View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6277_low_49 (Length: 297)

Name: NF6277_low_49
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6277_low_49
NF6277_low_49
[»] chr5 (4 HSPs)
chr5 (19-289)||(15402412-15402682)
chr5 (92-212)||(15400879-15400999)
chr5 (126-225)||(41377811-41377910)
chr5 (126-222)||(43281128-43281224)
[»] chr2 (1 HSPs)
chr2 (131-222)||(42975800-42975891)
[»] chr1 (3 HSPs)
chr1 (126-225)||(50204523-50204622)
chr1 (126-177)||(43866283-43866334)
chr1 (126-222)||(33966642-33966738)
[»] chr7 (4 HSPs)
chr7 (126-222)||(32368114-32368210)
chr7 (126-222)||(23636693-23636789)
chr7 (134-222)||(46082472-46082560)
chr7 (126-218)||(19781082-19781174)
[»] chr8 (2 HSPs)
chr8 (126-269)||(36881520-36881662)
chr8 (126-158)||(1468979-1469011)
[»] chr6 (4 HSPs)
chr6 (127-222)||(25101031-25101126)
chr6 (127-222)||(6539490-6539585)
chr6 (126-164)||(18133896-18133934)
chr6 (126-164)||(23890008-23890046)
[»] chr3 (3 HSPs)
chr3 (127-222)||(7227137-7227232)
chr3 (127-221)||(50063918-50064012)
chr3 (126-162)||(43061133-43061169)
[»] chr4 (2 HSPs)
chr4 (126-219)||(10601679-10601772)
chr4 (126-220)||(55911185-55911279)


Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 15402682 - 15402412
Alignment:
Q  19 ataagcatatctttttaaggacaagatattcttttataactcacgctatcaaatggatccgacaacaactacaacaatcacgccttatctcacaaactga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15402682 ataagcatatctttttaaggacaagatattcttttataactcacgctatcaaatggatccgacaacaactacaacaatcacgccttatctcacaaactga 15402583  T
Q  119 ggctggtttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15402582 ggctggtttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttt 15402483  T
Q  219 tgctttgattctcctttgtttcatctgttcttactctattttctctgttttgtttgcttgtttcctatgct 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15402482 tgctttgattctcctttgtttcatctgttcttactctattttctctgttttgtttgcttgtttcctctgct 15402412  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 92 - 212
Target Start/End: Complemental strand, 15400999 - 15400879
Alignment:
Q  92 acaatcacgccttatctcacaaactgaggctggtttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcg 191  Q
    |||||||  |||||||||||||||||||| ||| ||||| |||| |||||||||||||||||||||  ||||| ||||| |||||  |||| ||||||||    
T  15400999 acaatcataccttatctcacaaactgaggttggcttgtaatcagaatcgagtgctggttcgtaggaccgtacgatcctacgtcccgcggcacctcaatcg 15400900  T
Q  192 tacttcgactttactcaggtt 212  Q
    |||||||||||||||||||||    
T  15400899 tacttcgactttactcaggtt 15400879  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 126 - 225
Target Start/End: Complemental strand, 41377910 - 41377811
Alignment:
Q  126 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgctttg 225  Q
    ||||||||||||| ||| ||||||| ||||||| ||||| |||||  ||||| |||| ||||||||| |||||||||||||||||||||||| |||||||    
T  41377910 ttgtagtcaggattgagagctggtttgtaggatcgtacgatcctacttcccacggcacctcaatcgtgcttcgactttactcaggttcgtttctgctttg 41377811  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 43281224 - 43281128
Alignment:
Q  126 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 222  Q
    ||||||||||||||  |||||||||| |||||| ||||| | |||  ||||| |||| ||||||| | |||||||||||||||||||||||||||||    
T  43281224 ttgtagtcaggatctcgtgctggttcataggatcgtacgattctacatcccacggcacctcaatcatgcttcgactttactcaggttcgtttttgct 43281128  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 42975891 - 42975800
Alignment:
Q  131 gtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 222  Q
    |||||||| |||| |||||||||||||| ||||| ||||| |||||| ||||||||||||||||||| ||||||||||| ||||||||||||    
T  42975891 gtcaggatagagttctggttcgtaggatcgtacgatcctacgtcccacggcatctcaatcgtacttcaactttactcagcttcgtttttgct 42975800  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 126 - 225
Target Start/End: Original strand, 50204523 - 50204622
Alignment:
Q  126 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgctttg 225  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||| || |||  ||| ||||||||| |||||||||||||||||||| ||||| |||||    
T  50204523 ttgtagtcaggatcgagtgctggttcgtaggatcgtatgatcctacgttccacagcacctcaatcgtgcttcgactttactcaggttcattttttctttg 50204622  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 43866283 - 43866334
Alignment:
Q  126 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtccca 177  Q
    |||||||||||||||||||||||||||||||||  |||| ||||||| ||||    
T  43866283 ttgtagtcaggatcgagtgctggttcgtaggatcttacgatcctatggccca 43866334  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 33966642 - 33966738
Alignment:
Q  126 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 222  Q
    |||||| |||||||||||||||| |||||||||  |||| | ||| || ||| |||| ||||| ||| ||| ||||| ||||  |||||||||||||    
T  33966642 ttgtagccaggatcgagtgctggctcgtaggatcttacgattctacgtgccacggcacctcaaccgtgctttgacttcactccagttcgtttttgct 33966738  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 32368114 - 32368210
Alignment:
Q  126 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 222  Q
    |||||||| || ||||||||||||||||||||| |||||  |||| |||||| ||||||||||  || ||||||||||||||| |||||||||||||    
T  32368114 ttgtagtccgggtcgagtgctggttcgtaggatcgtacgaccctacgtcccacggcatctcaactgtgcttcgactttactcatgttcgtttttgct 32368210  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 23636693 - 23636789
Alignment:
Q  126 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 222  Q
    ||||||||||||||||||||||||||||||| | ||||  |   | |||| | |||| ||||||||| |||||||||||| |||||| |||||||||    
T  23636693 ttgtagtcaggatcgagtgctggttcgtaggttcgtacaatttgacgtccaacggcacctcaatcgtgcttcgactttacccaggtttgtttttgct 23636789  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 46082560 - 46082472
Alignment:
Q  134 aggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 222  Q
    |||||| |||||||| || |||||| ||||| | |||||||||   ||| ||||| ||| |||||||||||||| | ||||||||||||    
T  46082560 aggatccagtgctggctcataggatcgtacgattctatgtccctccgcacctcaaccgtgcttcgactttactccgattcgtttttgct 46082472  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 19781174 - 19781082
Alignment:
Q  126 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttt 218  Q
    |||||||||||| |||||||||||| |||| || ||||| |||||  ||| | | || |||||| || || |||||||||||| | |||||||    
T  19781174 ttgtagtcaggaacgagtgctggtttgtagaatagtacgatcctacatccaacgacacctcaattgtgctccgactttactcaaggtcgtttt 19781082  T

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Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 126 - 269
Target Start/End: Original strand, 36881520 - 36881662
Alignment:
Q  126 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgctttg 225  Q
    ||||| ||||||| ||||||||||| ||||||| || || ||||| |||||| |||| |||||| || |||| |||||||||||||||||||||||| ||    
T  36881520 ttgtattcaggatagagtgctggtttgtaggatcgttcgatcctacgtcccaaggcacctcaattgtgcttcaactttactcaggttcgtttttgctctg 36881619  T
Q  226 attctcctttgtttcatctgttcttactctattttctctgtttt 269  Q
     || |||| |||||  |||||| ||  ||| |||||||||||||    
T  36881620 -ttttcctctgtttgctctgtttttcttctgttttctctgtttt 36881662  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 1468979 - 1469011
Alignment:
Q  126 ttgtagtcaggatcgagtgctggttcgtaggat 158  Q
    |||||||||||||||||||||||||||||||||    
T  1468979 ttgtagtcaggatcgagtgctggttcgtaggat 1469011  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 222
Target Start/End: Complemental strand, 25101126 - 25101031
Alignment:
Q  127 tgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 222  Q
    ||||| |||||||||||||||| |||||||||  |||| | |||||||||| |||| ||||| ||| ||||||||| |||| ||||||||||||||    
T  25101126 tgtagccaggatcgagtgctggctcgtaggatcttacgattctatgtcccacggcacctcaaccgtgcttcgacttcactccggttcgtttttgct 25101031  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 222
Target Start/End: Complemental strand, 6539585 - 6539490
Alignment:
Q  127 tgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 222  Q
    |||||| ||||||||||||||| ||||||||| ||| | |||||   |||| | |||||||| ||| |||| ||||||||||||||| ||||||||    
T  6539585 tgtagtaaggatcgagtgctggatcgtaggatcgtatgatcctacaccccacgtcatctcaaccgtgcttcaactttactcaggttcatttttgct 6539490  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 18133934 - 18133896
Alignment:
Q  126 ttgtagtcaggatcgagtgctggttcgtaggattgtacg 164  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  18133934 ttgtagtcaggatcgagtgctggctcgtaggattgtacg 18133896  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 23890046 - 23890008
Alignment:
Q  126 ttgtagtcaggatcgagtgctggttcgtaggattgtacg 164  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  23890046 ttgtagtcaggatcgagtgctggctcgtaggatcgtacg 23890008  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 7227137 - 7227232
Alignment:
Q  127 tgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 222  Q
    |||||||||||| ||||||||| || |||||||||||| | ||| ||||||  ||| ||| | | | |||||||||||||| ||||||||||||||    
T  7227137 tgtagtcaggattgagtgctggctcttaggattgtacgattctacgtcccacagcacctcgaccatgcttcgactttactccggttcgtttttgct 7227232  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 221
Target Start/End: Original strand, 50063918 - 50064012
Alignment:
Q  127 tgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgc 221  Q
    ||||| |||||||||||||||| |||||||||  |||| | ||| || ||| |||| ||||| ||  ||||||||| |||| |||||||||||||    
T  50063918 tgtagccaggatcgagtgctggctcgtaggatcttacgattctacgtgccacggcacctcaaccgagcttcgacttcactccggttcgtttttgc 50064012  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 43061133 - 43061169
Alignment:
Q  126 ttgtagtcaggatcgagtgctggttcgtaggattgta 162  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  43061133 ttgtagtcagggtcgagtgctggtacgtaggattgta 43061169  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 10601772 - 10601679
Alignment:
Q  126 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgttttt 219  Q
    ||||||||| | ||||||| | |||||||||||  |||  ||||| |||||||| || ||||||| |  |||||||||||||| ||||||||||    
T  10601772 ttgtagtcaagttcgagtgtttgttcgtaggatcttacaatcctacgtcccatgacacctcaatcatgtttcgactttactcatgttcgttttt 10601679  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 220
Target Start/End: Original strand, 55911185 - 55911279
Alignment:
Q  126 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgacttt-actcaggttcgtttttg 220  Q
    ||||||||| |||||||||||||||||||||||  |||| |||||  | ||| |||| ||||||||| ||| |||||| | ||| |||||||||||    
T  55911185 ttgtagtcaagatcgagtgctggttcgtaggatcatacgatcctacat-ccacggcacctcaatcgtgctttgactttaagtcaagttcgtttttg 55911279  T

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