View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6277_low_24 (Length: 406)
Name: NF6277_low_24
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 17 - 401
Target Start/End: Complemental strand, 39602867 - 39602478
Alignment:
| Q |
17 |
catctttacctaattgaagttttatatctttgattgatttaatagtattccatttcatctactacaattgtctctgaaatggtgagatactagttctaaa |
116 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| ||||||| ||||||||||||| ||| |||||||| |||||||||| |
|
|
| T |
39602867 |
catctttacctaattgaagttttctatctttgatttatttaatagcattccatatcatctagtacaattgtctctaaaaaggtgagatgttagttctaaa |
39602768 |
T |
|
| Q |
117 |
ttttaatccatgttatttaatttttcaatgagtttatcgtctagtattcactttagaacatgatttgaaggctgtctctgttatgtgtaggatattgtgg |
216 |
Q |
| |
|
||| ||||||||||||||| ||||||||| ||||||| || |||| || |||||||||||||||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
39602767 |
tttgaatccatgttatttattttttcaataagtttattgtttagtgtttgatttagaacatgatttgaaggttgtctttgtta--tgtaggatattgtgt |
39602670 |
T |
|
| Q |
217 |
tttaaaggctgattggctttagttggtatgca--------aggatattcttgctaggtgttcaatatcaaccacttgcttttaaggtttggttatttgag |
308 |
Q |
| |
|
||| |||||||| || |||||||||||||||| ||||||| |||||| |||||||||||| ||||| ||||||||||| ||||||||| |
|
|
| T |
39602669 |
tttgaaggctgactgactttagttggtatgcaaggataataggatatcacacctaggtattcaatatcaactacttg--tttaaggtttgattatttgag |
39602572 |
T |
|
| Q |
309 |
catgaaatcatgttcttagaataacataagttt-atgtctaaacaaggataagagtgattgtgaattctttacttcatttgcattcatctcact |
401 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
39602571 |
catgaaatcatgttagtagaataacattagtttaatgtctaaacaaggatatgagtgattgtgaattttttacttcctttgcattcatgtcact |
39602478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 17 - 401
Target Start/End: Complemental strand, 21827029 - 21826640
Alignment:
| Q |
17 |
catctttacctaattgaagttttatatctttgattgatttaatagtattccatttcatctactacaattgtctctgaaatggtgagatactagttctaaa |
116 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| ||||||| ||||||||||||| ||| |||||||| |||||||||| |
|
|
| T |
21827029 |
catctttacctaattgaagttttctatctttgatttatttaatagcattccatatcatctagtacaattgtctctaaaaaggtgagatgttagttctaaa |
21826930 |
T |
|
| Q |
117 |
ttttaatccatgttatttaatttttcaatgagtttatcgtctagtattcactttagaacatgatttgaaggctgtctctgttatgtgtaggatattgtgg |
216 |
Q |
| |
|
||| ||||||||||||||| ||||||||| ||||||| || |||| || |||||||||||||||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
21826929 |
tttgaatccatgttatttattttttcaataagtttattgtttagtgtttgatttagaacatgatttgaaggttgtctttgtta--tgtaggatattgtgt |
21826832 |
T |
|
| Q |
217 |
tttaaaggctgattggctttagttggtatgca--------aggatattcttgctaggtgttcaatatcaaccacttgcttttaaggtttggttatttgag |
308 |
Q |
| |
|
||| |||||||| || |||||||||||||||| ||||||| |||||| |||||||| ||| |||| ||||||||||||||||||||| |
|
|
| T |
21826831 |
tttgaaggctgactgactttagttggtatgcaaggataataggatatcacacctaggtattcaatatgaactactt--atttaaggtttggttatttgag |
21826734 |
T |
|
| Q |
309 |
catgaaatcatgttcttagaataacataagttt-atgtctaaacaaggataagagtgattgtgaattctttacttcatttgcattcatctcact |
401 |
Q |
| |
|
||||||||| | || ||||||||||| ||||| ||||||||||||||||| ||||||||||||||| ||||||| | ||||||||| ||||| |
|
|
| T |
21826733 |
catgaaatcgtattagtagaataacattagtttaatgtctaaacaaggatatgagtgattgtgaattttttacttactctgcattcatgtcact |
21826640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 63 - 201
Target Start/End: Original strand, 38414711 - 38414849
Alignment:
| Q |
63 |
attccatttcatctactacaattgtctctgaaatggtgagatactagttctaaattttaatccatgttatttaatttttcaatgagtttatcgtctagta |
162 |
Q |
| |
|
||||| ||||||||| |||||||||||| |||| |||||| |||||||||||||||||| ||||||||||||| |||||||||| ||||||||| ||||| |
|
|
| T |
38414711 |
attccttttcatctagtacaattgtctcagaaaaggtgagctactagttctaaattttattccatgttatttattttttcaatgtgtttatcgtttagta |
38414810 |
T |
|
| Q |
163 |
ttcactttagaacatgatttgaaggctgtctctgttatg |
201 |
Q |
| |
|
||| || | ||||||||||||||||||||| ||||||| |
|
|
| T |
38414811 |
ttcgattcaaaacatgatttgaaggctgtctttgttatg |
38414849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 50 - 165
Target Start/End: Original strand, 9010205 - 9010320
Alignment:
| Q |
50 |
ttgatttaatagtattccatttcatctactacaattgtctctgaaatggtgagatactagttctaaattttaatccatgttatttaatttttcaatgagt |
149 |
Q |
| |
|
|||||||||| | || || ||||||||| || | |||||||||||| |||||| ||||| ||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
9010205 |
ttgatttaattgcataccttttcatctagtatagttgtctctgaaaaggtgagctactacttctaaattttaatccatgatatttaatttttcaatgtgt |
9010304 |
T |
|
| Q |
150 |
ttatcgtctagtattc |
165 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
9010305 |
ttatcgtttagtattc |
9010320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 281 - 340
Target Start/End: Original strand, 9010472 - 9010531
Alignment:
| Q |
281 |
acttgcttttaaggtttggttatttgagcatgaaatcatgttcttagaataacataagtt |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||| |
|
|
| T |
9010472 |
acttgcttttaaggtttggttatttgagcatgcaatcatgttattggaataacataagtt |
9010531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 276 - 395
Target Start/End: Complemental strand, 11198014 - 11197895
Alignment:
| Q |
276 |
caaccacttgcttttaaggtttggttatttgagcatgaaatcatgttcttagaataacataagtttatgtctaaacaaggataagagtgattgtgaattc |
375 |
Q |
| |
|
|||| ||||||||||| | ||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||| | || |
|
|
| T |
11198014 |
caactacttgcttttacgatttggttatttgagcatgaaaccatgttagtagaataacataagtctatgtctaaacaaggataagagtgattgtaagatc |
11197915 |
T |
|
| Q |
376 |
tttacttcatttgcattcat |
395 |
Q |
| |
|
||| |||| ||||||||||| |
|
|
| T |
11197914 |
tttgcttcttttgcattcat |
11197895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University