View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_low_50 (Length: 286)
Name: NF6277_low_50
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_50 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 286
Target Start/End: Complemental strand, 39185144 - 39184863
Alignment:
| Q |
10 |
catcatcatttgaatatatgctacttagtggtaaagaaacgtaggacttggtaacaatattggatgaacattataattgtttgggatcaggagtccaaaa |
109 |
Q |
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| T |
39185144 |
catcatcatttgaatatatgctacttagtggtaaagaaacgtaggacttggtaacaatattggatgaacattataattgtttgggatcaggagtccaaaa |
39185045 |
T |
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| Q |
110 |
gcgcgatctacattaataggccgagtaacatattacaagagcaaatctggtcc-----cttgaccccaaaacttgataatgaacttatcctatctcgatc |
204 |
Q |
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| T |
39185044 |
gcgcgatctacattaatagggcaagtaacatattacaagagtaaatttggtaccataacttgaccccaaaacttgataatgaacttatcctatctcgatc |
39184945 |
T |
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| Q |
205 |
ctaattcactcacatttggatttctgaaattacttccctcaagcaaatagttcatgttaatgaaaagaaccgttgtacaact |
286 |
Q |
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| T |
39184944 |
ctaattcactcacatttggatttctgaaattacttccctcaagcaaatagttcatgttaatgaaaagaaccgttgtacaact |
39184863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 70 - 208
Target Start/End: Complemental strand, 39179011 - 39178868
Alignment:
| Q |
70 |
tggatgaacattataattgtttgggatcaggagtccaaaagcgcgatctacattaataggccgagtaacatattacaagagcaaatctg-----gtccct |
164 |
Q |
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| T |
39179011 |
tggacgaacattataattgtttgggatcaggagtctaaaagcacggtctacattaatagggaaagtaacatattacaagagcaaatttgacaccataact |
39178912 |
T |
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| Q |
165 |
tgaccccaaaacttgataatgaacttatcctatctcgatcctaa |
208 |
Q |
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| T |
39178911 |
tgaccccaaaacttgacaatgaacttatcctatctcgatcctaa |
39178868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 39179050 - 39179011
Alignment:
| Q |
12 |
tcatcatttgaatatatgctacttagtggtaaagaaacgt |
51 |
Q |
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| T |
39179050 |
tcatcatttgaatatatgctacttagtggtaaagaaacgt |
39179011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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