View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_low_44 (Length: 323)
Name: NF6277_low_44
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 285
Target Start/End: Original strand, 9837234 - 9837504
Alignment:
| Q |
13 |
aaaatacccaagattttactaccagagtgaatatgtattgttccacttttgccctcatgcaggaggttaatgtggaaagtccatatgttaatttcaacac |
112 |
Q |
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| T |
9837234 |
aaaatacccaagattttactaccagagtgaacatgcattgttccacttttgccctcatgcaggaggttaatgtggaaagtccatatgttaatttcaacac |
9837333 |
T |
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| Q |
113 |
ctttgagaaatgtgagaatcattgcccctccaatacatattatggttcctaacaccttagtctttcctgctgccgtttgtaaattcaatctttcgaaact |
212 |
Q |
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| T |
9837334 |
ctttgagaaatgtgagaatcattgcccctccaatacatattatggttcctaacaccttagtctttcctgctgccgtttctaaattcaatctttcgaaact |
9837433 |
T |
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| Q |
213 |
aaacaatattgaaccaaaatatacaaaaacaaattaatcagttataaactgaatcattagtaaactataatgt |
285 |
Q |
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| T |
9837434 |
aaacaa-attgaaccaaaatatac-aaaacaaattaatcagttataaactaaatcattagtgaactataatgt |
9837504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 51 - 244
Target Start/End: Original strand, 1225767 - 1225959
Alignment:
| Q |
51 |
tgttccacttttgccctcatgcaggaggttaatgtggaaagtccatatgttaatttcaacacctttgagaaatgtgagaatcattgcccctccaatacat |
150 |
Q |
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| T |
1225767 |
tgttccattttttcccttatgcaagaggttaatgtggaaggtccatatattaatttcaacacctttgagaaatgttaacaacattgcccctccaattcct |
1225866 |
T |
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| Q |
151 |
attatggttcctaacaccttagtctttcctgctgccgtttgtaaattcaatctttcgaaactaaacaatattgaaccaaaatatacaaaaacaa |
244 |
Q |
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| T |
1225867 |
gttattgttcccaacaccttagctttgcctgctgccgtttggaaattcaatctttcataactaagcaa-attgaaagaaattatacaaaaacaa |
1225959 |
T |
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