View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_low_38 (Length: 340)
Name: NF6277_low_38
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 154 - 324
Target Start/End: Original strand, 8880538 - 8880708
Alignment:
| Q |
154 |
gaaagttagtaaaacgaatttgcttacgcaagaatccattttccatcgagcaaactcaaagcatcagtggaagcgggggttggattcttagcctcaagct |
253 |
Q |
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| T |
8880538 |
gaaagttagtaaaacgaatttgcttacgcaagaatccattttccatcgagcaaactcaaagcatcagtggaagcgggggttggattcttagcctcgagct |
8880637 |
T |
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| Q |
254 |
gactaataagctcaaaaatctccgctcttgtctcactcgccgctttcaatccacgagcagtcccataaaag |
324 |
Q |
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| T |
8880638 |
gactaataagctcaaaaatctccgctcttgtctcactcgccgctttcaatccacgagcagtcccataaaag |
8880708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 176 - 323
Target Start/End: Original strand, 8884662 - 8884809
Alignment:
| Q |
176 |
cttacgcaagaatccattttccatcgagcaaactcaaagcatcagtggaagcgggggttggattcttagcctcaagctgactaataagctcaaaaatctc |
275 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||||||||| || || ||||||||||| || |||||| |||||||||||| |||||| |
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| T |
8884662 |
cttacgcaagaatccattttccattgagcaaactcaaggcatcagtggaagcaggtgtgggattcttagcttccagctgagtaataagctcaacaatctc |
8884761 |
T |
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| Q |
276 |
cgctcttgtctcactcgccgctttcaatccacgagcagtcccataaaa |
323 |
Q |
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| T |
8884762 |
agctctagtttcactcgtcgctttcaatccacgatcagtcccataaaa |
8884809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 8880405 - 8880470
Alignment:
| Q |
21 |
aaagttaacattaataataagcagaatatgagaattcccttccaaacacaaatcattgtctaacaa |
86 |
Q |
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| T |
8880405 |
aaagttaacattaataataagcagaatatgagaattcccttccaaacacaaatcattgtctaacaa |
8880470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 154 - 323
Target Start/End: Original strand, 45073677 - 45073846
Alignment:
| Q |
154 |
gaaagttagtaaaacgaatttgcttacgcaagaatccattttccatcgagcaaactcaaagcatcagtggaagcgggggttggattcttagcctcaagct |
253 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||| ||||||||| |||| |
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| T |
45073677 |
gaaagttagtaaaacgaatttgcttacgcgagaatccattttccatcgagcaaactcaaggcatcagtggaagcaggggtgggaaacttagcctcgagct |
45073776 |
T |
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| Q |
254 |
gactaataagctcaaaaatctccgctcttgtctcactcgccgctttcaatccacgagcagtcccataaaa |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| ||||| || ||||||||||||| |
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| T |
45073777 |
gactaataagctcaaaaatctccgctcttgtctcactcgcggctttcgatccatgatcagtcccataaaa |
45073846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 45073546 - 45073611
Alignment:
| Q |
22 |
aagttaacattaataataagcagaatatgagaa-ttcccttccaaacacaaatcattgtctaacaa |
86 |
Q |
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|||||||| | |||||||||||||| |||| || |||||||||||||||||||||||||||||||| |
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| T |
45073546 |
aagttaacgtcaataataagcagaacatgataagttcccttccaaacacaaatcattgtctaacaa |
45073611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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