View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_low_34 (Length: 349)
Name: NF6277_low_34
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 339
Target Start/End: Complemental strand, 21298159 - 21297838
Alignment:
| Q |
17 |
agttttgcaggaattctatacttgtttccaggcgtttcttgctgcggctgatgcttttctggtataattaatgcaatggaagatggatgcttcacggata |
116 |
Q |
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| T |
21298159 |
agttttgcaagaattctatgcttgtttccaa-cgtttcttgctgcggctgatgcttttctggtataattaatgcaaaggaagatggatgcttcacggata |
21298061 |
T |
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| Q |
117 |
caggtgcttaatatcgtgttggaattcaatgagttgcagcctgctatcttgttataggaatgcttctgtaatactatttaatatcttccttgaccttgtt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21298060 |
caggtgcttaatatcgtgttggaattcaatgagttgcagcctgctatcttgttataggaatgcttctgtaatactatttaatatcttccttgaccttgtt |
21297961 |
T |
|
| Q |
217 |
tctgaagatgaaacaaacatggtttataaaaatacaaagaatttggtttttggtctgtagttagagtttagctataatccaacatattaatagcagttta |
316 |
Q |
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| T |
21297960 |
tctgaagatgaaacaaacatggtttataaaaatacaaagaatttggtttttggtctgtagttagagtttagctataatccaacatattaatagcagttta |
21297861 |
T |
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| Q |
317 |
tgcataaatcagaactatctctg |
339 |
Q |
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| T |
21297860 |
tgcataaatcagaactatctctg |
21297838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 334
Target Start/End: Complemental strand, 21264051 - 21263989
Alignment:
| Q |
272 |
tgtagttagagtttagctataatccaacatattaatagcagtttatgcataaatcagaactat |
334 |
Q |
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| T |
21264051 |
tgtagttagaacttagctataatccaacatattaatagcattttatgaattaatcagaactat |
21263989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 334
Target Start/End: Complemental strand, 33722830 - 33722788
Alignment:
| Q |
292 |
aatccaacatattaatagcagtttatgcataaatcagaactat |
334 |
Q |
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| T |
33722830 |
aatccaacatattaatatcattttatgcattaatcagaactat |
33722788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 5284408 - 5284364
Alignment:
| Q |
297 |
aacatattaatagcagtttatgcataaatcagaactatctctgct |
341 |
Q |
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| T |
5284408 |
aacatattaatagcattttatgcattaatcagaactatttctgct |
5284364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 334
Target Start/End: Original strand, 15124393 - 15124481
Alignment:
| Q |
247 |
aatacaaagaatttggtt-tttggtctgtagttagagtttagctataatccaacatattaatagcagtttatgcataaatcagaactat |
334 |
Q |
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| T |
15124393 |
aatacaaagagtttggttctttggtctatagttagatcatacctaaaagaaaacatattaatagcattttatgcattaatcagaactat |
15124481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 334
Target Start/End: Complemental strand, 14951273 - 14951186
Alignment:
| Q |
248 |
atacaaagaatttggtt-tttggtctgtagttagagtttagctataatccaacatattaatagcagtttatgcataaatcagaactat |
334 |
Q |
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|||| |||| ||||||| |||||||| |||||||| ||| ||| || ||||||||||||||| ||||||||| |||||||||||| |
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| T |
14951273 |
atacgaagagtttggttctttggtctatagttagatcttacctaaaagaaaacatattaatagcattttatgcattaatcagaactat |
14951186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 15124308 - 15124346
Alignment:
| Q |
210 |
ccttgtttctgaagatgaaacaaacatggtttataaaaa |
248 |
Q |
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| T |
15124308 |
ccttgtttctgaagatgaagcaaacatggcttataaaaa |
15124346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 5305195 - 5305232
Alignment:
| Q |
297 |
aacatattaatagcagtttatgcataaatcagaactat |
334 |
Q |
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||||||||||||||| ||||||||| |||||||||||| |
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| T |
5305195 |
aacatattaatagcattttatgcattaatcagaactat |
5305232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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