View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_low_30 (Length: 362)
Name: NF6277_low_30
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 13 - 347
Target Start/End: Complemental strand, 47184013 - 47183679
Alignment:
| Q |
13 |
aaggtaaatggttttaggtattatggagttttggtcataagataaataaaatttgaacatagattgatctagttagaatttgatctcaagttaccaatat |
112 |
Q |
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| T |
47184013 |
aaggtaaatggttttaggtattatggagttttggtcataagataaataaaatttgaacatagattgatctagttagaatttgatctcaagttaccaatat |
47183914 |
T |
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| Q |
113 |
cataagaacgtataaatacaaaatcagaacaaaaacctttagaataaggcaatataaatgtacctgaaataccaatatcatacccaaacataagaccacc |
212 |
Q |
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| T |
47183913 |
cataagaacgtataagtacaaaatcagaacaaaaacctttagaataaggctatataaatgtacctgaaataccaatatcataaccaaacataagaccacc |
47183814 |
T |
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| Q |
213 |
gaaagcagccataatgcaagatactatgacggctggtgtgatcttcgcctcaaaaattacgtcacttgaacccgttgtaaatcctccaccagccatgctt |
312 |
Q |
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| T |
47183813 |
gaaagcagccataatgcaagatactatgacggctggtgtgatcttcgcctcaaaaattacatcacttgaacccgttgtaaatcctccaccagccatgctt |
47183714 |
T |
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| Q |
313 |
attggcaaaaatgttcacgtaaggaatgttgttgc |
347 |
Q |
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| T |
47183713 |
attggcaaaaatgttcacgtaaggaatgttgttgc |
47183679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 169 - 324
Target Start/End: Complemental strand, 47196745 - 47196590
Alignment:
| Q |
169 |
aatgtacctgaaataccaatatcatacccaaacataagaccaccgaaagcagccataatgcaagatactatgacggctggtgtgatcttcgcctcaaaaa |
268 |
Q |
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| T |
47196745 |
aatgtacctgaaataccaacatcataaccaaacataagaccaccagtagcagccatgatgcaagagatcacaacagctgctgtgatcctagcctcaaaaa |
47196646 |
T |
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| Q |
269 |
ttacgtcacttgaacccgttgtaaatcctccaccagccatgcttattggcaaaaat |
324 |
Q |
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| T |
47196645 |
cgacgtcacttgaacccgttgtaaatcctccaccagccatgtttattggctaaaat |
47196590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 751491 - 751544
Alignment:
| Q |
174 |
acctgaaataccaatatcatacccaaacataagaccaccgaaagcagccataat |
227 |
Q |
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| T |
751491 |
acctgaaacaccaacatcataaccgaacataagaccaccggtagcagccataat |
751544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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