View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6277_low_31 (Length: 356)
Name: NF6277_low_31
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_31 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 4 - 356
Target Start/End: Original strand, 26414002 - 26414351
Alignment:
| Q |
4 |
ggaggagcagagagaagcatcaagnnnnnnnttcagacttgaggattatcgtatggcacaggctgcaggttctataattagctatggacatagcagcaga |
103 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26414002 |
ggaggaacagagagaagcatcaagaaaaaaattcagacttgaggattatcgtatggcacaggctgcaggttctataattagctatggacatagcagcaga |
26414101 |
T |
|
| Q |
104 |
ttcggattgtctgggatctgcctaaagcgcgatatgggttaaattagtcaccggtggggctagcagaggctatgaaccaatcaatacattgtacacccca |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26414102 |
ttcggattgtctgggatctgcctaaagcgcgatataggttaaattagtcaccggtggggctagcagaggctatgaaccaatcaatacattgtacacccca |
26414201 |
T |
|
| Q |
204 |
aacatatcagctacgaaccaaaatgaaaatcatctgcattaatttaacacagtatcatagttcttgtcatttcttaaattaataataaaaatacatattt |
303 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26414202 |
aacatatgagctacgaaccaaaatgaaaatcatctgcattaatttaacacagtatcatagttcttgtcatttcttaaat---taataaaaatacatattt |
26414298 |
T |
|
| Q |
304 |
gcatgagtgcaaagatatatacaccgcaaaatcaaaggtagtgataggaaaag |
356 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26414299 |
gcatcagtgcaaagatatatacaccgcaaaatcaaaggtagtgataggaaaag |
26414351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 178 - 343
Target Start/End: Complemental strand, 27986795 - 27986634
Alignment:
| Q |
178 |
aaccaatcaatacattgtacaccccaaacatatcagctacgaaccaaaatgaaaatcatctgcattaatttaacacagtatcatagttcttgtcatttct |
277 |
Q |
| |
|
|||||||||||||||||||| | |||||| |||||||| ||||||||||||||||||| ||||||| | || |||| ||||||||| || ||| |
|
|
| T |
27986795 |
aaccaatcaatacattgtacgcaacaaacagatcagctaagaaccaaaatgaaaatcatttgcattaggt---gggaggatcacagttcttgtaatgtct |
27986699 |
T |
|
| Q |
278 |
taaattaataataaaaatacatatttgcatgagtgcaaag--atatatacaccgcaaaatcaaaggta |
343 |
Q |
| |
|
||||| ||||||||||||||||||| || ||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
27986698 |
taaat---taataaaaatacatatttgtataagtgcaaagatatatatacaccgcaaaatctaaggta |
27986634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 178 - 343
Target Start/End: Complemental strand, 28073327 - 28073166
Alignment:
| Q |
178 |
aaccaatcaatacattgtacaccccaaacatatcagctacgaaccaaaatgaaaatcatctgcattaatttaacacagtatcatagttcttgtcatttct |
277 |
Q |
| |
|
|||||||||||||||||||| | |||||| |||||||| ||||||||||||||||||| ||||||| | || |||| ||||||||| || ||| |
|
|
| T |
28073327 |
aaccaatcaatacattgtacgcaacaaacagatcagctaagaaccaaaatgaaaatcatttgcattaggt---gggaggatcacagttcttgtaatgtct |
28073231 |
T |
|
| Q |
278 |
taaattaataataaaaatacatatttgcatgagtgcaaag--atatatacaccgcaaaatcaaaggta |
343 |
Q |
| |
|
||||| ||||||||||||||||||| || ||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
28073230 |
taaat---taataaaaatacatatttgtataagtgcaaagatatatatacaccgcaaaatctaaggta |
28073166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 129
Target Start/End: Original strand, 1536650 - 1536743
Alignment:
| Q |
37 |
cagacttgaggattatcgtatggcacaggctgcaggttctataattagctatggacata-gcagcagattcggattgtctgggatctgcctaaa |
129 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||| ||||||||||| |||||| ||||| ||||| |||| ||||||| ||||||| |
|
|
| T |
1536650 |
cagacttgaggattattatatggcacaggcggcaggttccataattagctacagacataggcagcctattcgaattgattgggatccgcctaaa |
1536743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 3417101 - 3417170
Alignment:
| Q |
254 |
agtatcatagttcttgtcatttcttaaattaataataaaaatacatatttgcatgagtgcaaagatatatac |
325 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||| || |||||| |||||||| |
|
|
| T |
3417101 |
agtagcatagttcttgtcatttcttaaattaata--aaaaatacatatttgtatagatgcaaatatatatac |
3417170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 288
Target Start/End: Complemental strand, 22022602 - 22022568
Alignment:
| Q |
254 |
agtatcatagttcttgtcatttcttaaattaataa |
288 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
22022602 |
agtagcatagttcttgtcatttcttaaattaataa |
22022568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 44472579 - 44472549
Alignment:
| Q |
218 |
gaaccaaaatgaaaatcatctgcattaattt |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
44472579 |
gaaccaaaatgaaaatcatctgcattaattt |
44472549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 44472527 - 44472480
Alignment:
| Q |
254 |
agtatcatagttcttgtcatttcttaaattaataataaaaatacatatttg |
304 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44472527 |
agtagcatggttcttgtcatttcttaaatta---ataaaaatacatatttg |
44472480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 6507907 - 6507954
Alignment:
| Q |
254 |
agtatcatagttcttgtcatttcttaaattaataataaaaatacatatttg |
304 |
Q |
| |
|
|||| ||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6507907 |
agtagcatggttcttgtcatttcttaaat---taataaaaatacatatttg |
6507954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University