View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6277_low_35 (Length: 347)

Name: NF6277_low_35
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6277_low_35
NF6277_low_35
[»] chr8 (14 HSPs)
chr8 (1-338)||(7960853-7961193)
chr8 (143-243)||(8084171-8084270)
chr8 (143-230)||(5675997-5676083)
chr8 (190-244)||(16962233-16962287)
chr8 (13-71)||(34236693-34236751)
chr8 (119-248)||(16050068-16050196)
chr8 (156-235)||(26208202-26208281)
chr8 (31-86)||(28213384-28213439)
chr8 (119-218)||(37868500-37868598)
chr8 (31-89)||(29907789-29907847)
chr8 (29-86)||(3961460-3961517)
chr8 (178-243)||(6463002-6463067)
chr8 (201-242)||(10615154-10615195)
chr8 (145-249)||(31197653-31197755)
[»] chr3 (7 HSPs)
chr3 (124-249)||(4155362-4155486)
chr3 (151-244)||(12930076-12930169)
chr3 (1-86)||(30179741-30179826)
chr3 (145-244)||(20303328-20303426)
chr3 (36-85)||(46794021-46794070)
chr3 (184-244)||(16926930-16926990)
chr3 (144-220)||(35018542-35018617)
[»] chr2 (14 HSPs)
chr2 (40-185)||(10523119-10523265)
chr2 (145-246)||(13210567-13210668)
chr2 (135-243)||(93287-93394)
chr2 (135-249)||(36352092-36352205)
chr2 (135-219)||(11099535-11099619)
chr2 (101-244)||(28407691-28407834)
chr2 (32-85)||(10522986-10523039)
chr2 (96-248)||(38629880-38630032)
chr2 (13-60)||(9927903-9927950)
chr2 (145-220)||(40149179-40149253)
chr2 (156-245)||(15124737-15124825)
chr2 (157-218)||(19571148-19571209)
chr2 (184-248)||(27897587-27897651)
chr2 (208-248)||(30701130-30701170)
[»] chr4 (18 HSPs)
chr4 (101-240)||(40716519-40716658)
chr4 (101-248)||(9685437-9685583)
chr4 (101-244)||(12869162-12869304)
chr4 (145-244)||(22822393-22822492)
chr4 (149-244)||(35788702-35788797)
chr4 (145-249)||(40717384-40717487)
chr4 (124-248)||(53814851-53814974)
chr4 (109-241)||(53828430-53828561)
chr4 (101-171)||(2516082-2516152)
chr4 (145-219)||(30530105-30530178)
chr4 (40-220)||(4464362-4464542)
chr4 (145-242)||(35819071-35819167)
chr4 (13-86)||(44118904-44118977)
chr4 (36-89)||(44249076-44249129)
chr4 (35-87)||(41037090-41037142)
chr4 (157-227)||(40965125-40965195)
chr4 (13-81)||(400610-400678)
chr4 (1-53)||(36685908-36685960)
[»] chr6 (8 HSPs)
chr6 (150-248)||(9705059-9705157)
chr6 (143-248)||(8001490-8001595)
chr6 (143-219)||(6054237-6054312)
chr6 (172-220)||(31729367-31729415)
chr6 (145-244)||(11085624-11085722)
chr6 (135-244)||(30256621-30256729)
chr6 (191-244)||(33631793-33631846)
chr6 (31-71)||(6543006-6543046)
[»] chr7 (13 HSPs)
chr7 (135-244)||(25620179-25620287)
chr7 (101-248)||(2544348-2544492)
chr7 (149-248)||(26239862-26239961)
chr7 (135-217)||(30727287-30727369)
chr7 (135-240)||(1596640-1596744)
chr7 (145-248)||(28080703-28080805)
chr7 (135-241)||(18826421-18826526)
chr7 (143-221)||(36993249-36993326)
chr7 (159-233)||(44342885-44342959)
chr7 (138-241)||(21821852-21821954)
chr7 (102-241)||(40746311-40746449)
chr7 (13-66)||(4454762-4454815)
chr7 (39-87)||(4507727-4507775)
[»] chr5 (18 HSPs)
chr5 (135-244)||(41666925-41667034)
chr5 (135-244)||(24270038-24270146)
chr5 (135-244)||(24346669-24346778)
chr5 (101-240)||(6637648-6637788)
chr5 (135-243)||(15480366-15480473)
chr5 (143-244)||(9368638-9368738)
chr5 (145-248)||(25258244-25258346)
chr5 (145-248)||(25322034-25322136)
chr5 (143-241)||(17352610-17352706)
chr5 (13-59)||(37656982-37657028)
chr5 (13-60)||(18333510-18333557)
chr5 (145-248)||(32908895-32908997)
chr5 (13-86)||(1564612-1564685)
chr5 (151-248)||(2063683-2063779)
chr5 (109-174)||(19522199-19522264)
chr5 (13-89)||(15438840-15438916)
chr5 (135-211)||(17150401-17150476)
chr5 (135-219)||(35167562-35167646)
[»] chr1 (15 HSPs)
chr1 (145-244)||(26176951-26177049)
chr1 (36-132)||(7652239-7652334)
chr1 (150-241)||(5109296-5109386)
chr1 (136-219)||(16163001-16163083)
chr1 (145-240)||(35892103-35892197)
chr1 (145-248)||(38733190-38733292)
chr1 (157-241)||(8870865-8870948)
chr1 (31-86)||(22100048-22100103)
chr1 (103-174)||(25137438-25137509)
chr1 (150-220)||(5953684-5953754)
chr1 (157-219)||(16706914-16706975)
chr1 (135-233)||(27413401-27413498)
chr1 (13-65)||(7826076-7826128)
chr1 (22-86)||(17468310-17468374)
chr1 (152-212)||(44254138-44254198)
[»] scaffold0692 (1 HSPs)
scaffold0692 (145-244)||(5697-5795)
[»] scaffold0024 (1 HSPs)
scaffold0024 (201-248)||(89551-89598)


Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 7961193 - 7960853
Alignment:
Q  1 acaaaattgacctgtgaagtaaggattactcccatttataaacacattgtcagaccatctattatcggatgcaagactctttaacacactcctcttgttt 100  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  7961193 acaaaattgacctctgaagtaaatattactcccatttataaacacattatcagaccatctattatcggatgcgagactctttaacacactcctctcgttt 7961094  T
Q  101 aggattggacatctcaagcgtgtacataaacgacgggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgata-- 198  Q
    ||||||||||||||||||||||||||||||| | ||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||| |||||||      
T  7961093 aggattggacatctcaagcgtgtacataaacaatgggtggctcgatagcggaaacctggtagcatgtggcccaacgaatcttggaagagattctgatata 7960994  T
Q  199 -taatcttaaaaattgtggttggacttaacgcaaccccgcaaaaccgactttatggtgagaagcctaagcttctattgtgtacgatgggtgcccagatac 297  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7960993 ataatcttaaaaattgtggttggacttaacgcaaccccgcaaaaccgactttatggtgagaagcctaagcttctattgtgtacgatgggtgcccagatac 7960894  T
Q  298 taatatacaataatacaatatacttgaacaccaattttctt 338  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7960893 taatatacaataatacaatatacttgaacaccaattttctt 7960853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 143 - 243
Target Start/End: Complemental strand, 8084270 - 8084171
Alignment:
Q  143 caatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaac 242  Q
    |||||||| ||| ||||||||||||||||||| | ||||||| |||| ||||||||  |||||| |||| ||||||||   |||| |||| |||||||||    
T  8084270 caatagcgaaaacctgatagcatgtggcccaatggatcttgg-agaggctctgataccatcttagaaatcgtggttgggtctaacacaactccgcaaaac 8084172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 5675997 - 5676083
Alignment:
Q  143 caatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgca 230  Q
    ||||| || ||| ||||||||| |||||| |  |||||||| ||||||||||||||| |||||| |||| |||||||||| |||||||    
T  5675997 caatatcgaaaacctgatagcaggtggcctagtgaatcttg-aagagactctgatatcatcttagaaatcgtggttggacctaacgca 5676083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 16962233 - 16962287
Alignment:
Q  190 actctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaaccg 244  Q
    ||||||||| ||||||||||||||||||||||| |||| ||| ||| ||||||||    
T  16962233 actctgatacaatcttaaaaattgtggttggacctaacacaatcccacaaaaccg 16962287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 34236693 - 34236751
Alignment:
Q  13 tgtgaagtaaggattactcccatttataaacacattgtcagaccatctattatcggatg 71  Q
    ||||| || |||||| |||||| ||||||||||||||||||||||||| ||||| ||||    
T  34236693 tgtgaggtgaggattgctcccacttataaacacattgtcagaccatctcttatccgatg 34236751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 248
Target Start/End: Complemental strand, 16050196 - 16050068
Alignment:
Q  119 cgtgtacataaacgacgggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggtt 218  Q
    |||| ||||||| |||||||||| | ||| ||||||||||||| || ||||||||| ||||| | |||||| ||||||||  || ||| || | ||||||    
T  16050196 cgtgaacataaatgacgggtggcccgataacggaaatctgataacaggtggcccaaagaatcgt-gaagaggctctgataccatattagaagtcgtggtt 16050098  T
Q  219 ggacttaacgcaaccccgcaaaaccgactt 248  Q
    ||   |||| ||||||| |||||| |||||    
T  16050097 gggtctaacacaaccccacaaaactgactt 16050068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 26208202 - 26208281
Alignment:
Q  156 ctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaacccc 235  Q
    ||||||||| ||||||||||| ||||| ||  || ||||||||  |||||| ||||||||| ||||| |||| |||||||    
T  26208202 ctgatagcaggtggcccaacggatcttagagaaggctctgataccatcttagaaattgtggatggacctaacacaacccc 26208281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 28213384 - 28213439
Alignment:
Q  31 cccatttataaacacattgtcagaccatctattatcggatgcaagactctttaaca 86  Q
    |||| ||||||| |||||||||||| |||| ||||| |||| ||||||||||||||    
T  28213384 cccacttataaatacattgtcagactatctcttatccgatgtaagactctttaaca 28213439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 218
Target Start/End: Original strand, 37868500 - 37868598
Alignment:
Q  119 cgtgtacataaacgacgggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggtt 218  Q
    |||||||||||| |  ||||||| ||||||||||||  |||||||  ||||||||| | ||||||| |||| || |||||  ||||||||||| ||||||    
T  37868500 cgtgtacataaatggtgggtggcccaatagcggaaacttgatagcgggtggcccaatggatcttgg-agaggctatgataccatcttaaaaatcgtggtt 37868598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 29907789 - 29907847
Alignment:
Q  31 cccatttataaacacattgtcagaccatctattatcggatgcaagactctttaacacac 89  Q
    |||| |||||||||||||||||||| |||| ||||| ||||   |||||||||||||||    
T  29907789 cccacttataaacacattgtcagactatctcttatccgatgtgggactctttaacacac 29907847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 3961460 - 3961517
Alignment:
Q  29 ctcccatttataaacacattgtcagaccatctattatcggatgcaagactctttaaca 86  Q
    |||||||||||||||||||||||||  ||||| ||||| ||||   ||||||||||||    
T  3961460 ctcccatttataaacacattgtcagctcatctcttatctgatgtgggactctttaaca 3961517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 6463067 - 6463002
Alignment:
Q  178 atcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaacc 243  Q
    |||||||| |||  |||||||| |||||||||||||||||||| | |||| ||||| | |||||||    
T  6463067 atcttggaggaggttctgatatcatcttaaaaattgtggttgggcataacacaaccgcacaaaacc 6463002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 10615154 - 10615195
Alignment:
Q  201 atcttaaaaattgtggttggacttaacgcaaccccgcaaaac 242  Q
    |||||| ||||||||||||| |||||||||||||| ||||||    
T  10615154 atcttagaaattgtggttgggcttaacgcaaccccacaaaac 10615195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 249
Target Start/End: Complemental strand, 31197755 - 31197653
Alignment:
Q  145 atagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaaccg 244  Q
    |||||||||| ||||||||| ||||||||| | |||| ||| ||| ||||||||  |||||| ||||  ||||||| | |||| ||||||  ||||||||    
T  31197755 atagcggaaacctgatagcaggtggcccaatggatctcgga-gaggctctgataccatcttagaaatc-tggttgggcctaacacaaccctacaaaaccg 31197658  T
Q  245 acttt 249  Q
    |||||    
T  31197657 acttt 31197653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 124 - 249
Target Start/End: Complemental strand, 4155486 - 4155362
Alignment:
Q  124 acataaacgacgggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggact 223  Q
    |||||||||  ||||||| | |||||||||| ||||||||| ||||||||| |||||||||| ||||||||||||  |||||| |||| |||||||| |     
T  4155486 acataaacggtgggtggcccgatagcggaaacctgatagcaggtggcccaatgaatcttgga-gagactctgataccatcttagaaatcgtggttgggcc 4155388  T
Q  224 taacgcaaccccgcaaaaccgacttt 249  Q
    |||| ||||||| |||||||| ||||    
T  4155387 taacacaaccccacaaaaccggcttt 4155362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 244
Target Start/End: Original strand, 12930076 - 12930169
Alignment:
Q  151 gaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaaccg 244  Q
    |||| ||||||||| ||||||||||| ||| |||| ||| || |||||  |||||| |||| |||||||| | |||| ||||||| ||||||||    
T  12930076 gaaacctgatagcaggtggcccaacggatcatggaggaggctttgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccg 12930169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 30179741 - 30179826
Alignment:
Q  1 acaaaattgacctgtgaagtaaggattactcccatttataaacacattgtcagaccatctattatcggatgcaagactctttaaca 86  Q
    |||||| |||| ||||| || |||||||| |||| ||||||||||||||||||  ||||| ||||| ||||   ||||||||||||    
T  30179741 acaaaactgacttgtgaggtgaggattacccccacttataaacacattgtcaggtcatctcttatctgatgtgggactctttaaca 30179826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 20303328 - 20303426
Alignment:
Q  145 atagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaaccg 244  Q
    |||| ||||| ||||||||| ||||||||| | || || || ||| ||||||||  || ||| ||||||||||||||| |||| ||||||| ||||||||    
T  20303328 atagtggaaacctgatagcaggtggcccaatggattttaga-gaggctctgataccatattagaaattgtggttggacctaacacaaccccacaaaaccg 20303426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 46794070 - 46794021
Alignment:
Q  36 ttataaacacattgtcagaccatctattatcggatgcaagactctttaac 85  Q
    ||||||||||||||||||||||||| ||||| |||| | |||| ||||||    
T  46794070 ttataaacacattgtcagaccatctcttatccgatgtaggactatttaac 46794021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 16926930 - 16926990
Alignment:
Q  184 gaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaaccg 244  Q
    |||||||||||||||  |||||| |||| |||||||  |||||| ||||||| ||||||||    
T  16926930 gaagagactctgataccatcttagaaatcgtggttgagcttaacacaaccccacaaaaccg 16926990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 35018617 - 35018542
Alignment:
Q  144 aatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttgg 220  Q
    ||||||||||| || |||||| ||| ||||||| ||||||| | || ||||||||| |||||| || ||||||||||    
T  35018617 aatagcggaaaccttatagcaagtgacccaacggatcttgg-ataggctctgatatcatcttagaatttgtggttgg 35018542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 185
Target Start/End: Complemental strand, 10523265 - 10523119
Alignment:
Q  40 aaacacattgtcagaccatctattatcggatgcaagactctttaacacactcc-tcttgtttaggattggacatctcaagcgtgtacataaacgacgggt 138  Q
    ||||||||||||||||||||| ||||| ||||   |||||||||||||||||| ||  | | |||||||||||||| ||||||| ||||||| |  ||||    
T  10523265 aaacacattgtcagaccatctcttatccgatgtgggactctttaacacactccctcacgctcaggattggacatctgaagcgtggacataaatggtgggt 10523166  T
Q  139 ggctcaatagcggaaatctgatagcatgtggcccaacgaatcttgga 185  Q
    ||||| ||| ||||||  |||||||| ||| ||||||  ||||||||    
T  10523165 ggctcgataacggaaacttgatagcaggtgacccaacagatcttgga 10523119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 246
Target Start/End: Complemental strand, 13210668 - 13210567
Alignment:
Q  145 atagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaaccg 244  Q
    |||| ||||||||||||||||||||||||| | |||||||| ||| ||||||||  |||||| || |||||||||| | |||| | ||||| ||||||||    
T  13210668 atagaggaaatctgatagcatgtggcccaatggatcttggaggagtctctgataccatcttagaatttgtggttgggcctaacacgaccccacaaaaccg 13210569  T
Q  245 ac 246  Q
    ||    
T  13210568 ac 13210567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 243
Target Start/End: Original strand, 93287 - 93394
Alignment:
Q  135 gggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccc 234  Q
    ||||||| | ||| |||||| ||||||||| ||||||||| | |||||||| ||| ||||||||  ||||||||||| |||||||| | |||| ||||||    
T  93287 gggtggcccgataacggaaagctgatagcaggtggcccaatggatcttgga-gaggctctgataccatcttaaaaatcgtggttgggcctaacacaaccc 93385  T
Q  235 cgcaaaacc 243  Q
    | |||||||    
T  93386 cacaaaacc 93394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 249
Target Start/End: Original strand, 36352092 - 36352205
Alignment:
Q  135 gggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccc 234  Q
    ||||||| | ||| |||||| |||||| || ||||||| | | |||||| |||||||||| |||  ||||||||||||||||||| || |||| ||||||    
T  36352092 gggtggcccgataacggaaacctgataacaggtggcccgatggatcttg-aagagactctaataccatcttaaaaattgtggttgaacctaacacaaccc 36352190  T
Q  235 cgcaaaaccgacttt 249  Q
    | |||||||| ||||    
T  36352191 cacaaaaccggcttt 36352205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 11099535 - 11099619
Alignment:
Q  135 gggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttg 219  Q
    ||||||||| ||||||||||||||||||||  ||| |||| ||||| |||| ||||||||||||  ||||  |||||| ||||||    
T  11099535 gggtggctcgatagcggaaatctgatagcagatggtccaatgaatcatggaggagactctgataccatctataaaattatggttg 11099619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 244
Target Start/End: Original strand, 28407691 - 28407834
Alignment:
Q  101 aggattggacatctcaagcgtgtacataaacgacgggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatata 200  Q
    ||||||| |||||| || |||| ||||||| |||||||||| | ||| ||||||||||| | || ||| ||||| ||||| || |  || ||||||||      
T  28407691 aggattgcacatctgaaacgtgaacataaatgacgggtggcccgataacggaaatctgacaacaggtgacccaaagaatcgtgaaccaggctctgatacc 28407790  T
Q  201 atcttaaaaattgtggttggacttaacgcaaccccgcaaaaccg 244  Q
    |||||| |||| |||||||| | |||| |||| || ||||||||    
T  28407791 atcttagaaatcgtggttgggcctaacacaactccacaaaaccg 28407834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 10523039 - 10522986
Alignment:
Q  32 ccatttataaacacattgtcagaccatctattatcggatgcaagactctttaac 85  Q
    ||||||||||||||||||||||| ||||| ||||  ||||| ||||||||||||    
T  10523039 ccatttataaacacattgtcagatcatcttttattcgatgcgagactctttaac 10522986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 248
Target Start/End: Complemental strand, 38630032 - 38629880
Alignment:
Q  96 tgtttaggattggacatctcaagcgtgtacataaacgacgggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctg 195  Q
    ||||||||||||||||||| ||  ||| | ||||| | ||||||   | |||||||||| || |||| | ||| |||| || |||||||| ||| |||||    
T  38630032 tgtttaggattggacatctgaatagtggatataaatggcgggtgatccgatagcggaaacctaatagaaggtgacccatcggatcttggaggaggctctg 38629933  T
Q  196 atataatcttaaaaattgtggttggacttaacgcaaccccgcaaaaccgactt 248  Q
    |||  ||||||||||| ||| ||| || |||| |||  || ||||||||||||    
T  38629932 ataccatcttaaaaatcgtgattgaacataacacaattccacaaaaccgactt 38629880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 9927950 - 9927903
Alignment:
Q  13 tgtgaagtaaggattactcccatttataaacacattgtcagaccatct 60  Q
    ||||| || |||||||| |||| |||||||||||||||||||||||||    
T  9927950 tgtgaggtgaggattacccccacttataaacacattgtcagaccatct 9927903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 40149179 - 40149253
Alignment:
Q  145 atagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttgg 220  Q
    ||||| |||||||||||||| ||| ||||| | |||||| ||||| ||||||||  |||||| |||||||||||||    
T  40149179 atagctgaaatctgatagcaggtgacccaatggatcttg-aagaggctctgataccatcttagaaattgtggttgg 40149253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 15124737 - 15124825
Alignment:
Q  156 ctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaaccga 245  Q
    ||||||||| |||| |||| | |||||||| ||||||||||||  |||||| |||| ||||||||   |||| ||||||| |||||||||    
T  15124737 ctgatagcaggtggtccaatggatcttgga-gagactctgataccatcttagaaatcgtggttgggtctaacacaaccccacaaaaccga 15124825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 19571148 - 19571209
Alignment:
Q  157 tgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggtt 218  Q
    |||||| | ||||||||| ||||||| |||||| ||||||||  || |||||||||||||||    
T  19571148 tgatagtaggtggcccaatgaatcttagaagaggctctgataccatattaaaaattgtggtt 19571209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 27897587 - 27897651
Alignment:
Q  184 gaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaaccgactt 248  Q
    ||||||||| |||||  |||||| |||| |||||||| | |||| ||||||| ||||||||||||    
T  27897587 gaagagactttgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccgactt 27897651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 30701130 - 30701170
Alignment:
Q  208 aaattgtggttggacttaacgcaaccccgcaaaaccgactt 248  Q
    ||||||||||||| |||||| ||||||| ||||||||||||    
T  30701130 aaattgtggttgggcttaacacaaccccacaaaaccgactt 30701170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 240
Target Start/End: Original strand, 40716519 - 40716658
Alignment:
Q  101 aggattggacatctcaagcgtgtacataaacgacgggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatata 200  Q
    ||||||| |||||| ||||||| ||||||| |||||||||| | ||| |||||| ||||||||| ||||||||||| ||| |||| ||| ||||||||      
T  40716519 aggattgcacatctgaagcgtgaacataaatgacgggtggcccgataacggaaacctgatagcaggtggcccaacggatcgtggatgaggctctgatacc 40716618  T
Q  201 atcttaaaaattgtggttggacttaacgcaaccccgcaaa 240  Q
    |||||| |||   ||||||| | |||| ||||||| ||||    
T  40716619 atcttagaaaccatggttgggcctaacacaaccccacaaa 40716658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 248
Target Start/End: Complemental strand, 9685583 - 9685437
Alignment:
Q  101 aggattggacatctcaagcgtgtacataaacgacgggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatata 200  Q
    ||||||| |||||| ||||||| ||||||| |||||||||| | ||| |||||| |||||| || ||||||||| ||||  || ||||| ||||||||      
T  9685583 aggattgcacatctgaagcgtgaacataaatgacgggtggcccgataacggaaacctgataacaggtggcccaaagaattgtg-aagaggctctgatacc 9685485  T
Q  201 atcttaaaaattgtggttggacttaacgcaaccccgcaaaaccgactt 248  Q
    || ||| |||| |||||||| | |||| ||||| | ||||||||||||    
T  9685484 atattagaaatcgtggttgggcctaacacaacctcacaaaaccgactt 9685437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 244
Target Start/End: Original strand, 12869162 - 12869304
Alignment:
Q  101 aggattggacatctcaagcgtgtacataaacgacgggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatata 200  Q
    ||||||| |||| | ||||||| ||||||| |||||||| | | ||| |||||| |||||| || |||| ||||  |||| || ||||||||||||||      
T  12869162 aggattgcacatttgaagcgtgaacataaatgacgggtgacccgataacggaaacctgataacaggtgggccaaaaaatcgtg-aagagactctgatacc 12869260  T
Q  201 atcttaaaaattgtggttggacttaacgcaaccccgcaaaaccg 244  Q
    |||||| |||| |||||||| | |||| ||||||| ||||||||    
T  12869261 atcttagaaatcgtggttgggcctaacacaaccccacaaaaccg 12869304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 22822492 - 22822393
Alignment:
Q  145 atagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaaccg 244  Q
    |||||||||| ||||||||| || ||||||||| ||||| | ||| |||||||| ||||||| || |||||||||||| |||  ||||| | ||||||||    
T  22822492 atagcggaaacctgatagcaggtagcccaacgagtcttgtaggaggctctgatacaatcttagaatttgtggttggacctaatacaaccgcacaaaaccg 22822393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 244
Target Start/End: Complemental strand, 35788797 - 35788702
Alignment:
Q  149 cggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaaccg 244  Q
    |||||| ||||||||| ||||||||||| |||||||| ||| ||||||||  |||||| |||| |||||||| | |||| |||||||  |||||||    
T  35788797 cggaaacctgatagcaggtggcccaacggatcttggaggaggctctgataccatcttagaaatcgtggttgggcctaacacaaccccataaaaccg 35788702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 40717384 - 40717487
Alignment:
Q  145 atagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaaccg 244  Q
    |||||||||| ||||| ||| ||||||||| | || ||||| ||| ||||||||  |||||| |||| |||||||| | |||| ||||||| ||||||||    
T  40717384 atagcggaaacctgatggcaggtggcccaatggatattgga-gaggctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccg 40717482  T
Q  245 acttt 249  Q
    |||||    
T  40717483 acttt 40717487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 124 - 248
Target Start/End: Original strand, 53814851 - 53814974
Alignment:
Q  124 acataaacgacgggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggact 223  Q
    ||||||| |||||||| | | ||| | |||| |||||| || ||||||||| ||||| || ||||| ||||||||  || ||| |||| |||||||| ||    
T  53814851 acataaatgacgggtgacccgataacagaaacctgataacaggtggcccaaagaatcgtg-aagaggctctgataccatattagaaatcgtggttgggct 53814949  T
Q  224 taacgcaaccccgcaaaaccgactt 248  Q
    |||| ||||||| ||||||||||||    
T  53814950 taacacaaccccacaaaaccgactt 53814974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 109 - 241
Target Start/End: Original strand, 53828430 - 53828561
Alignment:
Q  109 acatctcaagcgtgtacataaacgacgggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaa 208  Q
    |||||| ||||||| ||||||| |||||||||| | ||| |||||| ||||||  | ||||||||| ||||| |  || || ||||||||  |||||| |    
T  53828430 acatctaaagcgtgaacataaatgacgggtggcccgataacggaaacctgataataggtggcccaaagaatcgttaaa-aggctctgataccatcttaga 53828528  T
Q  209 aattgtggttggacttaacgcaaccccgcaaaa 241  Q
    |||||||||||| | |||| ||||||| |||||    
T  53828529 aattgtggttgggcctaacacaaccccacaaaa 53828561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 171
Target Start/End: Complemental strand, 2516152 - 2516082
Alignment:
Q  101 aggattggacatctcaagcgtgtacataaacgacgggtggctcaatagcggaaatctgatagcatgtggcc 171  Q
    |||||||||||||| ||||||| || |||| | |||||||||  ||| |||||| ||||||||||||||||    
T  2516152 aggattggacatctgaagcgtggacgtaaatggcgggtggcttgataacggaaacctgatagcatgtggcc 2516082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 30530105 - 30530178
Alignment:
Q  145 atagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttg 219  Q
    |||||||||||||||||||| |||||| || | ||||||| |||| ||||||||  |||||| ||||||||||||    
T  30530105 atagcggaaatctgatagcaggtggcctaatggatcttgg-agaggctctgataccatcttagaaattgtggttg 30530178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 220
Target Start/End: Complemental strand, 4464542 - 4464362
Alignment:
Q  40 aaacacattgtcagaccatctattatcggatgcaagactctttaacacactcc-tcttgtttaggattggacatctcaagcgtgtacataaacgacgggt 138  Q
    ||||||||||| |||  |||| ||||  ||||  ||||||||||||||||||| ||  | | ||||||| |||||| ||||||| ||||| | |  ||||    
T  4464542 aaacacattgttagataatctcttatttgatgtgagactctttaacacactccctcacgctcaggattg-acatctaaagcgtgcacatatatggtgggt 4464444  T
Q  139 ggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttgg 220  Q
    | ||| ||| |||||| ||||||||||||| ||||| | |||||| | ||| ||||||||  |||||| || | ||||||||    
T  4464443 gactcgataacggaaacctgatagcatgtgacccaatggatcttgaaggaggctctgataccatcttagaattcgtggttgg 4464362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 242
Target Start/End: Original strand, 35819071 - 35819167
Alignment:
Q  145 atagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaac 242  Q
    |||||||||| ||||||||| ||||||||| | ||||| || |||||||||||   ||||||||||| |||||||| | |||| ||||| | ||||||    
T  35819071 atagcggaaacctgatagcaggtggcccaatggatcttaga-gagactctgatgccatcttaaaaatcgtggttgggcctaacacaacctcacaaaac 35819167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 44118904 - 44118977
Alignment:
Q  13 tgtgaagtaaggattactcccatttataaacacattgtcagaccatctattatcggatgcaagactctttaaca 86  Q
    ||||| || |||||||| |||| |||||||||||||||||| |||||| ||||| ||||   ||||||||||||    
T  44118904 tgtgaggtgaggattacccccacttataaacacattgtcaggccatctcttatccgatgtgggactctttaaca 44118977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 44249129 - 44249076
Alignment:
Q  36 ttataaacacattgtcagaccatctattatcggatgcaagactctttaacacac 89  Q
    ||||||||||||||||||||||||| ||||| |||| | |||| ||||||||||    
T  44249129 ttataaacacattgtcagaccatcttttatccgatgtaggactatttaacacac 44249076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 41037090 - 41037142
Alignment:
Q  35 tttataaacacattgtcagaccatctattatcggatgcaagactctttaacac 87  Q
    |||||||||||| |||||||| |||| ||||| |||| |||||||||||||||    
T  41037090 tttataaacacactgtcagactatcttttatccgatgtaagactctttaacac 41037142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 40965195 - 40965125
Alignment:
Q  157 tgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaac 227  Q
    ||||||||||||| |||||| ||||| || |||||| |||||  || ||| |||||||||||| |||||||    
T  40965195 tgatagcatgtggtccaacggatcttagaggagactatgataccatattagaaattgtggttgaacttaac 40965125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 400610 - 400678
Alignment:
Q  13 tgtgaagtaaggattactcccatttataaacacattgtcagaccatctattatcggatgcaagactctt 81  Q
    ||||| || |||||| | |||| |||||||||||||||||||||||||  |||| ||||  ||||||||    
T  400610 tgtgaggtgaggatttcccccacttataaacacattgtcagaccatctcatatctgatgtgagactctt 400678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 36685908 - 36685960
Alignment:
Q  1 acaaaattgacctgtgaagtaaggattactcccatttataaacacattgtcag 53  Q
    |||||| |||| ||||| || ||||| || |||||||||||||||||||||||    
T  36685908 acaaaactgacttgtgaggtgaggataacccccatttataaacacattgtcag 36685960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 9705157 - 9705059
Alignment:
Q  150 ggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaaccgactt 248  Q
    ||||| ||||||||| |||||||||| ||||||||| ||| ||||||||  |||||| |||| |||||||| | |||| ||||||| ||||||||||||    
T  9705157 ggaaacctgatagcaggtggcccaacaaatcttggaggaggctctgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccgactt 9705059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 143 - 248
Target Start/End: Original strand, 8001490 - 8001595
Alignment:
Q  143 caatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaac 242  Q
    ||||| |||||| ||||||||| ||||||||||| |||||  | ||||||||||||  |||||| ||||||||||||| | |||| ||||||  |||||     
T  8001490 caatatcggaaacctgatagcaggtggcccaacggatctttaaggagactctgataccatcttagaaattgtggttgggcctaacacaacccaacaaaat 8001589  T
Q  243 cgactt 248  Q
    ||||||    
T  8001590 cgactt 8001595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 6054312 - 6054237
Alignment:
Q  143 caatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttg 219  Q
    |||||||||||| ||||||||| |||||| || ||||||| ||||||  |||||||| |||||| |||| |||||||    
T  6054312 caatagcggaaacctgatagcaggtggcctaatgaatctt-gaagaggttctgatatcatcttagaaatcgtggttg 6054237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 31729367 - 31729415
Alignment:
Q  172 caacgaatcttggaagagactctgatataatcttaaaaattgtggttgg 220  Q
    |||||||||||| | ||||||||||||| |||||||||||| |||||||    
T  31729367 caacgaatcttgaatgagactctgatatcatcttaaaaattttggttgg 31729415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 11085722 - 11085624
Alignment:
Q  145 atagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaaccg 244  Q
    |||||||||| ||||||||| ||||||||||| ||||||| |||| |||| | |  |||||| |||| ||| |||||| |||| ||||| | ||||||||    
T  11085722 atagcggaaacctgatagcaggtggcccaacgtatcttgg-agaggctctaaaaccatcttagaaatcgtgattggacctaacacaaccgcacaaaaccg 11085624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 244
Target Start/End: Complemental strand, 30256729 - 30256621
Alignment:
Q  135 gggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccc 234  Q
    ||||||||| ||| || ||| ||||||||||| ||||||| | || |||||| || ||||||||  | |||| |||| |||||||| | |||| ||||||    
T  30256729 gggtggctcgatatcgaaaacctgatagcatgcggcccaatggattttggaa-aggctctgataccaccttagaaatcgtggttgggcctaacacaaccc 30256631  T
Q  235 cgcaaaaccg 244  Q
    | ||||||||    
T  30256630 cacaaaaccg 30256621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 33631793 - 33631846
Alignment:
Q  191 ctctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaaccg 244  Q
    ||||||||| |||||||||||  ||||||||| |||| ||||||| ||||||||    
T  33631793 ctctgatatcatcttaaaaatcatggttggacctaactcaaccccacaaaaccg 33631846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 6543006 - 6543046
Alignment:
Q  31 cccatttataaacacattgtcagaccatctattatcggatg 71  Q
    |||| ||||||||||||||||||||||||| ||||| ||||    
T  6543006 cccacttataaacacattgtcagaccatctcttatccgatg 6543046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 244
Target Start/End: Complemental strand, 25620287 - 25620179
Alignment:
Q  135 gggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccc 234  Q
    ||||||| |||||||||||| ||||||||| ||||||||| | ||||||| |||| ||||||||  |||||| |||| |||||||| | |||| ||||||    
T  25620287 gggtggcccaatagcggaaacctgatagcaggtggcccaatggatcttgg-agaggctctgataccatcttagaaatcgtggttgggcctaacacaaccc 25620189  T
Q  235 cgcaaaaccg 244  Q
    | ||||||||    
T  25620188 cacaaaaccg 25620179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 248
Target Start/End: Original strand, 2544348 - 2544492
Alignment:
Q  101 aggattggacatctcaagcgtgtacataaacgacgggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatata 200  Q
    ||||||| |||| | ||||||| ||||||| |||||||||||| ||| |||||| || ||| || ||||||||| ||||| | |||||||  ||||||      
T  2544348 aggattgcacatttgaagcgtgaacataaatgacgggtggctcgataacggaaacctaataacaggtggcccaaagaatcgt-gaagaga--ctgatacc 2544444  T
Q  201 atcttaaaaattgtggttggacttaacgcaaccccgcaaaaccgactt 248  Q
    || |||||||| |||||||| | |||| ||||||| ||||||||||||    
T  2544445 atattaaaaatcgtggttgggcctaacacaaccccacaaaaccgactt 2544492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 149 - 248
Target Start/End: Original strand, 26239862 - 26239961
Alignment:
Q  149 cggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaaccgactt 248  Q
    |||||| ||||||||| ||||||||||| |||||||| ||| ||||||||  |||||| |||||||||||||   |||| ||||||| ||| ||||||||    
T  26239862 cggaaacctgatagcaggtggcccaacggatcttggaggaggctctgataccatcttagaaattgtggttgggtctaacacaaccccacaataccgactt 26239961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 30727287 - 30727369
Alignment:
Q  135 gggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggt 217  Q
    ||||||| |||||||||||| ||||||| | |||||||||| |||||||||  |||||||||||  |||||||||||| ||||    
T  30727287 gggtggcccaatagcggaaacctgatagaaggtggcccaacaaatcttggattagactctgataccatcttaaaaattctggt 30727369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 240
Target Start/End: Complemental strand, 1596744 - 1596640
Alignment:
Q  135 gggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccc 234  Q
    ||||||| | |||||||||| |||||| |||||||||||| | ||||||| |||| ||||||||  |||||| ||||||||||| | | |||| ||||||    
T  1596744 gggtggcccgatagcggaaacctgataacatgtggcccaatggatcttgg-agaggctctgataccatcttagaaattgtggttaggcctaacacaaccc 1596646  T
Q  235 cgcaaa 240  Q
    | ||||    
T  1596645 cacaaa 1596640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 248
Target Start/End: Complemental strand, 28080805 - 28080703
Alignment:
Q  145 atagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaaccg 244  Q
    ||||||||||  |||||||| |||||||||   |||||| ||||| ||||||||| |||||| |||| |||||||||  ||||  |||||| ||||||||    
T  28080805 atagcggaaacttgatagcaggtggcccaatagatcttg-aagaggctctgatatcatcttagaaatcgtggttggatctaacataaccccacaaaaccg 28080707  T
Q  245 actt 248  Q
    ||||    
T  28080706 actt 28080703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 241
Target Start/End: Original strand, 18826421 - 18826526
Alignment:
Q  135 gggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccc 234  Q
    ||||||||| ||||||||||| ||||||||  |||| ||  | ||||| |||||| ||||||||| |||||| ||||| |||||| || |||| ||||||    
T  18826421 gggtggctcgatagcggaaatttgatagcagatggctcagtggatctt-gaagaggctctgatatcatcttagaaattatggttgaacctaacacaaccc 18826519  T
Q  235 cgcaaaa 241  Q
    | |||||    
T  18826520 cacaaaa 18826526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 36993249 - 36993326
Alignment:
Q  143 caatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttgga 221  Q
    |||||||||||||||||||||| ||||||||| | ||||| |||||| ||||||||  |||||| ||||  ||||||||    
T  36993249 caatagcggaaatctgatagcacgtggcccaatggatctt-gaagaggctctgataccatcttagaaatcatggttgga 36993326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 44342885 - 44342959
Alignment:
Q  159 atagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaacc 233  Q
    |||||| ||||||||||  |||||||| |||||| |||||  |||||||||||||||||||  |||||| |||||    
T  44342885 atagcaggtggcccaacagatcttggaggagactttgataccatcttaaaaattgtggttgatcttaacacaacc 44342959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 138 - 241
Target Start/End: Complemental strand, 21821954 - 21821852
Alignment:
Q  138 tggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgc 237  Q
    |||| |||||||||||| ||| |||||  |||||||||| ||||| |||||| ||||||||  |||||| |||| |||||||| | |||| ||| ||| |    
T  21821954 tggcccaatagcggaaacctgctagcagttggcccaacgtatctt-gaagaggctctgataccatcttagaaatcgtggttgggcctaacacaatcccac 21821856  T
Q  238 aaaa 241  Q
    ||||    
T  21821855 aaaa 21821852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 241
Target Start/End: Complemental strand, 40746449 - 40746311
Alignment:
Q  102 ggattggacatctcaagcgtgtacataaacgacgggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataa 201  Q
    |||||| |||||| ||||||| ||||||| |||||||||| | ||| |||||| |||||| ||  || ||||| || || || ||||| |||| |||  |    
T  40746449 ggattgcacatctgaagcgtgaacataaatgacgggtggcccgataacggaaacctgataacagttgccccaaagattcgtg-aagaggctctaatacca 40746351  T
Q  202 tcttaaaaattgtggttggacttaacgcaaccccgcaaaa 241  Q
    | ||| ||||||||||||| | |||| ||||||| |||||    
T  40746350 tattagaaattgtggttgggcctaacacaaccccacaaaa 40746311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 4454815 - 4454762
Alignment:
Q  13 tgtgaagtaaggattactcccatttataaacacattgtcagaccatctattatc 66  Q
    ||||| || |||||| | |||| |||||||||||||||||||||||||| ||||    
T  4454815 tgtgaggtgaggattgcccccacttataaacacattgtcagaccatctaatatc 4454762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 4507775 - 4507727
Alignment:
Q  39 taaacacattgtcagaccatctattatcggatgcaagactctttaacac 87  Q
    |||||||||| ||||||||||| ||||| |||| | |||||||||||||    
T  4507775 taaacacattatcagaccatctcttatccgatgtaggactctttaacac 4507727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 244
Target Start/End: Original strand, 41666925 - 41667034
Alignment:
Q  135 gggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccc 234  Q
    ||||||| | ||| |||||| ||||||||| ||||||||||| |||||||| ||| ||||||||  |||||| |||| |||||||| | |||| ||||||    
T  41666925 gggtggcccgataacggaaacctgatagcaggtggcccaacggatcttggaggaggctctgataccatcttagaaatcgtggttgggcctaacacaaccc 41667024  T
Q  235 cgcaaaaccg 244  Q
    | ||||||||    
T  41667025 cacaaaaccg 41667034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 135 - 244
Target Start/End: Original strand, 24270038 - 24270146
Alignment:
Q  135 gggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccc 234  Q
    ||||||| | ||| |||||| ||||||||| ||||||||| | |||||||| ||| ||||||||  ||||||||||| |||||||| | |||| ||||||    
T  24270038 gggtggcccgataacggaaacctgatagcaggtggcccaatggatcttggaggaggctctgataccatcttaaaaatcgtggttggtc-taacacaaccc 24270136  T
Q  235 cgcaaaaccg 244  Q
    | ||||||||    
T  24270137 cacaaaaccg 24270146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 135 - 244
Target Start/End: Original strand, 24346669 - 24346778
Alignment:
Q  135 gggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccc 234  Q
    ||||||| | ||| |||||| ||||||||| ||||||||| | |||||||| ||| ||||||||  ||||||||||| ||||||||   |||| ||||||    
T  24346669 gggtggcccgataacggaaacctgatagcaggtggcccaatggatcttggaggaggctctgataccatcttaaaaatcgtggttgggtctaacacaaccc 24346768  T
Q  235 cgcaaaaccg 244  Q
    | ||||||||    
T  24346769 cacaaaaccg 24346778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 240
Target Start/End: Complemental strand, 6637788 - 6637648
Alignment:
Q  101 aggattggacatctcaagcgtgtacataaacgacgggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatata 200  Q
    |||| ||||||| | ||||||| ||||||| |||||||||| | |||  | ||||| ||||||| ||||||||||  ||| |||| ||| ||||||||      
T  6637788 aggactggacatttgaagcgtgaacataaatgacgggtggcccgataatgaaaatccgatagcaagtggcccaacagatcgtggaggaggctctgatacc 6637689  T
Q  201 atcttaa-aaattgtggttggacttaacgcaaccccgcaaa 240  Q
    ||||||| |||| |||||||| |||||  ||||||||||||    
T  6637688 atcttaataaatcgtggttgggcttaatacaaccccgcaaa 6637648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 243
Target Start/End: Complemental strand, 15480473 - 15480366
Alignment:
Q  135 gggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccc 234  Q
    ||||||| |||||||||||| ||||||||| ||||||||| | ||||| |||||| ||||||||  |||||| |||| |||||||| | ||||  |||||    
T  15480473 gggtggcccaatagcggaaacctgatagcaggtggcccaatggatctt-gaagaggctctgataccatcttagaaatcgtggttgggcctaacagaaccc 15480375  T
Q  235 cgcaaaacc 243  Q
    | |||||||    
T  15480374 cacaaaacc 15480366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 244
Target Start/End: Complemental strand, 9368738 - 9368638
Alignment:
Q  143 caatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaac 242  Q
    |||||||||||| ||||||||| ||||||||| | ||||| |||||| ||||||||  | |||| ||||| ||||||| | |||| ||||||| ||||||    
T  9368738 caatagcggaaacctgatagcaggtggcccaatggatctt-gaagaggctctgataccaccttagaaattatggttgggcctaacacaaccccacaaaac 9368640  T
Q  243 cg 244  Q
    ||    
T  9368639 cg 9368638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 248
Target Start/End: Original strand, 25258244 - 25258346
Alignment:
Q  145 atagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaaccg 244  Q
    |||||||||| ||||||||| ||||||||| | ||||||||  || ||||||||  |||||| |||| |||||||   ||||| ||||||| ||||||||    
T  25258244 atagcggaaacctgatagcaggtggcccaatggatcttggagaag-ctctgataccatcttagaaatcgtggttgagtttaacacaaccccacaaaaccg 25258342  T
Q  245 actt 248  Q
    ||||    
T  25258343 actt 25258346  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 248
Target Start/End: Original strand, 25322034 - 25322136
Alignment:
Q  145 atagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaaccg 244  Q
    |||||||||| ||||||||| ||||||||| | ||||||||  || ||||||||  |||||| |||| |||||||   ||||| ||||||| ||||||||    
T  25322034 atagcggaaacctgatagcaggtggcccaatggatcttggagaag-ctctgataccatcttagaaatcgtggttgagtttaacacaaccccacaaaaccg 25322132  T
Q  245 actt 248  Q
    ||||    
T  25322133 actt 25322136  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 241
Target Start/End: Original strand, 17352610 - 17352706
Alignment:
Q  143 caatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaa 241  Q
    |||||||||||| ||||||||| ||||| ||| || ||||| ||||| ||||||||  |||||| |||| |||||||||| ||||  ||||||||||||    
T  17352610 caatagcggaaacctgatagcaagtggctcaagga-tcttg-aagaggctctgataccatcttagaaatggtggttggacctaacataaccccgcaaaa 17352706  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 37656982 - 37657028
Alignment:
Q  13 tgtgaagtaaggattactcccatttataaacacattgtcagaccatc 59  Q
    ||||| ||||||||||| |||| ||||||||||||||||||||||||    
T  37656982 tgtgaggtaaggattacccccacttataaacacattgtcagaccatc 37657028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 18333510 - 18333557
Alignment:
Q  13 tgtgaagtaaggattactcccatttataaacacattgtcagaccatct 60  Q
    ||||| || |||||||| |||| |||||||||||||||||||||||||    
T  18333510 tgtgaggtgaggattacccccacttataaacacattgtcagaccatct 18333557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 248
Target Start/End: Original strand, 32908895 - 32908997
Alignment:
Q  145 atagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaaccg 244  Q
    ||||| |||| |||||||||  |||||||| | |||||| ||||| |||| |||| |||||| ||||||||||||    |||| ||||||| ||||||||    
T  32908895 atagcagaaacctgatagcagatggcccaatggatcttg-aagaggctctaatatcatcttagaaattgtggttgagtctaacacaaccccacaaaaccg 32908993  T
Q  245 actt 248  Q
    ||||    
T  32908994 actt 32908997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 1564612 - 1564685
Alignment:
Q  13 tgtgaagtaaggattactcccatttataaacacattgtcagaccatctattatcggatgcaagactctttaaca 86  Q
    ||||| || |||||| | |||| |||||| |||||||||||||||||| ||||| ||||   ||||||||||||    
T  1564612 tgtgatgtgaggattgcccccacttataatcacattgtcagaccatctcttatccgatgtgggactctttaaca 1564685  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 248
Target Start/End: Original strand, 2063683 - 2063779
Alignment:
Q  151 gaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaaccgactt 248  Q
    |||| |||||| ||||||  |||| | |||||| ||||| ||||||||  |||||| |||| |||||||| | |||| ||||||| ||||||||||||    
T  2063683 gaaacctgataacatgtgatccaatggatcttg-aagaggctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccgactt 2063779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 19522264 - 19522199
Alignment:
Q  109 acatctcaagcgtgtacataaacgacgggtggctcaatagcggaaatctgatagcatgtggcccaa 174  Q
    |||||| ||||||| ||||||| |||||||||||  ||| ||||||||| ||| || |||||||||    
T  19522264 acatctgaagcgtgaacataaatgacgggtggcttgataacggaaatctcataacaggtggcccaa 19522199  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 15438916 - 15438840
Alignment:
Q  13 tgtgaagtaaggattactcccatttataaacacattgtcagaccatctattatcggatgcaagactctttaacacac 89  Q
    ||||| || |||||| | |||| ||||||||||||| |||||||||||  |||| ||||  | ||||||||||||||    
T  15438916 tgtgaggtgaggattgcccccacttataaacacattatcagaccatctcatatccgatgtgaaactctttaacacac 15438840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 17150401 - 17150476
Alignment:
Q  135 gggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaat 211  Q
    ||||||| | |||||||||| ||||||| | ||||||||| | |||||| ||||| ||||||||  |||||||||||    
T  17150401 gggtggcccgatagcggaaacctgatagtaggtggcccaatggatcttg-aagaggctctgataccatcttaaaaat 17150476  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 35167562 - 35167646
Alignment:
Q  135 gggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttg 219  Q
    ||||||||||||| |  |||  ||||||||||| | | |||  |||||||| ||||||||||||| |||||| |||| |||||||    
T  35167562 gggtggctcaataacataaacatgatagcatgtagtctaacagatcttggaggagactctgatatcatcttagaaatcgtggttg 35167646  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 26177049 - 26176951
Alignment:
Q  145 atagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaaccg 244  Q
    |||||||||||||||||||| ||||||||| | ||||||| |||| ||||||||| |||||| |||| | |||||| | |||| ||||||| ||||||||    
T  26177049 atagcggaaatctgatagcaggtggcccaatggatcttgg-agaggctctgatatcatcttagaaatcgcggttgggcctaacacaaccccacaaaaccg 26176951  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 7652334 - 7652239
Alignment:
Q  36 ttataaacacattgtcagaccatctattatcggatgcaagactctttaacacactcctcttgtttaggattggacatctcaagcgtgtacataaacg 132  Q
    ||||||||||||||||||||||||| ||||| |||| ||||||| ||||||| |||||   | | | ||||||||||||  |||||| |||||||||    
T  7652334 ttataaacacattgtcagaccatcttttatccgatgtaagactc-ttaacaccctcctgaagctaatgattggacatcttgagcgtgaacataaacg 7652239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 241
Target Start/End: Complemental strand, 5109386 - 5109296
Alignment:
Q  150 ggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaa 241  Q
    ||||| ||||||| | ||||| |||||||||||||| ||||||||||||  ||||||||||||||  |||||| |||| ||| ||| |||||    
T  5109386 ggaaacctgatagaaggtggctcaacgaatcttgga-gagactctgataccatcttaaaaattgtaattggacctaacacaatcccacaaaa 5109296  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 16163083 - 16163001
Alignment:
Q  136 ggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttg 219  Q
    |||||| | |||||||||| ||||||||| ||||||||  | |||||||| ||| || |||||| |||||||||||||||||||    
T  16163083 ggtggcccgatagcggaaacctgatagcaggtggcccattggatcttgga-gaggctttgatatcatcttaaaaattgtggttg 16163001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 240
Target Start/End: Complemental strand, 35892197 - 35892103
Alignment:
Q  145 atagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaa 240  Q
    ||||| ||||| |||||||| ||||||||| |||||||| ||||||||||||||   ||||| |||| |||| ||| |||||| ||||||| ||||    
T  35892197 atagcagaaatatgatagcaagtggcccaatgaatcttg-aagagactctgataccttcttagaaatcgtggatgggcttaacacaaccccacaaa 35892103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 248
Target Start/End: Complemental strand, 38733292 - 38733190
Alignment:
Q  145 atagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaaccg 244  Q
    |||||||||| ||||||||| |||| |||| | |||||||| ||||||||||||  |||||| |||| ||||||| || |||| ||| | | ||||||||    
T  38733292 atagcggaaacctgatagcaggtggtccaatggatcttgga-gagactctgataccatcttagaaatcgtggttgaacctaacacaatctcacaaaaccg 38733194  T
Q  245 actt 248  Q
    ||||    
T  38733193 actt 38733190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 241
Target Start/End: Original strand, 8870865 - 8870948
Alignment:
Q  157 tgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaa 241  Q
    |||||||| ||||||||| | || ||||| ||||||||||||  |||||| |||| |||||||||| |||| ||||||| |||||    
T  8870865 tgatagcaggtggcccaatggatattgga-gagactctgataccatcttagaaatggtggttggacctaacacaaccccacaaaa 8870948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 22100103 - 22100048
Alignment:
Q  31 cccatttataaacacattgtcagaccatctattatcggatgcaagactctttaaca 86  Q
    |||| ||||||||||||||||||  |||||| ||||||||| | ||||||||||||    
T  22100103 cccacttataaacacattgtcaggtcatctaatatcggatgtaggactctttaaca 22100048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 25137438 - 25137509
Alignment:
Q  103 gattggacatctcaagcgtgtacataaacgacgggtggctcaatagcggaaatctgatagcatgtggcccaa 174  Q
    ||||| |||||| ||||||| ||||||| |||||||||| | ||| ||||||||||| | || |||||||||    
T  25137438 gattgcacatctgaagcgtgaacataaatgacgggtggcccgataacggaaatctgacaacaggtggcccaa 25137509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 5953684 - 5953754
Alignment:
Q  150 ggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttgg 220  Q
    ||||| |||| |||| |||||| |||| |||||||| ||| ||||||||  ||||||||||||| ||||||    
T  5953684 ggaaacctgaaagcaggtggcctaacggatcttggatgaggctctgataccatcttaaaaattgaggttgg 5953754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 219
Target Start/End: Complemental strand, 16706975 - 16706914
Alignment:
Q  157 tgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttg 219  Q
    |||||||| ||| |||||||||||||||| |||| |||||||  ||||||||||||| |||||    
T  16706975 tgatagca-gtgccccaacgaatcttggaggagaatctgataccatcttaaaaattgcggttg 16706914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 27413498 - 27413401
Alignment:
Q  135 gggtggctcaatagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaacc 233  Q
    ||||||| | ||||||||||||||||| || |||| | ||   ||||||| |||| ||||||||| |||||| |||| |||||||||| |||| |||||    
T  27413498 gggtggcccgatagcggaaatctgataacaggtggtctaatagatcttgg-agaggctctgatatcatcttagaaatcgtggttggacctaacacaacc 27413401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 7826076 - 7826128
Alignment:
Q  13 tgtgaagtaaggattactcccatttataaacacattgtcagaccatctattat 65  Q
    ||||| |||||||||   |||| ||||||||||||||||||||||||| ||||    
T  7826076 tgtgaggtaaggattgtccccacttataaacacattgtcagaccatcttttat 7826128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 17468374 - 17468310
Alignment:
Q  22 aggattactcccatttataaacacattgtcagaccatctattatcggatgcaagactctttaaca 86  Q
    |||||| | |||| ||||||||| ||||||||||||||| ||||| ||||   ||||||||||||    
T  17468374 aggattgcccccacttataaacatattgtcagaccatctcttatccgatgtgggactctttaaca 17468310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 44254198 - 44254138
Alignment:
Q  152 aaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaatt 212  Q
    |||||||||||||||||| | |||| |||||| | ||||||||||||| || ||| |||||    
T  44254198 aaatctgatagcatgtggtctaacggatcttgaaggagactctgatatcatgttagaaatt 44254138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 5697 - 5795
Alignment:
Q  145 atagcggaaatctgatagcatgtggcccaacgaatcttggaagagactctgatataatcttaaaaattgtggttggacttaacgcaaccccgcaaaaccg 244  Q
    |||||||||| ||||||||| ||||| ||| | |||||||| ||| ||||||||  |||||| |||| |||||||| | |||| ||||||||||||||||    
T  5697 atagcggaaacctgatagcaggtggctcaatggatcttgga-gaggctctgataccatcttagaaatcgtggttgggcctaacacaaccccgcaaaaccg 5795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 89551 - 89598
Alignment:
Q  201 atcttaaaaattgtggttggacttaacgcaaccccgcaaaaccgactt 248  Q
    |||||||||||||||||||||| |||| ||||| | ||||||||||||    
T  89551 atcttaaaaattgtggttggacctaacacaacctcacaaaaccgactt 89598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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