View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6277_low_37 (Length: 341)

Name: NF6277_low_37
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6277_low_37
NF6277_low_37
[»] chr3 (5 HSPs)
chr3 (17-325)||(1580929-1581260)
chr3 (29-325)||(3663662-3663973)
chr3 (40-232)||(41404076-41404267)
chr3 (244-315)||(41404302-41404373)
chr3 (100-156)||(9493734-9493790)
[»] chr1 (4 HSPs)
chr1 (11-325)||(32984318-32984655)
chr1 (40-232)||(3290523-3290715)
chr1 (113-199)||(44888160-44888246)
chr1 (244-315)||(3290414-3290484)
[»] chr7 (5 HSPs)
chr7 (11-309)||(30464360-30464681)
chr7 (61-325)||(8160824-8161099)
chr7 (26-232)||(39827475-39827681)
chr7 (244-315)||(39827716-39827787)
chr7 (111-202)||(40537781-40537872)
[»] chr2 (6 HSPs)
chr2 (29-211)||(17139792-17139973)
chr2 (40-210)||(9259451-9259617)
chr2 (40-139)||(39809383-39809482)
chr2 (237-315)||(9259665-9259743)
chr2 (74-236)||(31392321-31392483)
chr2 (244-325)||(17140029-17140110)
[»] chr6 (3 HSPs)
chr6 (11-210)||(19228337-19228534)
chr6 (243-315)||(35091963-35092035)
chr6 (167-232)||(35091865-35091930)
[»] chr5 (2 HSPs)
chr5 (47-177)||(11609545-11609675)
chr5 (29-151)||(12893096-12893218)
[»] chr8 (1 HSPs)
chr8 (97-218)||(12735392-12735515)


Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 325
Target Start/End: Complemental strand, 1581260 - 1580929
Alignment:
Q  17 actaaacccagttggacattgcccatacacacgcaacccaggcacatgctcacaacccatgtttgcaagaacgtctgcttacgaattcgcctcacgataa 116  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1581260 actaagcccagttggacattgctcatacacacgcaacccaggcacatgctcacaacccatgtttgcaagagcgtctgcttacgaattcgcctcacgataa 1581161  T
Q  117 gaatgacaaatcttcacttcccactccaaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatccttagttgtctgtaggg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1581160 gaatgacaaatcttcacttcccactccaaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatccttagttgtctgtaggg 1581061  T
Q  217 tatgtaccaccacacttgaa---------------------gcaaaac--ctctctctagcaatttggagaccatcaaagactccctaaagctctgctaa 293  Q
    |||| |||||||||||||||                     |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1581060 tatgcaccaccacacttgaatcaacgtgcaactcaacctttgcaaaacctctctctctagcaatttggagaccatcaaagactccctaaagctctgctaa 1580961  T
Q  294 atatgcattacatctacccaagctatgggaaa 325  Q
    ||||||||||||||||||||||||| ||||||    
T  1580960 atatgcattacatctacccaagctacgggaaa 1580929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 29 - 325
Target Start/End: Original strand, 3663662 - 3663973
Alignment:
Q  29 tggacattgcccatacacacgcaacccaggcacatgctcacaacccatgtttgcaagaacgtctgcttacgaattcgcctcacgataagaatgacaaatc 128  Q
    |||||| ||| ||||||||| |||  ||||| ||||||||||| |||||||||||||| |||||||  || |||| ||||||||| |||||||||||||     
T  3663662 tggacactgctcatacacacacaaatcaggcgcatgctcacaatccatgtttgcaagagcgtctgcacacaaatttgcctcacgaaaagaatgacaaatt 3663761  T
Q  129 ttcacttcccactccaaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatccttagttgtctgtagggtatgtaccacca 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||  |||||| ||    
T  3663762 ttcacttcccactccaaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatctttagttgtttgcagggtccgtaccatca 3663861  T
Q  229 c-----acttgaa-----------gcaaaacctctctctagcaatttggagaccatcaaagactccctaaagctctgctaaatatgcattacatctaccc 312  Q
    |     || || |           |||||||||||||||| |||||||||||||||||||| ||||| |||||||| || |||| ||||||| ||||||     
T  3663862 caatcaacgtgcaattcaaccctcgcaaaacctctctctatcaatttggagaccatcaaaggctccccaaagctctact-aatacgcattacctctacct 3663960  T
Q  313 aagctatgggaaa 325  Q
    ||| || ||||||    
T  3663961 aagttacgggaaa 3663973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 40 - 232
Target Start/End: Original strand, 41404076 - 41404267
Alignment:
Q  40 catacacacgcaacccaggcacatgctcacaacccatgtttgcaagaacgtctgcttacgaattcgcctcacgataagaatgacaaatcttcacttccca 139  Q
    |||||||| ||||| |||||| |  ||||||||||||||||| |||| |||||||  ||||||||| |||||| ||||||||||| |||||||| |||||    
T  41404076 catacacatgcaacacaggcataa-ctcacaacccatgtttgaaagagcgtctgcacacgaattcgtctcacggtaagaatgacagatcttcacgtccca 41404174  T
Q  140 ctccaaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatccttagttgtctgtagggtatgtaccaccacact 232  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||| |||||||||||    
T  41404175 ctccagagcaagcaaccggcgaatttcttgaatgagacgccaaccaacaacacttccatcctaagttgtttgcagggtatgcaccaccacact 41404267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 315
Target Start/End: Original strand, 41404302 - 41404373
Alignment:
Q  244 ctctctctagcaatttggagaccatcaaagactccctaaagctctgctaaatatgcattacatctacccaag 315  Q
    ||||||||| ||||||||||||||| ||| |||| | ||| |||||||||||| || |||||| ||| ||||    
T  41404302 ctctctctaacaatttggagaccattaaaaactctcaaaatctctgctaaatacgcgttacatttactcaag 41404373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 9493790 - 9493734
Alignment:
Q  100 aattcgcctcacgataagaatgacaaatcttcacttcccactccaaagcaagcaatc 156  Q
    ||||||||||||||||| ||||| | ||||| ||||||||||  |||| ||||||||    
T  9493790 aattcgcctcacgataataatgatacatcttaacttcccactttaaagtaagcaatc 9493734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 11 - 325
Target Start/End: Complemental strand, 32984655 - 32984318
Alignment:
Q  11 cagagaactaaacccagttggacattgcccatacacacgcaacccaggcacatgctcacaacccatgtttgcaagaacgtctgcttacgaattcgcctca 110  Q
    ||||||||||| || || |||||||||| ||||||||||||||| || | | |||| |||||||||||| |||||| |||||||  | ||||||||||||    
T  32984655 cagagaactaagcctagctggacattgctcatacacacgcaacctagacgcgtgcttacaacccatgttcgcaagagcgtctgcacatgaattcgcctca 32984556  T
Q  111 cgataagaatgacaaatcttcacttcccactccaaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatccttagttgtct 210  Q
    |||||||||||| |||||| |||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32984555 cgataagaatgataaatctccacttcccactccagagcaagcaatcggcaaatttcttgaatgagacaccaaccaacaacacttccatccttagttgtct 32984456  T
Q  211 gtagggtatgtaccaccacacttgaa---------------------gcaaaacctctc--tctagcaatttggagaccatcaaagactccctaaagctc 287  Q
    | |||||||| |||||||||||||||                     ||||||||||||  ||||||||||||||||||||||||||||||| ||||||     
T  32984455 gcagggtatgcaccaccacacttgaatcaacgtgcaactcaacctttgcaaaacctctctgtctagcaatttggagaccatcaaagactccccaaagctt 32984356  T
Q  288 tgctaaatatgcattacatctacccaagctatgggaaa 325  Q
    ||||||||| |||||||||||||||||| || ||||||    
T  32984355 tgctaaatacgcattacatctacccaagttacgggaaa 32984318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 40 - 232
Target Start/End: Complemental strand, 3290715 - 3290523
Alignment:
Q  40 catacacacgcaacccaggcacatgctcacaacccatgtttgcaagaacgtctgcttacgaattcgcctcacgataagaatgacaaatcttcacttccca 139  Q
    |||||||||||||||||||| ||||||||||||||||||||||| || |||||||  | |||||||||||||||| |||||||||||| ||||||||| |    
T  3290715 catacacacgcaacccaggcgcatgctcacaacccatgtttgcatgagcgtctgcacaagaattcgcctcacgattagaatgacaaattttcacttccaa 3290616  T
Q  140 ctccaaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatccttagttgtctgtagggtatgtaccaccacact 232  Q
    |||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||  ||||||| |||||| | || ||||||||    
T  3290615 ctccaaagcaagcaattgacgaaattcttgaatgagacgccaaccaacaacacttccatccttgattgtctgcagggtacgcacaaccacact 3290523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 199
Target Start/End: Complemental strand, 44888246 - 44888160
Alignment:
Q  113 ataagaatgacaaatcttcacttcccactccaaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatc 199  Q
    ||||||| |||||||||||||||| | ||||||||||| |||| | | ||||||||| ||||||||  |||||||||| ||||||||    
T  44888246 ataagaaagacaaatcttcacttctcgctccaaagcaaacaatagacaaatttcttggatgagacggaaaccaacaacgcttccatc 44888160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 315
Target Start/End: Complemental strand, 3290484 - 3290414
Alignment:
Q  244 ctctctctagcaatttggagaccatcaaagactccctaaagctctgctaaatatgcattacatctacccaag 315  Q
    |||||||||||||||  |||| |||||||||||| | ||||||||||||||||  |||||||||||||||||    
T  3290484 ctctctctagcaattcagagatcatcaaagactctc-aaagctctgctaaatacacattacatctacccaag 3290414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 11 - 309
Target Start/End: Original strand, 30464360 - 30464681
Alignment:
Q  11 cagagaactaaacccagttggacattgcccatacacacgcaacccaggcacatgctcacaacccatgtttgcaagaacgtctgcttacgaattcgcctca 110  Q
    ||||||| ||| || || |||||| | | |||||||||||||||| | | ||||||||||||||| |||||||||| |||||||  ||||||||||||||    
T  30464360 cagagaaataagcctagctggacactactcatacacacgcaaccccgacgcatgctcacaacccaagtttgcaagagcgtctgcacacgaattcgcctca 30464459  T
Q  111 cgataagaatgacaaatcttcacttcccactccaaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatccttagttgtct 210  Q
     ||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  30464460 tgataagaatgacaaatcttcacttcccactccagagcaagcaatatgcgaatttcttcaatgagacgccaaccaacaacacttccattcttagttgtct 30464559  T
Q  211 gtagggtatgtaccaccacacttgaa---------------------gcaaaac--ctctctctagcaatttggagaccatcaaagactccctaaagctc 287  Q
    | |||||||| |||||||||||||||                     |||||||  |||||||||||||||||||||||||| ||||||||| ||||||     
T  30464560 gcagggtatgcaccaccacacttgaattaacgtgcaactcaacttttgcaaaacctctctctctagcaatttggagaccatccaagactccccaaagctt 30464659  T
Q  288 tgctaaatatgcattacatcta 309  Q
    ||||||||| ||||||||||||    
T  30464660 tgctaaatacgcattacatcta 30464681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 61 - 325
Target Start/End: Original strand, 8160824 - 8161099
Alignment:
Q  61 catgctcacaacccatgtttgcaagaacgtctgcttacgaattcgcctcacgataagaatgacaaatcttcacttcccactccaaagcaagcaatcggcg 160  Q
    ||||||||||| |||||||||||||| |||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  8160824 catgctcacaatccatgtttgcaagagcgtctgcacacgaattcgcttcacgataagaatgacaaatcttcacttcccactccaaagcaagcaatcagcg 8160923  T
Q  161 aatttcttgaatgagacgccaaccaacaacacttccatccttagttgtctgtagggtatgtaccaccacacttgaa---------------------gca 239  Q
    |||||||||||||||          |||||||||| ||||||||||||||| |||||||| |||||||||||||||                     |||    
T  8160924 aatttcttgaatgag----------acaacacttctatccttagttgtctgcagggtatgcaccaccacacttgaatcaacttgcaactcaacttttgca 8161013  T
Q  240 aaacctctctctagcaatttggagaccatcaaagactccctaaagctctgctaaatatgcattacatctacccaagctatgggaaa 325  Q
    |||||||||||||| |||||||||| |||| ||||||| | |||| ||||||||||| |||||||||||||||||| || ||||||    
T  8161014 aaacctctctctagaaatttggagatcatccaagactctccaaagttctgctaaatacgcattacatctacccaagttacgggaaa 8161099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 26 - 232
Target Start/End: Original strand, 39827475 - 39827681
Alignment:
Q  26 agttggacattgcccatacacacgcaacccaggcacatgctcacaacccatgtttgcaagaacgtctgcttacgaattcgcctcacgataagaatgacaa 125  Q
    |||| |||| ||| |||||||||||||||||||  ||||||||||||  |||||||||||| |||| ||  || ||||||| ||||||||||||||||||    
T  39827475 agtttgacactgctcatacacacgcaacccaggagcatgctcacaacaaatgtttgcaagagcgtccgcacacaaattcgcttcacgataagaatgacaa 39827574  T
Q  126 atcttcacttcccactccaaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatccttagttgtctgtagggtatgtacca 225  Q
    || ||||| |||||||| | ||||| || |||  |||||||||||||||||||||||||| |||||| ||||||||||||||| || | | |||| ||||    
T  39827575 attttcacgtcccactctagagcaaacagtcgaggaatttcttgaatgagacgccaaccagcaacacctccatccttagttgtttgcaagctatgcacca 39827674  T
Q  226 ccacact 232  Q
    |||||||    
T  39827675 ccacact 39827681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 244 - 315
Target Start/End: Original strand, 39827716 - 39827787
Alignment:
Q  244 ctctctctagcaatttggagaccatcaaagactccctaaagctctgctaaatatgcattacatctacccaag 315  Q
    |||||||||||||||||||||||||||||||| ||  |||||||||||| ||||||||||||||||| ||||    
T  39827716 ctctctctagcaatttggagaccatcaaagacacctcaaagctctgctagatatgcattacatctacacaag 39827787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 202
Target Start/End: Original strand, 40537781 - 40537872
Alignment:
Q  111 cgataagaatgacaaatcttcacttcccactccaaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatcctt 202  Q
    |||||||||||||| |  || | || |||||||||||| | |||||  ||||||| ||| ||||| | ||||||||||| ||||||||||||    
T  40537781 cgataagaatgacacactttaattttccactccaaagctaacaatctacgaattttttggatgagtcaccaaccaacaagacttccatcctt 40537872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 29 - 211
Target Start/End: Original strand, 17139792 - 17139973
Alignment:
Q  29 tggacattgcccatacacacgcaacccaggcacatgctcacaacccatgtttgcaagaacgtctgcttacgaattcgcctcacgataagaatgacaaatc 128  Q
    |||||| ||| |||||||||||||||||||  ||||||||||  ||||||||||||||  ||||||  |||||||| |||||||||||||||||||||||    
T  17139792 tggacactgctcatacacacgcaacccaggtgcatgctcacagtccatgtttgcaagagtgtctgcacacgaattcacctcacgataagaatgacaaatc 17139891  T
Q  129 ttcacttcccactccaaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatccttagttgtctg 211  Q
    ||||||||||||| ||||| ||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||    
T  17139892 ttcacttcccacttcaaagaaagcaatcggcgaatttattgaattagacgccaaccaa-aacacttccatccttagttgtctg 17139973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 40 - 210
Target Start/End: Original strand, 9259451 - 9259617
Alignment:
Q  40 catacacacgcaacccaggcacatgctcacaacccatgtttgcaagaacgtctgcttacgaattcgcctcacgataagaatgacaaatcttcacttccca 139  Q
    |||||||||||||| ||||| |||||||| ||||||||||||||||| ||||| |  || |||||||| ||  |||||||||||||||||||||| ||||    
T  9259451 catacacacgcaactcaggcgcatgctcataacccatgtttgcaagagcgtctacacacaaattcgccccataataagaatgacaaatcttcactcccca 9259550  T
Q  140 ctccaaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatccttagttgtct 210  Q
    ||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9259551 ctccaaagcac----tcggcgaatttcttgaatgagacgccaaccaacaacacttccatccttagttgtct 9259617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 139
Target Start/End: Complemental strand, 39809482 - 39809383
Alignment:
Q  40 catacacacgcaacccaggcacatgctcacaacccatgtttgcaagaacgtctgcttacgaattcgcctcacgataagaatgacaaatcttcacttccca 139  Q
    ||||||||||||||| |||  ||||||||||||||||||||||||||  ||||||  |||||||||| |||||||||||||||||| | |||||||||||    
T  39809482 catacacacgcaacctaggagcatgctcacaacccatgtttgcaagagtgtctgcacacgaattcgcttcacgataagaatgacaatttttcacttccca 39809383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 237 - 315
Target Start/End: Original strand, 9259665 - 9259743
Alignment:
Q  237 gcaaaacctctctctagcaatttggagaccatcaaagactccctaaagctctgctaaatatgcattacatctacccaag 315  Q
    |||||||||||||||||||||| |||||||||||| ||||||| ||||||||  |||||||||||||||||||||||||    
T  9259665 gcaaaacctctctctagcaattcggagaccatcaatgactccccaaagctcttttaaatatgcattacatctacccaag 9259743  T

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Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 74 - 236
Target Start/End: Complemental strand, 31392483 - 31392321
Alignment:
Q  74 catgtttgcaagaacgtctgcttacgaattcgcctcacgataagaatgacaaatcttcacttcccactccaaa-gcaagcaatcggcgaatttcttgaat 172  Q
    ||||||||||||| ||| |||  |  ||||||| |||| |||| || || |||||||||||||| |||||||| |||||||||||  ||||  |||||||    
T  31392483 catgtttgcaagagcgtatgcacaaaaattcgcatcacaataaaaaggaaaaatcttcacttcctactccaaaagcaagcaatcgatgaatc-cttgaat 31392385  T
Q  173 gagacgccaaccaacaacacttccatccttagttgtctgtagggtatgtaccaccacacttgaa 236  Q
    ||||| ||||||||||| |||||||||||||||| |||| |||||  | ||||| |||||||||    
T  31392384 gagacaccaaccaacaatacttccatccttagttatctgcagggtccgcaccactacacttgaa 31392321  T

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Target: chr2; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 244 - 325
Target Start/End: Original strand, 17140029 - 17140110
Alignment:
Q  244 ctctctctagcaatttggagaccatcaaagactccctaaagctctgctaaatatgcattacatctacccaagctatgggaaa 325  Q
    |||||||||||||||||||||||||||||||||||  |||| |||| |||||| ||||||||||||| |||| |||||||||    
T  17140029 ctctctctagcaatttggagaccatcaaagactccacaaagttctgataaatacgcattacatctactcaagttatgggaaa 17140110  T

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Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 19228534 - 19228337
Alignment:
Q  11 cagagaactaaacccagttggacattgcccatacacacgcaacccaggcacatgctcacaacccatgtttgcaagaacgtctgcttacgaattcgcctca 110  Q
    ||||||||||| || ||||||||||||| |||||||||||||||| | | ||||||||||||| ||||||| || |  |||| |  ||||||| |||| |    
T  19228534 cagagaactaagcctagttggacattgctcatacacacgcaaccccgtcgcatgctcacaacctatgtttggaaaagtgtctacacacgaatttgcctta 19228435  T
Q  111 cgataagaatgacaaatcttcacttcccactccaaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatccttagttgtct 210  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  19228434 cgataagaatgacaa-tcttcacttcccactccaa-gcaagcaatcggtgaatttcttgaatgagacgccaaccaacatcactttcatccttagttgtct 19228337  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 315
Target Start/End: Original strand, 35091963 - 35092035
Alignment:
Q  243 cctctctctagcaatttggagaccatcaaagactccctaaagctctgctaaatatgcattacatctacccaag 315  Q
    |||||||||||||||| | |||||||||||||||||| |||||| |||||||||   ||||||||||||||||    
T  35091963 cctctctctagcaattcgaagaccatcaaagactccccaaagctatgctaaatacatattacatctacccaag 35092035  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 35091865 - 35091930
Alignment:
Q  167 ttgaatgagacgccaaccaacaacacttccatccttagttgtctgtagggtatgtaccaccacact 232  Q
    |||| ||||||| ||||||||||||||||||||||||||||| || ||||||   |||||||||||    
T  35091865 ttgattgagacgtcaaccaacaacacttccatccttagttgtgtgcagggtacacaccaccacact 35091930  T

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Target: chr5 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 47 - 177
Target Start/End: Original strand, 11609545 - 11609675
Alignment:
Q  47 acgcaacccaggcacatgctcacaacccatgtttgcaagaacgtctgcttacgaattcgcctcacgataagaatgacaaatcttcacttcccactccaaa 146  Q
    |||||||||| ||| ||||| ||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  11609545 acgcaacccatgcatatgctaacaacccatgtttgcaagagcgtctgcacacgaattcgcctcacgataagaatgacaaattttcacttctcactccaaa 11609644  T
Q  147 gcaagcaatcggcgaatttcttgaatgagac 177  Q
    ||||||||||||| |||||||| ||||||||    
T  11609645 gcaagcaatcggcaaatttcttaaatgagac 11609675  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 151
Target Start/End: Original strand, 12893096 - 12893218
Alignment:
Q  29 tggacattgcccatacacacgcaacccaggcacatgctcacaacccatgtttgcaagaacgtctgcttacgaattcgcctcacgataagaatgacaaatc 128  Q
    |||||| ||| |||||||||||||| ||||  |||||| ||||||||||||||||| |  |||||   ||||||| |   ||||||||||||||||||||    
T  12893096 tggacactgctcatacacacgcaactcaggtgcatgcttacaacccatgtttgcaaaagtgtctgtacacgaatttggtacacgataagaatgacaaatc 12893195  T
Q  129 ttcacttcccactccaaagcaag 151  Q
    |||||||| ||||||||||||||    
T  12893196 ttcacttctcactccaaagcaag 12893218  T

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Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 97 - 218
Target Start/End: Original strand, 12735392 - 12735515
Alignment:
Q  97 acgaattcgcctcacgataagaatgaca--aatcttcacttcccactccaaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacactt 194  Q
    ||||| |||||| ||||||||||| |||  |||||| |||||||| | ||||||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  12735392 acgaactcgccttacgataagaataacacaaatcttaacttcccagtgcaaagcaagtaatcgacggattttttgaatgagacgtcaaccaacaacactt 12735491  T
Q  195 ccatccttagttgtctgtagggta 218  Q
     |||| |||||||| |||||||||    
T  12735492 tcatctttagttgtttgtagggta 12735515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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