View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6277_low_48 (Length: 300)

Name: NF6277_low_48
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6277_low_48
NF6277_low_48
[»] chr3 (1 HSPs)
chr3 (8-300)||(53128158-53128450)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 8 - 300
Target Start/End: Original strand, 53128158 - 53128450
Alignment:
Q  8 gagcacagatgcgtaagataggtgacaaatttctatttcatagatgttatgacttacaaatgatacgatacatcaactaatggggtctccaaatgagtgg 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  53128158 gagcccagatgcgtaagataggtgacaaatttctatttcatagatgttatgacttacaaatgatatgatacatcaactaatggggtctccaaatgagtgg 53128257  T
Q  108 cgaccacatagacctgaagctggagattttggaagccaaaaccaaaagcaacaccaccagcgccgcgacgccccaaggtgacgatcctcctccttctgtt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  53128258 cgaccacatagacctgaagctggagattttggaagccaaaaccaaaagcaacaccaccagcgccgcaacgccccaaggtgacgatcctcctccttctgtt 53128357  T
Q  208 tgtgtgcgtgattgtattaaccgtcgaccaaagaaatccacctgaattacaaaccgtggcccgcatttggagatgaagtatgcaataaaaatc 300  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53128358 tgtgcgcgtgattgtattaaccgtcgaccaaagaaatccaccggaattacaaaccgtggcccgcatttggagatgaagtatgcaataaaaatc 53128450  T

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