catctacaagacgttttacaatgtcttcgttg |
19896344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 37 - 385
Target Start/End: Original strand, 20089270 - 20089615
Alignment:
| Q |
37 |
ctaaccgaacaattctatatgaatggcaacatgaagtatggtagcgccattgttattgatagcaatattgatatcagatttgaaaaattgatgtaggtaa |
136 |
Q |
| |
|
||||||||||| |||| ||||||| ||||| ||||| ||| || | | || ||||||||||||||||||| |||| | ||||||| |||||||| ||| |
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| T |
20089270 |
ctaaccgaacatttctctatgaattgcaacgtgaaggatgttatcacgatctttattgatagcaatattgagatcatttgtgaaaaactgatgtagataa |
20089369 |
T |
|
| Q |
137 |
ataaaggtctcttcattgcgtacaagcacagcagaaaagagtggtgtttctccctttgtattttttactttaatcaaatccttcctttcaccatattttc |
236 |
Q |
| |
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|||||||||| || || |||| ||||||||||| |||| ||||||||||||||||||| ||| ||||||| |||||||| |||||||||||||| ||||| |
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| T |
20089370 |
ataaaggtctttttatggcgtgcaagcacagcacaaaaaagtggtgtttctccctttgcattgtttacttgaatcaaatgcttcctttcaccattttttc |
20089469 |
T |
|
| Q |
237 |
caatgatacattgacacttacttgtgaatcctctatatgctgcaaggtgaagaggagtatcacctctttcagtctttatttcaaaaccactttgatcatt |
336 |
Q |
| |
|
|||||||||||| |||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20089470 |
caatgatacattcacacatacttttgaatcctctatatgctgcaagatgaagaggagtatcacctctttcagtctttatttcaaaaccactttgatcatc |
20089569 |
T |
|
| Q |
337 |
atgcttctttactattacatctacaagacgttttacaatgtcttcgttg |
385 |
Q |
| |
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||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
20089570 |
atg---ctttactattgcatctacaagacgttttacaatgtcttcgttg |
20089615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 312
Target Start/End: Original strand, 20143444 - 20143548
Alignment:
| Q |
208 |
aatcaaatccttcctttcaccatattttccaatgatacattgacacttacttgtgaatcctctatatgctgcaaggtgaagaggagtatcacctctttca |
307 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||| |||||||||| ||| || | |||||||||| ||||||||||||| | |||||| |||||| ||||| |
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| T |
20143444 |
aatcaaatcctttctttcaccacattctcctatgatacattcacatatatctttgaatcctcttgatgctgcaaggtgcaaaggagtgtcacctttttca |
20143543 |
T |
|
| Q |
308 |
gtctt |
312 |
Q |
| |
|
|||| |
|
|
| T |
20143544 |
ttctt |
20143548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 312
Target Start/End: Complemental strand, 23269745 - 23269641
Alignment:
| Q |
208 |
aatcaaatccttcctttcaccatattttccaatgatacattgacacttacttgtgaatcctctatatgctgcaaggtgaagaggagtatcacctctttca |
307 |
Q |
| |
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|||||||||||| ||||||||| || ||| |||||||||| ||| || | |||||||||| ||||||||||||| | |||||| |||||| ||||| |
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| T |
23269745 |
aatcaaatcctttctttcaccaccttctcctatgatacattcacatatatctttgaatcctcttgatgctgcaaggtgcaaaggagtgtcacctttttca |
23269646 |
T |
|
| Q |
308 |
gtctt |
312 |
Q |
| |
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|||| |
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|
| T |
23269645 |
ttctt |
23269641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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