View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6277_low_42 (Length: 329)
Name: NF6277_low_42
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_42 |
 | |
|
| [»] scaffold0830 (1 HSPs) |
| | |
|
| [»] scaffold0070 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 5 - 312
Target Start/End: Original strand, 5119215 - 5119522
Alignment:
| Q |
5 |
agcatcaagaagcttgtatgcagaatgcaaagcaatgtgcaaccttcggcatcgaaatctcgttcagattatcagtagttgttcaaatcctgatttcaaa |
104 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||| |||||||||| ||| ||||||| ||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
5119215 |
agcatcaagaagctttgatgcagaatgcaatgcaatgcgcaaccttcgacatagaaatctagttcaaattatgagtagttgttcaaatcctgatttcaaa |
5119314 |
T |
|
| Q |
105 |
tctctagtgatggagtttatgtcaaatggaagtgtggaaaaatggttgtactctgataactattttttggatttcttgcaaaggttgaacataatgatag |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5119315 |
tctctagtgatggagtttatgtcaaatggaagtgtggaaagatggttatactctgataactattttttggatttcttgcaaaggttgaacataatgatag |
5119414 |
T |
|
| Q |
205 |
atgtggcatctgcattggagtatctccatcacggttcttcaataccagtggttcattgtgatttgaagcctagtaatgtgttgctggatgaagatatggt |
304 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5119415 |
atgtggcatctgcattggagtatcttcatcatggttcttcaataccagtggttcattgtgatttgaagcctagtaatgtgttgctggatgaagatatggt |
5119514 |
T |
|
| Q |
305 |
tgcacatg |
312 |
Q |
| |
|
|||||||| |
|
|
| T |
5119515 |
tgcacatg |
5119522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 312
Target Start/End: Original strand, 5101656 - 5101963
Alignment:
| Q |
5 |
agcatcaagaagcttgtatgcagaatgcaaagcaatgtgcaaccttcggcatcgaaatctcgttcagattatcagtagttgttcaaatcctgatttcaaa |
104 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||| |||||||||| ||| ||||||| ||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
5101656 |
agcatcaagaagctttgatgcagaatgcaatgcaatgcgcaaccttcgacatagaaatctagttcaaattatgagtagttgttcaaatcctgatttcaaa |
5101755 |
T |
|
| Q |
105 |
tctctagtgatggagtttatgtcaaatggaagtgtggaaaaatggttgtactctgataactattttttggatttcttgcaaaggttgaacataatgatag |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5101756 |
tctctagtgatggagtttatgtcaaatggaagtgtggaaagatggttatactctgataactattttttggatttcttgcaaaggttgaacataatgatag |
5101855 |
T |
|
| Q |
205 |
atgtggcatctgcattggagtatctccatcacggttcttcaataccagtggttcattgtgatttgaagcctagtaatgtgttgctggatgaagatatggt |
304 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||| ||||||||| |||||||| ||||| | |
|
|
| T |
5101856 |
atgtggcatcagcattggagtatctccatcatggttctttaataccagtggttcattgtgacttgaagcctgctaatgtgttattggatgaaaatatgat |
5101955 |
T |
|
| Q |
305 |
tgcacatg |
312 |
Q |
| |
|
|||||||| |
|
|
| T |
5101956 |
tgcacatg |
5101963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 5080322 - 5080011
Alignment:
| Q |
1 |
aagcagcatcaagaagcttgtatgcagaatgcaaagcaatgtgcaaccttcggcatcgaaatctcgttcagattatcagtagttgttcaaatcctgattt |
100 |
Q |
| |
|
||||| || ||| |||||| ||||||||||||| || ||| |||| ||||||||||||||||| ||| |||| |||| |||||||||||| | |||| |
|
|
| T |
5080322 |
aagcaacaacaaaaagctttaatgcagaatgcaatgctatgcgcaatcttcggcatcgaaatcttgttgagatcatcaccagttgttcaaatgttaattt |
5080223 |
T |
|
| Q |
101 |
caaatctctagtgatggagtttatgtcaaatggaagtgtggaaaaatggttgtactctgataactattttttggatttcttgcaaaggttgaacataatg |
200 |
Q |
| |
|
|| ||| | || |||||||| |||||||||||||| ||||||||||||| ||| |||||||||||||||| | |||||||||||| |||| |||||| |
|
|
| T |
5080222 |
caggtctttggtaatggagttaatgtcaaatggaagcttggaaaaatggttatacactgataactattttttaggtttcttgcaaagattgactataatg |
5080123 |
T |
|
| Q |
201 |
atagatgtggcatctgcattggagtatctccatcacggttcttcaataccagtggttcattgtgatttgaagcctagtaatgtgttgctggatgaagata |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||| |
|
|
| T |
5080122 |
atagatgtggcatctgcattggagtatcttcatcatggttcttcaataccagtggttcattgtgatttgaagcctagcaatgtgttactggatgaaaata |
5080023 |
T |
|
| Q |
301 |
tggttgcacatg |
312 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5080022 |
tggttgcacatg |
5080011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 312
Target Start/End: Complemental strand, 14412625 - 14412322
Alignment:
| Q |
9 |
tcaagaagcttgtatgcagaatgcaaagcaatgtgcaaccttcggcatcgaaatctcgttcagattatcagtagttgttcaaatcctgatttcaaatctc |
108 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| ||||||| |||||| |||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14412625 |
tcaagaagctttgatgcagaatgcaatgcaatgcgcaacctccggcatagaaatctcgtccaaattatcagtagttgttcaaatcctgatttcaaatctc |
14412526 |
T |
|
| Q |
109 |
tagtgatggagtttatgtcaaatggaagtgtggaaaaatggttgtactctgataactattttttggatttcttgcaaaggttgaacataatgatagatgt |
208 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14412525 |
tagtgatggagtttatgtcaaacggaagtttggaaaaatggttatactctaataacaattttttggatttcttgcaaaggttgaacataatgatagatgt |
14412426 |
T |
|
| Q |
209 |
ggcatctgcattggagtatctccatcacggttcttcaataccagtggttcattgtgatttgaagcctagtaatgtgttgctggatgaagatatggttgca |
308 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| |||| ||||| |
|
|
| T |
14412425 |
ggcatctgcattggagtatctccatcatggttcttcaataccagtggttcattgtgacttgaagcctagtaatgtgttactagatgaagctatgattgca |
14412326 |
T |
|
| Q |
309 |
catg |
312 |
Q |
| |
|
|||| |
|
|
| T |
14412325 |
catg |
14412322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 16885933 - 16886244
Alignment:
| Q |
1 |
aagcagcatcaagaagcttgtatgcagaatgcaaagcaatgtgcaaccttcggcatcgaaatctcgttcagattatcagtagttgttcaaatcctgattt |
100 |
Q |
| |
|
||||| |||||||||| || | ||||||||||| |||||| ||| ||||| ||||||||||| ||| || |||| | |||||||||||| ||||| |
|
|
| T |
16885933 |
aagcaacatcaagaagttttgacgcagaatgcaatgcaatgcgcattcttcgacatcgaaatcttgttgaggttattacaagttgttcaaataaagattt |
16886032 |
T |
|
| Q |
101 |
caaatctctagtgatggagtttatgtcaaatggaagtgtggaaaaatggttgtactctgataactattttttggatttcttgcaaaggttgaacataatg |
200 |
Q |
| |
|
||| || | ||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||| ||| |||||||||||||||||||| |||||| |
|
|
| T |
16886033 |
caagtcattggtgatggagtttatgtcaaatggaagtgttgaaaaatggttatactcggataactattgtttagatttcttgcaaaggttgaatataatg |
16886132 |
T |
|
| Q |
201 |
atagatgtggcatctgcattggagtatctccatcacggttcttcaataccagtggttcattgtgatttgaagcctagtaatgtgttgctggatgaagata |
300 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||| |
|
|
| T |
16886133 |
atagatgttgcatctgcattggagtatctccatcatggttcttcaataccagtggttcattgtgatttgaagcctagtaatgtgttactagatgaaaata |
16886232 |
T |
|
| Q |
301 |
tggttgcacatg |
312 |
Q |
| |
|
|||||||||||| |
|
|
| T |
16886233 |
tggttgcacatg |
16886244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 18)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 22 - 312
Target Start/End: Complemental strand, 23258755 - 23258465
Alignment:
| Q |
22 |
atgcagaatgcaaagcaatgtgcaaccttcggcatcgaaatctcgttcagattatcagtagttgttcaaatcctgatttcaaatctctagtgatggagtt |
121 |
Q |
| |
|
||||||||||||| |||||| | || || |||||||||||||| ||| |||||||||| |||||||| |||| |||||||||||| | ||||||||||| |
|
|
| T |
23258755 |
atgcagaatgcaatgcaatgagaaatctacggcatcgaaatctggttaagattatcagcagttgttccaatcttgatttcaaatcattggtgatggagtt |
23258656 |
T |
|
| Q |
122 |
tatgtcaaatggaagtgtggaaaaatggttgtactctgataactattttttggatttcttgcaaaggttgaacataatgatagatgtggcatctgcattg |
221 |
Q |
| |
|
|||||||||||||||||||| |||||||| || || |||||| ||| || |||||||||||||||| || |||||||||||||| |||||||||||| |
|
|
| T |
23258655 |
catgtcaaatggaagtgtggacaaatggttatattcagataaccattgcttaaatttcttgcaaaggttaaatataatgatagatgttgcatctgcattg |
23258556 |
T |
|
| Q |
222 |
gagtatctccatcacggttcttcaataccagtggttcattgtgatttgaagcctagtaatgtgttgctggatgaagatatggttgcacatg |
312 |
Q |
| |
|
|| ||||||||||| |||||||||||||| ||||||||||| ||| | || ||| |||||| ||| |||||||| ||||||||||||||| |
|
|
| T |
23258555 |
gaatatctccatcatggttcttcaatacccgtggttcattgcgatctaaaaccttctaatgtcttgttggatgaaaatatggttgcacatg |
23258465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 26 - 312
Target Start/End: Original strand, 22900323 - 22900609
Alignment:
| Q |
26 |
agaatgcaaagcaatgtgcaaccttcggcatcgaaatctcgttcagattatcagtagttgttcaaatcctgatttcaaatctctagtgatggagtttatg |
125 |
Q |
| |
|
||||||||| ||| || | || || |||||||||||||| ||| |||||||||| |||||||||||| |||||||||| | | ||||||||||| ||| |
|
|
| T |
22900323 |
agaatgcaatgcattgagaaatctacggcatcgaaatctggttaagattatcagcagttgttcaaatattgatttcaaagcattggtgatggagttcatg |
22900422 |
T |
|
| Q |
126 |
tcaaatggaagtgtggaaaaatggttgtactctgataactattttttggatttcttgcaaaggttgaacataatgatagatgtggcatctgcattggagt |
225 |
Q |
| |
|
||||||||||||||||| |||||||| || || |||| | || ||| |||||||||||||||| || |||||||||||||| |||| ||||||||| | |
|
|
| T |
22900423 |
tcaaatggaagtgtggacaaatggttatattcaaataattgttgtttaaatttcttgcaaaggttaaatataatgatagatgttgcatatgcattggaat |
22900522 |
T |
|
| Q |
226 |
atctccatcacggttcttcaataccagtggttcattgtgatttgaagcctagtaatgtgttgctggatgaagatatggttgcacatg |
312 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| ||||||||| | |||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
22900523 |
atctccatcatggttcttcaatacctgtggtccattgtgatctaaagcctagtaatgtcttgctggacgaagatatggttgcacatg |
22900609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 22 - 312
Target Start/End: Complemental strand, 25695911 - 25695621
Alignment:
| Q |
22 |
atgcagaatgcaaagcaatgtgcaaccttcggcatcgaaatctcgttcagattatcagtagttgttcaaatcctgatttcaaatctctagtgatggagtt |
121 |
Q |
| |
|
||||||||||||| || ||| | || || || ||||||||||| || |||||||||| ||||| ||||||| |||||||||||| | ||||||||||| |
|
|
| T |
25695911 |
atgcagaatgcaatgcgatgagaaatctacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtgatggagtt |
25695812 |
T |
|
| Q |
122 |
tatgtcaaatggaagtgtggaaaaatggttgtactctgataactattttttggatttcttgcaaaggttgaacataatgatagatgtggcatctgcattg |
221 |
Q |
| |
|
||||||||||||||||| || |||||||| || || ||||||||| | | ||||||||||||||| || |||||||||||||| |||||||||||| |
|
|
| T |
25695811 |
catgtcaaatggaagtgtagacaaatggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagatgttgcatctgcattg |
25695712 |
T |
|
| Q |
222 |
gagtatctccatcacggttcttcaataccagtggttcattgtgatttgaagcctagtaatgtgttgctggatgaagatatggttgcacatg |
312 |
Q |
| |
|
|| ||||||||||| ||||| |||||||||||||||||||||||| | |||||| ||||| ||| |||||||| ||||||||||||||| |
|
|
| T |
25695711 |
gaatatctccatcatggttcctcaataccagtggttcattgtgatctaaagccttccaatgtcttgttggatgaaaatatggttgcacatg |
25695621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 22 - 312
Target Start/End: Complemental strand, 25341531 - 25341241
Alignment:
| Q |
22 |
atgcagaatgcaaagcaatgtgcaaccttcggcatcgaaatctcgttcagattatcagtagttgttcaaatcctgatttcaaatctctagtgatggagtt |
121 |
Q |
| |
|
||||||||||||| |||||| | || || || ||||||||| | ||| |||||||||| ||||||||||||| |||||||||||| | ||||||||||| |
|
|
| T |
25341531 |
atgcagaatgcaatgcaatgagaaatctacgacatcgaaatatggttaagattatcagcagttgttcaaatcttgatttcaaatcattggtgatggagtt |
25341432 |
T |
|
| Q |
122 |
tatgtcaaatggaagtgtggaaaaatggttgtactctgataactattttttggatttcttgcaaaggttgaacataatgatagatgtggcatctgcattg |
221 |
Q |
| |
|
||||||||||||||||| || || ||||| || || ||||| ||| | |||||||||||||||| || |||||||||||||| |||||||||||| |
|
|
| T |
25341431 |
catgtcaaatggaagtgtagacaattggttatattcaaataacaattgaataaatttcttgcaaaggttaaatataatgatagatgttgcatctgcattg |
25341332 |
T |
|
| Q |
222 |
gagtatctccatcacggttcttcaataccagtggttcattgtgatttgaagcctagtaatgtgttgctggatgaagatatggttgcacatg |
312 |
Q |
| |
|
|| ||||||||||| ||||||||| |||||||||||||||| ||| | |||||| |||||| || |||||||| ||||||||||||||| |
|
|
| T |
25341331 |
gaatatctccatcatggttcttcagtaccagtggttcattgcgatctaaagccttctaatgtcttattggatgaaaatatggttgcacatg |
25341241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 22 - 312
Target Start/End: Complemental strand, 25715744 - 25715454
Alignment:
| Q |
22 |
atgcagaatgcaaagcaatgtgcaaccttcggcatcgaaatctcgttcagattatcagtagttgttcaaatcctgatttcaaatctctagtgatggagtt |
121 |
Q |
| |
|
||||||||||||| || ||| | || || || ||||| ||||| || |||||||||| ||||| ||||||| |||||||||||| | ||||||||||| |
|
|
| T |
25715744 |
atgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagaagttgctcaaatcttgatttcaaatcattggtgatggagtt |
25715645 |
T |
|
| Q |
122 |
tatgtcaaatggaagtgtggaaaaatggttgtactctgataactattttttggatttcttgcaaaggttgaacataatgatagatgtggcatctgcattg |
221 |
Q |
| |
|
||||||||||||||||| ||||||||||| || || |||| |||| | | ||||||||||||||| || |||||||||||||| |||||||||||| |
|
|
| T |
25715644 |
catgtcaaatggaagtgtagaaaaatggttatattcaaataaatattgtctaagtttcttgcaaaggttaaatataatgatagatgttgcatctgcattg |
25715545 |
T |
|
| Q |
222 |
gagtatctccatcacggttcttcaataccagtggttcattgtgatttgaagcctagtaatgtgttgctggatgaagatatggttgcacatg |
312 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||||||||||| | |||||| ||||| ||| |||||||| ||||||||||||||| |
|
|
| T |
25715544 |
gaatatctccatcgtggttcttcaataccagtggttcattgtgatctaaagccttccaatgtcttgttggatgaaaatatggttgcacatg |
25715454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 26 - 312
Target Start/End: Complemental strand, 25323203 - 25322917
Alignment:
| Q |
26 |
agaatgcaaagcaatgtgcaaccttcggcatcgaaatctcgttcagattatcagtagttgttcaaatcctgatttcaaatctctagtgatggagtttatg |
125 |
Q |
| |
|
||||||||| |||||| | || || || ||||||||||| || |||||||||||||||| ||||||| |||||||||||| | ||||||||||| ||| |
|
|
| T |
25323203 |
agaatgcaatgcaatgagaaatctacgacatcgaaatctggtaaagattatcagtagttgctcaaatcttgatttcaaatcattggtgatggagttcatg |
25323104 |
T |
|
| Q |
126 |
tcaaatggaagtgtggaaaaatggttgtactctgataactattttttggatttcttgcaaaggttgaacataatgatagatgtggcatctgcattggagt |
225 |
Q |
| |
|
|||||||||||||| || |||||||| || || ||||||||| | | ||||||| |||||||| || |||||||||||||| |||||||||||||| | |
|
|
| T |
25323103 |
tcaaatggaagtgttgacaaatggttatattcaaataactattgtctaaatttcttacaaaggttaaatataatgatagatgttgcatctgcattggaat |
25323004 |
T |
|
| Q |
226 |
atctccatcacggttcttcaataccagtggttcattgtgatttgaagcctagtaatgtgttgctggatgaagatatggttgcacatg |
312 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||||||||||| | |||||| ||||| || ||||| || ||||||||||||||| |
|
|
| T |
25323003 |
atcttcatcatggttcttcaatacctgtggttcattgtgatctaaagccttccaatgtcttattggataaaaatatggttgcacatg |
25322917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 54 - 312
Target Start/End: Complemental strand, 25476180 - 25475922
Alignment:
| Q |
54 |
catcgaaatctcgttcagattatcagtagttgttcaaatcctgatttcaaatctctagtgatggagtttatgtcaaatggaagtgtggaaaaatggttgt |
153 |
Q |
| |
|
||||||||||| ||| ||||||| ||||||||||||||| ||||||||||| | ||||||||||| |||||||||||||||||||| |||||||| | |
|
|
| T |
25476180 |
catcgaaatcttgttaagattatttgtagttgttcaaatctcgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtggacaaatggttat |
25476081 |
T |
|
| Q |
154 |
actctgataactattttttggatttcttgcaaaggttgaacataatgatagatgtggcatctgcattggagtatctccatcacggttcttcaataccagt |
253 |
Q |
| |
|
| | |||| | || |||| |||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| || |
|
|
| T |
25476080 |
atttaaataattgttgtttgagtttcttgcaaaggttgaatataatgatagatgttgcatctgcattggaatatctccatcatggttcttcaatacctgt |
25475981 |
T |
|
| Q |
254 |
ggttcattgtgatttgaagcctagtaatgtgttgctggatgaagatatggttgcacatg |
312 |
Q |
| |
|
||||||||| ||| | |||||| |||||| || ||||| || ||||||||||||||| |
|
|
| T |
25475980 |
ggttcattgcgatctaaagccttctaatgtcatgttggataaaaatatggttgcacatg |
25475922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 26 - 312
Target Start/End: Complemental strand, 25453529 - 25453243
Alignment:
| Q |
26 |
agaatgcaaagcaatgtgcaaccttcggcatcgaaatctcgttcagattatcagtagttgttcaaatcctgatttcaaatctctagtgatggagtttatg |
125 |
Q |
| |
|
||||||||| |||||| | || || || ||||||||||| || |||||||||| ||||| ||||||| |||||||||||| | || ||||| || ||| |
|
|
| T |
25453529 |
agaatgcaatgcaatgagaaatctacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtaatggaattcatg |
25453430 |
T |
|
| Q |
126 |
tcaaatggaagtgtggaaaaatggttgtactctgataactattttttggatttcttgcaaaggttgaacataatgatagatgtggcatctgcattggagt |
225 |
Q |
| |
|
|||||||||||||| || |||||||| || || ||||||||| | | ||||||||||||||| || |||||||||||||| |||||||||||||| | |
|
|
| T |
25453429 |
tcaaatggaagtgtagacaaatggttatattcaaataactattgtctcagtttcttgcaaaggttaaatataatgatagatgttgcatctgcattggaat |
25453330 |
T |
|
| Q |
226 |
atctccatcacggttcttcaataccagtggttcattgtgatttgaagcctagtaatgtgttgctggatgaagatatggttgcacatg |
312 |
Q |
| |
|
|||| ||||| ||||||||||| || ||||||||||||||| | |||||| |||||| ||| |||||||| ||||||||||||||| |
|
|
| T |
25453329 |
atcttcatcatggttcttcaatgcctgtggttcattgtgatctaaagccttctaatgtcttgttggatgaaaatatggttgcacatg |
25453243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 22 - 312
Target Start/End: Complemental strand, 25647563 - 25647273
Alignment:
| Q |
22 |
atgcagaatgcaaagcaatgtgcaaccttcggcatcgaaatctcgttcagattatcagtagttgttcaaatcctgatttcaaatctctagtgatggagtt |
121 |
Q |
| |
|
|||||||||| || |||||| | || || || ||||||||||| || |||||||||| ||||| ||||||| |||||||||||| | ||||||||||| |
|
|
| T |
25647563 |
atgcagaatgtaatgcaatgagaaatctacgacatcgaaatctggtaaagattatcagaagttgatcaaatcttgatttcaaatcattggtgatggagtt |
25647464 |
T |
|
| Q |
122 |
tatgtcaaatggaagtgtggaaaaatggttgtactctgataactattttttggatttcttgcaaaggttgaacataatgatagatgtggcatctgcattg |
221 |
Q |
| |
|
||||||||||||||||| || |||||||| || || ||||||||| | | |||||||||||||||| || |||||||||||||| ||||| | |||| |
|
|
| T |
25647463 |
catgtcaaatggaagtgtagacaaatggttatattcaaataactattgtctaaatttcttgcaaaggttaaatataatgatagatgttgcatcagaattg |
25647364 |
T |
|
| Q |
222 |
gagtatctccatcacggttcttcaataccagtggttcattgtgatttgaagcctagtaatgtgttgctggatgaagatatggttgcacatg |
312 |
Q |
| |
|
|| ||||||||||| ||||| ||||||||||||||||| || ||| | |||||| ||||| ||| |||||||| ||||||||||||||| |
|
|
| T |
25647363 |
gaatatctccatcatggttcatcaataccagtggttcaatgagatctaaagccttcaaatgtcttgttggatgaaaatatggttgcacatg |
25647273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 22 - 312
Target Start/End: Complemental strand, 25800829 - 25800539
Alignment:
| Q |
22 |
atgcagaatgcaaagcaatgtgcaaccttcggcatcgaaatctcgttcagattatcagtagttgttcaaatcctgatttcaaatctctagtgatggagtt |
121 |
Q |
| |
|
||||||||||||| || ||| | || || || ||||||||| | || |||||||||| ||||| ||||||| |||||||||||| | ||||||||||| |
|
|
| T |
25800829 |
atgcagaatgcaatgcgatgagaaatctacgtcatcgaaatttggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtgatggagtt |
25800730 |
T |
|
| Q |
122 |
tatgtcaaatggaagtgtggaaaaatggttgtactctgataactattttttggatttcttgcaaaggttgaacataatgatagatgtggcatctgcattg |
221 |
Q |
| |
|
||||||||||||||||| || |||||||| || || ||||||||| | | ||||||| |||||||| || |||||||||||||| ||||||||| | |
|
|
| T |
25800729 |
catgtcaaatggaagtgtagacaaatggttatattcaaataactattgtctaaatttcttacaaaggttaaatataatgatagatgttgcatctgcagta |
25800630 |
T |
|
| Q |
222 |
gagtatctccatcacggttcttcaataccagtggttcattgtgatttgaagcctagtaatgtgttgctggatgaagatatggttgcacatg |
312 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||| ||| | |||||| |||||| || |||||||| ||||||||||||||| |
|
|
| T |
25800629 |
gaatatctccatcatggttcttcaataccagtggttcattgcgatctaaagccttctaatgtcttattggatgaaaatatggttgcacatg |
25800539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 54 - 312
Target Start/End: Original strand, 24912625 - 24912883
Alignment:
| Q |
54 |
catcgaaatctcgttcagattatcagtagttgttcaaatcctgatttcaaatctctagtgatggagtttatgtcaaatggaagtgtggaaaaatggttgt |
153 |
Q |
| |
|
||||||||||| || |||||||||| ||||| ||||||| |||||||||||| | ||||||||||| ||||||||||||||||| || |||||||| | |
|
|
| T |
24912625 |
catcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagacaaatggttat |
24912724 |
T |
|
| Q |
154 |
actctgataactattttttggatttcttgcaaaggttgaacataatgatagatgtggcatctgcattggagtatctccatcacggttcttcaataccagt |
253 |
Q |
| |
|
| || ||||||||| | | ||||||||||||||| || |||||||||||||| |||||||||||||| ||||| |||| ||||||||||| || || |
|
|
| T |
24912725 |
attcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcttggttcttcaatgcctgt |
24912824 |
T |
|
| Q |
254 |
ggttcattgtgatttgaagcctagtaatgtgttgctggatgaagatatggttgcacatg |
312 |
Q |
| |
|
||||||||||||| | |||||| ||||| ||| |||||||| ||||||||||||||| |
|
|
| T |
24912825 |
ggttcattgtgatctaaagccttccaatgtcttgttggatgaaaatatggttgcacatg |
24912883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 22 - 309
Target Start/End: Complemental strand, 25570437 - 25570150
Alignment:
| Q |
22 |
atgcagaatgcaaagcaatgtgcaaccttcggcatcgaaatctcgttcagattatcagtagttgttcaaatcctgatttcaaatctctagtgatggagtt |
121 |
Q |
| |
|
||||||||||||| |||||| | || || || ||||||||||| || |||||||||||||||| ||||||| |||||||||||| | ||||||||||| |
|
|
| T |
25570437 |
atgcagaatgcaatgcaatgagaaatctacgacatcgaaatctggtaaagattatcagtagttgctcaaatcttgatttcaaatcattggtgatggagtt |
25570338 |
T |
|
| Q |
122 |
tatgtcaaatggaagtgtggaaaaatggttgtactctgataactattttttggatttcttgcaaaggttgaacataatgatagatgtggcatctgcattg |
221 |
Q |
| |
|
||||||||||||||||| || |||||||| || || ||||||||| | | ||||||||||||||| || |||||||||||||| |||||||||||| |
|
|
| T |
25570337 |
catgtcaaatggaagtgtagacaaatggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagatgttgcatctgcattg |
25570238 |
T |
|
| Q |
222 |
gagtatctccatcacggttcttcaataccagtggttcattgtgatttgaagcctagtaatgtgttgctggatgaagatatggttgcac |
309 |
Q |
| |
|
| ||||| ||||| ||||||||||| || |||||||| |||||| | ||||| ||||| || |||||||| |||||||||||| |
|
|
| T |
25570237 |
aaatatcttcatcatggttcttcaatgcctgtggttcactgtgatctaaagccctccaatgtcatgttggatgaaaatatggttgcac |
25570150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 22 - 312
Target Start/End: Complemental strand, 25686201 - 25685908
Alignment:
| Q |
22 |
atgcagaatgcaaagcaatgtgcaaccttcggcatcgaaatctcgttcagattatcagtagttgttcaaatcctgatttcaaatctctagtgatggagtt |
121 |
Q |
| |
|
||||||||||||| || ||| | || || || ||||||||||| || |||||||| ||||||| ||||||| |||||| ||||| | ||||||||||| |
|
|
| T |
25686201 |
atgcagaatgcaatgcgatgagaaatctacgacatcgaaatctagtaaagattatcggtagttgctcaaatcttgattttaaatcattggtgatggagtt |
25686102 |
T |
|
| Q |
122 |
tatgtcaaatggaagtgtggaaaaatggttgtactc---tgataactattttttggatttcttgcaaaggttgaacataatgatagatgtggcatctgca |
218 |
Q |
| |
|
||||||||||||||||| || |||||||| || || | ||||||||| | | ||||||| |||||||| || |||||||||||||| ||||||||| |
|
|
| T |
25686101 |
catgtcaaatggaagtgtagacaaatggttatattcaaataataactattgtctaaatttcttacaaaggttaaatataatgatagatgttgcatctgca |
25686002 |
T |
|
| Q |
219 |
ttggagtatctccatcacggttcttcaataccagtggttcattgtgatttgaagcctagtaatgtgttgctggatgaagatatggttgcacatg |
312 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||| ||||||||||| ||| | |||||| ||||| ||| |||||||| ||||||||||||||| |
|
|
| T |
25686001 |
ttggaatatcttcatcatggttcttcaatacctgtggttcattgcgatctaaagccttcgaatgtcttgttggatgaaaatatggttgcacatg |
25685908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 22 - 312
Target Start/End: Complemental strand, 25605188 - 25604898
Alignment:
| Q |
22 |
atgcagaatgcaaagcaatgtgcaaccttcggcatcgaaatctcgttcagattatcagtagttgttcaaatcctgatttcaaatctctagtgatggagtt |
121 |
Q |
| |
|
||||||||||||| || ||| | || || || ||||| ||||| || |||||||||| ||||| ||||||| |||||||||||| | ||||||||||| |
|
|
| T |
25605188 |
atgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtgatggagtt |
25605089 |
T |
|
| Q |
122 |
tatgtcaaatggaagtgtggaaaaatggttgtactctgataactattttttggatttcttgcaaaggttgaacataatgatagatgtggcatctgcattg |
221 |
Q |
| |
|
||||||||||||||||| ||||||||||| || || ||||||||| | | ||||||| |||||||| || |||||||||||||| |||||||||||| |
|
|
| T |
25605088 |
catgtcaaatggaagtgtagaaaaatggttatattcaaataactattgtctaaatttcttacaaaggttaaatataatgatagatgttgcatctgcattg |
25604989 |
T |
|
| Q |
222 |
gagtatctccatcacggttcttcaataccagtggttcattgtgatttgaagcctagtaatgtgttgctggatgaagatatggttgcacatg |
312 |
Q |
| |
|
|| ||||| ||||| |||||||||||||| ||||||||||| ||| | |||||| ||||| || ||||| || ||||||| ||||||| |
|
|
| T |
25604988 |
gaatatcttcatcatggttcttcaatacctgtggttcattgagatctaaagccttcaaatgtcttattggataaaaatatggtagcacatg |
25604898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 176 - 312
Target Start/End: Complemental strand, 25490594 - 25490458
Alignment:
| Q |
176 |
tttcttgcaaaggttgaacataatgatagatgtggcatctgcattggagtatctccatcacggttcttcaataccagtggttcattgtgatttgaagcct |
275 |
Q |
| |
|
||||||||||||||| || |||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| || ||||||||||||||| | |||||| |
|
|
| T |
25490594 |
tttcttgcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcctgtggttcattgtgatctaaagcct |
25490495 |
T |
|
| Q |
276 |
agtaatgtgttgctggatgaagatatggttgcacatg |
312 |
Q |
| |
|
||||| ||| |||||||| ||||||||||||||| |
|
|
| T |
25490494 |
tccaatgtcttgttggatgaaaatatggttgcacatg |
25490458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 22 - 207
Target Start/End: Original strand, 24874966 - 24875151
Alignment:
| Q |
22 |
atgcagaatgcaaagcaatgtgcaaccttcggcatcgaaatctcgttcagattatcagtagttgttcaaatcctgatttcaaatctctagtgatggagtt |
121 |
Q |
| |
|
||||||||||||| |||||| | || || || ||||||||||| || |||||||||||||||| ||||||| |||||||||||| | ||||||||||| |
|
|
| T |
24874966 |
atgcagaatgcaatgcaatgagaaatctacgtcatcgaaatctggtaaagattatcagtagttgctcaaatcttgatttcaaatcattggtgatggagtt |
24875065 |
T |
|
| Q |
122 |
tatgtcaaatggaagtgtggaaaaatggttgtactctgataactattttttggatttcttgcaaaggttgaacataatgatagatg |
207 |
Q |
| |
|
||||||||||||||||| || | ||||| || || ||||||||| | | ||||||||||||||| || ||||||||||||| |
|
|
| T |
24875066 |
catgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagatg |
24875151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 25311550 - 25311445
Alignment:
| Q |
22 |
atgcagaatgcaaagcaatgtgcaaccttcggcatcgaaatctcgttcagattatcagtagttgttcaaatcctgatttcaaatctctagtgatggagtt |
121 |
Q |
| |
|
||||||||||||| |||||| | || || || ||||||||||| ||| |||||||||| ||||||||||||| |||||||||||| | ||||||||||| |
|
|
| T |
25311550 |
atgcagaatgcaatgcaatgagaaatctacgacatcgaaatctggttaagattatcagcagttgttcaaatcttgatttcaaatcattggtgatggagtt |
25311451 |
T |
|
| Q |
122 |
tatgtc |
127 |
Q |
| |
|
||||| |
|
|
| T |
25311450 |
catgtc |
25311445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 24875157 - 24875229
Alignment:
| Q |
240 |
tcttcaataccagtggttcattgtgatttgaagcctagtaatgtgttgctggatgaagatatggttgcacatg |
312 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||| ||||| ||| |||||||| ||||||||||||||| |
|
|
| T |
24875157 |
tcttcaataccagtggttcattgtgatctaaagccttccaatgtcttgttggatgaaaatatggttgcacatg |
24875229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 8 - 312
Target Start/End: Complemental strand, 10324418 - 10324114
Alignment:
| Q |
8 |
atcaagaagcttgtatgcagaatgcaaagcaatgtgcaaccttcggcatcgaaatctcgttcagattatcagtagttgttcaaatcctgatttcaaatct |
107 |
Q |
| |
|
||||| |||||| ||||||||||||| | |||| | || || || ||||||||||| ||| |||||||||||||||||||||||| |||||||||| | |
|
|
| T |
10324418 |
atcaacaagctttgatgcagaatgcaatgtaatgagaaatctacgacatcgaaatctggttaagattatcagtagttgttcaaatcatgatttcaaagca |
10324319 |
T |
|
| Q |
108 |
ctagtgatggagtttatgtcaaatggaagtgtggaaaaatggttgtactctgataactattttttggatttcttgcaaaggttgaacataatgatagatg |
207 |
Q |
| |
|
| ||| ||||||| |||||||||||||||||||| | ||||| || || |||||||||| || |||||||||| ||||| || ||||||||||||| |
|
|
| T |
10324318 |
ttggtgctggagttcatgtcaaatggaagtgtggacgattggttatattcagataactattgcttaaatttcttgcataggttaaatataatgatagatg |
10324219 |
T |
|
| Q |
208 |
tggcatctgcattggagtatctccatcacggttcttcaataccagtggttcattgtgatttgaagcctagtaatgtgttgctggatgaagatatggttgc |
307 |
Q |
| |
|
| |||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| | |||||| |||||| ||| |||||||| |||||||||| |
|
|
| T |
10324218 |
ttgcatctgcattggaatatctccatcatggttcttcaatacccgtggttcattgtgatctaaagccttctaatgtcttgttggatgaaaatatggttgc |
10324119 |
T |
|
| Q |
308 |
acatg |
312 |
Q |
| |
|
||||| |
|
|
| T |
10324118 |
acatg |
10324114 |
T |
|
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Target: scaffold0830 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0830
Description:
Target: scaffold0830; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 26 - 312
Target Start/End: Original strand, 4043 - 4329
Alignment:
| Q |
26 |
agaatgcaaagcaatgtgcaaccttcggcatcgaaatctcgttcagattatcagtagttgttcaaatcctgatttcaaatctctagtgatggagtttatg |
125 |
Q |
| |
|
||||||||| |||||| | || || || ||||||||||| ||| |||||||||| ||||||||||||| |||||||||||| | ||||||||||| ||| |
|
|
| T |
4043 |
agaatgcaatgcaatgagaaatctacgacatcgaaatctggttaagattatcagcagttgttcaaatcttgatttcaaatcattggtgatggagttcatg |
4142 |
T |
|
| Q |
126 |
tcaaatggaagtgtggaaaaatggttgtactctgataactattttttggatttcttgcaaaggttgaacataatgatagatgtggcatctgcattggagt |
225 |
Q |
| |
|
|||||||||||||| || |||||||| || || |||| || | | | |||||||||||||||| || |||||||||||||| ||||| |||||||| | |
|
|
| T |
4143 |
tcaaatggaagtgtagacaaatggttatattcaaataaataatgtataaatttcttgcaaaggttaaatataatgatagatgttgcatcagcattggaat |
4242 |
T |
|
| Q |
226 |
atctccatcacggttcttcaataccagtggttcattgtgatttgaagcctagtaatgtgttgctggatgaagatatggttgcacatg |
312 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||||||| ||| | |||||| ||||| ||| |||||||| ||||||||||||||| |
|
|
| T |
4243 |
atctacatcatggttcttcaatacctgtggttcattgagatctaaagccttcaaatgtcttgttggatgaaaatatggttgcacatg |
4329 |
T |
|
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Target: scaffold0070 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 22 - 312
Target Start/End: Original strand, 16553 - 16843
Alignment:
| Q |
22 |
atgcagaatgcaaagcaatgtgcaaccttcggcatcgaaatctcgttcagattatcagtagttgttcaaatcctgatttcaaatctctagtgatggagtt |
121 |
Q |
| |
|
||||||||||||| || ||| | || || || ||||||||| | || |||||||||| ||||| ||||||| |||||||||||| | ||||||||||| |
|
|
| T |
16553 |
atgcagaatgcaatgcgatgagaaatctacgacatcgaaatttggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtgatggagtt |
16652 |
T |
|
| Q |
122 |
tatgtcaaatggaagtgtggaaaaatggttgtactctgataactattttttggatttcttgcaaaggttgaacataatgatagatgtggcatctgcattg |
221 |
Q |
| |
|
||||||||||||||||| || | ||||| || || ||||||||| | | ||||||||||||||| || ||||||||||| || |||||||||||| |
|
|
| T |
16653 |
catgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagaagttgcatctgcattg |
16752 |
T |
|
| Q |
222 |
gagtatctccatcacggttcttcaataccagtggttcattgtgatttgaagcctagtaatgtgttgctggatgaagatatggttgcacatg |
312 |
Q |
| |
|
|| ||||| ||||| ||||||||||| || ||||||||||||||| | |||||| ||||| ||| |||||||| ||||||||||||||| |
|
|
| T |
16753 |
gaatatcttcatcatggttcttcaatgcctgtggttcattgtgatctaaagccttccaatgtcttgttggatgaaaatatggttgcacatg |
16843 |
T |
|
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