View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_low_5 (Length: 573)
Name: NF6277_low_5
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 7 - 555
Target Start/End: Complemental strand, 12508901 - 12508349
Alignment:
| Q |
7 |
tccaagaatataaactccacttccaaaacaacactcaaatccaaa---accaannnnnnnagctaatctaagcnnnnnnnnn-ttatgtctggaactgaa |
102 |
Q |
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| T |
12508901 |
tccaataatataaactccacttccaaaacaacactcaaatccaaactcaacaatttttttagccaatctaagcaaaaaaaaaattatgtctggaactgaa |
12508802 |
T |
|
| Q |
103 |
gctacaaaatatgcttctgctacaaacaacataaccaaatcnnnnnnnccaaacatgagaagattcattggtgtgagacaaaggccatcaggtagatggg |
202 |
Q |
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| T |
12508801 |
gctacaaaatatgcttctgctacaaacaacataaccaaatcaaaaaaaccgaacatgagaagattcattggtgtgagacaaaggccatcaggtagatggg |
12508702 |
T |
|
| Q |
203 |
tagctgagatcaaagactcatctcaacatgtaagattatggcttggaacctatgacacaccagaagaagctgctcgagcttacgacgaagctgctcgagc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12508701 |
tagctgagatcaaagactcatctcaacatgtaagattatggcttggaacctatgacacaccagaagaagctgctcgagcttacgacgaagctgctcgagc |
12508602 |
T |
|
| Q |
303 |
tttacgcggagaaaatgctcgaaccaacttcgccctagcagtatcaacagacggtacaacaccatgcagtgatgatcaaggattagtatcatcaccacaa |
402 |
Q |
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| T |
12508601 |
tttacgcggagaaaatgctcgaaccaacttcgccctagcagtatcaacagacggtacaacaccatgcagtgatgatcaaggattagtatcatcaccacaa |
12508502 |
T |
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| Q |
403 |
acaaatgaagcaaaaaacagtttaacttttgcttcattgaaagcaaaattgagcaagaatcttcaaagtattatggcaagaacaagtgatcatcataaca |
502 |
Q |
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| T |
12508501 |
acaaatgaagcaaaaaacagtttaacttttgcttcattgaaagcaaaattgagcaagaatcttcaaagtattatggcaagaacaagtgatcataataaca |
12508402 |
T |
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| Q |
503 |
acaagttttcaaagagtagagtgagtgatcattttacttttgctagcatattc |
555 |
Q |
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| T |
12508401 |
acaagttttcaaagagtagagtgagtgatcattttacttttgctagcatattc |
12508349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 170 - 296
Target Start/End: Complemental strand, 33274393 - 33274267
Alignment:
| Q |
170 |
ttggtgtgagacaaaggccatcaggtagatgggtagctgagatcaaagactcatctcaacatgtaagattatggcttggaacctatgacacaccagaaga |
269 |
Q |
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||||||| || |||||||||||||| |||||||||||||||||||||||| || |||| | ||||| | ||||||||||| | ||| ||| | || || |
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| T |
33274393 |
ttggtgttaggcaaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagctgagga |
33274294 |
T |
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| Q |
270 |
agctgctcgagcttacgacgaagctgc |
296 |
Q |
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||| ||| ||||||| || |||||||| |
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| T |
33274293 |
agcagctagagcttatgatgaagctgc |
33274267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 3160220 - 3160268
Alignment:
| Q |
170 |
ttggtgtgagacaaaggccatcaggtagatgggtagctgagatcaaaga |
218 |
Q |
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| T |
3160220 |
ttggtgtgagacaaaggccatcaggaagatgggtagctgagataaaaga |
3160268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 46024054 - 46024103
Alignment:
| Q |
175 |
gtgagacaaaggccatcaggtagatgggtagctgagatcaaagactcatc |
224 |
Q |
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| T |
46024054 |
gtgaggcaaaggccatcaggaagatggatagctgagatcaaagactcatc |
46024103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 46265313 - 46265264
Alignment:
| Q |
175 |
gtgagacaaaggccatcaggtagatgggtagctgagatcaaagactcatc |
224 |
Q |
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||||| |||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
46265313 |
gtgaggcaaaggccatcaggaagatggatagctgagatcaaagactcatc |
46265264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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