View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_low_55 (Length: 277)
Name: NF6277_low_55
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 42535682 - 42535944
Alignment:
| Q |
1 |
aaaaaccaaacaaattttgtatggaactttcgtggagaactggttacatcattggaggatcacttgttacgtcatccactatggcatccagacttcaaaa |
100 |
Q |
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| T |
42535682 |
aaaaaccaaacaaattttgtatggaactttcatggagaactggttacatcattggaggatcacttgttacggcatccactatggcatccagacttcaaaa |
42535781 |
T |
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| Q |
101 |
acaacaattacataacaagtgatcagaacctgatcatttcttactgcagggatgactctgaagatcaatcgatggttaccaatgtgataggttccatcaa |
200 |
Q |
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| T |
42535782 |
acaacaattacataacaagtgatcagaacctgatcatttcttactgcagggatgactctgaagatcaatcgatggttaccaatgtgataggttccatcaa |
42535881 |
T |
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| Q |
201 |
tgtgagcaacatcttatcggggaaatgtgtggcgaaaattaatgctacaaaagctttggagtg |
263 |
Q |
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| T |
42535882 |
tgtgagcaacatcttatcggggaaatgtgtggcgaaaattaatgctacaaaagctttggagtg |
42535944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 3 - 263
Target Start/End: Original strand, 42529965 - 42530228
Alignment:
| Q |
3 |
aaaccaaacaaattttgtatggaactttcgtggagaactggttacatcattggaggatcacttgttacgtcatccactatggcatccagacttcaa---a |
99 |
Q |
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| T |
42529965 |
aaaccgaacaatttctgtatggaactttcgtggagaactggttacatcattggaggatcacttgttacgacatccactatggcatgcacacttcaactta |
42530064 |
T |
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| Q |
100 |
aacaacaattacataacaagtgatcagaacctgatcatttcttactgcagggatgactctgaagatcaatcgatggttaccaatgtgataggttccatca |
199 |
Q |
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| T |
42530065 |
aaccacaattacataacaagtgatcagaacctgatcatttcttactgcagggatgactctgaagatcaatcgaaggaaaccaatgcggtaggttccatca |
42530164 |
T |
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| Q |
200 |
atgtgagcaacatcttatcggggaaatgtgtggcgaaaattaatgctacaaaagctttggagtg |
263 |
Q |
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| T |
42530165 |
atgtgagcagcatcttgtcggggaaatgtgtggcgaaaattaatgctgcaaaagctttggagtg |
42530228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 27826012 - 27826073
Alignment:
| Q |
190 |
ggttccatcaatgtgagcaacatcttatcggggaaatgtgtggcgaaaattaatgctacaaa |
251 |
Q |
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| T |
27826012 |
ggttccatcaatgtgagcaacatcttgacagggaaatgtgtggcgaaaattaatgctgcaaa |
27826073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 175
Target Start/End: Original strand, 27825719 - 27825863
Alignment:
| Q |
22 |
tggaactttcgtggagaactggttacatcattggaggatcacttgttacgtcatccactatggcatccagacttcaa---aaacaacaattacataacaa |
118 |
Q |
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| T |
27825719 |
tggaactttcgtggcgaacttgtcacatcatttgaggatcacttgtta------------tggcatccagactgcaacacaaacaacatatacataacaa |
27825806 |
T |
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| Q |
119 |
gtgatcagaacctgatcatttcttactgcagggatgactctgaagatcaatcgatgg |
175 |
Q |
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| T |
27825807 |
gtgatcaggacctgattatatcgtactgcaaagctgaatctgaagatcaatggatgg |
27825863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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