View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_low_56 (Length: 277)
Name: NF6277_low_56
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 49537990 - 49538250
Alignment:
| Q |
1 |
agattaatataggagcattcttagacgcaactaatttaaaattttcaactacttgaaaatttgtcnnnnnnnctactttaaaagaatagttcaacattaa |
100 |
Q |
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| T |
49537990 |
agattaatataggagcattcttagacgcaactaatttaaaattttcaactactttaaaatttgtcaaaaaaactactttaaaagaatagttcaacattaa |
49538089 |
T |
|
| Q |
101 |
atgattagatatttaatattggatatcatacacaacaaaatattaagtatcaggttcaccannnnnnnnaaggnnnnnnnnnnnnnnnnntggtaaattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||| |
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| T |
49538090 |
atgattagatatttaatattggatatcatacacaacaaaatattaagtattaggttcaccattttttttaaggaaaaaataaataaaaaatggtaaattt |
49538189 |
T |
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| Q |
201 |
cgatgtttaatattttgttcttgtctaaagatatgttaggccataatttaaacgtggtcct |
261 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49538190 |
cgatgcttaatattttgttcttgtctaaagatatgttaggccataatttaaacgtggtcct |
49538250 |
T |
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