View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6277_low_57 (Length: 271)

Name: NF6277_low_57
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6277_low_57
NF6277_low_57
[»] chr4 (3 HSPs)
chr4 (21-256)||(43431000-43431235)
chr4 (38-256)||(51208585-51208804)
chr4 (201-246)||(42059600-42059645)
[»] chr2 (2 HSPs)
chr2 (20-256)||(6254970-6255206)
chr2 (193-250)||(12331976-12332034)
[»] chr1 (4 HSPs)
chr1 (191-250)||(49359696-49359755)
chr1 (193-250)||(4433984-4434042)
chr1 (193-250)||(25665779-25665837)
chr1 (191-243)||(49361909-49361961)
[»] chr3 (3 HSPs)
chr3 (203-253)||(16370-16420)
chr3 (205-246)||(17131-17172)
chr3 (177-250)||(40934748-40934821)
[»] chr5 (1 HSPs)
chr5 (204-249)||(17111702-17111747)
[»] chr8 (2 HSPs)
chr8 (203-251)||(37812062-37812110)
chr8 (189-246)||(37811230-37811287)
[»] scaffold0159 (1 HSPs)
scaffold0159 (203-250)||(28211-28258)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 21 - 256
Target Start/End: Original strand, 43431000 - 43431235
Alignment:
Q  21 tgtcgagatatcgtcggaattgagaagtggttgtggagatatcaccggaatgaccgttttcggagtagaacaatgactaaagaaagaatggtgctgaaac 120  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43431000 tgtcgagatatcgtcggaattgagaagtggttgtggagatatcgtcggaatgaccgtttttggagtagaacaatgactaaagaaagaatggtgctgaaac 43431099  T
Q  121 ggtgaagaaaggagaactttcagaaatcgcgtgaggtgaaagaaagcaacgcgcgtgaaattgatgaaaagagagtcacgtgactcattaaacctctctt 220  Q
    | ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43431100 gatgaagaaaggagaactttcagaaatcgcgtgaggtgagagaaatcaacgcgcgtgaaattgatgaaaagagagtcatgtgactcattaaacctctctt 43431199  T
Q  221 ttaatcacaaccatctaactaatccaatggtcacag 256  Q
    ||||||||||||||||||||||||||||||||||||    
T  43431200 ttaatcacaaccatctaactaatccaatggtcacag 43431235  T

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Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 38 - 256
Target Start/End: Original strand, 51208585 - 51208804
Alignment:
Q  38 aattgagaagtggttgtggagatatcaccggaatgaccgttttcggagtagaacaatgactaaagaaagaatggtgctgaaacggtgaagaaaggagaac 137  Q
    ||||||||||||||||| |||||||| ||  |||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  51208585 aattgagaagtggttgtcgagatatcgccaaaatgactgtttttggagtagaacaatgactaaagaaagaatggtgctgaaacgatgaagaaaggagaat 51208684  T
Q  138 tttcagaaatcgcgtgaggtgaaagaaagcaacgcgc-gtgaaattgatgaaaagagagtcacgtgactcattaaacctctcttttaatcacaaccatct 236  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  51208685 tttcagaaatcgcgtgaggtgagagaaagcaacgcgcggtgaaattgatgaaaagagagtcatgtgactcattaaacctctcttttaattacaaccatct 51208784  T
Q  237 aactaatccaatggtcacag 256  Q
    ||||||||||||| ||||||    
T  51208785 aactaatccaatgatcacag 51208804  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 42059645 - 42059600
Alignment:
Q  201 tgactcattaaacctctcttttaatcacaaccatctaactaatcca 246  Q
    ||||||||||||| |||||||||||||||  ||||||| |||||||    
T  42059645 tgactcattaaacttctcttttaatcacattcatctaattaatcca 42059600  T

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Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 6255206 - 6254970
Alignment:
Q  20 ttgtcgagatatcgtcggaattgagaagtggttgtggagatatcaccggaatgaccgttttcggagtagaacaatgactaaagaaagaatggtgctgaaa 119  Q
    |||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6255206 ttgtcgagatatcgtcggaactaagaagtggttgtggagatatcgccggaatgaccgttttcggagtagaacaatgactaaagaaagaatggtgctgaaa 6255107  T
Q  120 cggtgaagaaaggagaactttcagaaatcgcgtgaggtgaaagaaagcaacgcgcgtgaaattgatgaaaagagagtcacgtgactcattaaacctctct 219  Q
    || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  6255106 cgatgaagaaaggagaattttcagaaatcgcgtgaggtgaaagaaagcaacgcgcgtgaaattgatgaaaagagagtcatgtgactcattaaacctctat 6255007  T
Q  220 tttaatcacaaccatctaactaatccaatggtcacag 256  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  6255006 tttaatcacaaccatcttactaattcaatggtcacag 6254970  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 12331976 - 12332034
Alignment:
Q  193 gagtcacgtgactcattaaacc-tctcttttaatcacaaccatctaactaatccaatgg 250  Q
    ||||||||||| |||||||||| | ||||||||||||| |||||||| |||||||||||    
T  12331976 gagtcacgtgagtcattaaaccatttcttttaatcacagccatctaattaatccaatgg 12332034  T

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Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 49359755 - 49359696
Alignment:
Q  191 gagagtcacgtgactcattaaacctctcttttaatcacaaccatctaactaatccaatgg 250  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  49359755 gagagtcacgtgactcattaaacctcccttttaatcacagccatctaactaatccaatgg 49359696  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 4434042 - 4433984
Alignment:
Q  193 gagtcacgtgactcattaaacc-tctcttttaatcacaaccatctaactaatccaatgg 250  Q
    ||||||||||| |||||||||| | ||||||||||||| |||||||| |||||||||||    
T  4434042 gagtcacgtgagtcattaaaccatttcttttaatcacagccatctaattaatccaatgg 4433984  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 25665837 - 25665779
Alignment:
Q  193 gagtcacgtgactcattaaacc-tctcttttaatcacaaccatctaactaatccaatgg 250  Q
    ||||||||||| |||||||||| | ||||||||||||| |||||||| |||||||||||    
T  25665837 gagtcacgtgagtcattaaaccatttcttttaatcacagccatctaattaatccaatgg 25665779  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 49361909 - 49361961
Alignment:
Q  191 gagagtcacgtgactcattaaacctctcttttaatcacaaccatctaactaat 243  Q
    ||||||||| ||| ||||| ||| || |||||||||||| |||||||||||||    
T  49361909 gagagtcacctgattcattgaacttcccttttaatcacagccatctaactaat 49361961  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 16420 - 16370
Alignment:
Q  203 actcattaaacctctcttttaatcacaaccatctaactaatccaatggtca 253  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  16420 actcattaaacttctcttttaatcacagccatctaactaatccaatggtca 16370  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 17131 - 17172
Alignment:
Q  205 tcattaaacctctcttttaatcacaaccatctaactaatcca 246  Q
    ||||||||| ||||||||||||||| ||||||||||||||||    
T  17131 tcattaaacttctcttttaatcacagccatctaactaatcca 17172  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 40934748 - 40934821
Alignment:
Q  177 gaaattgatgaaaagagagtcacgtgactcattaaacctctcttttaatcacaaccatctaactaatccaatgg 250  Q
    |||||||  ||||||||||||||||||||||||||||  |  ||||||||||| |||| || | ||||||||||    
T  40934748 gaaattggagaaaagagagtcacgtgactcattaaactgcatttttaatcacagccatgtatccaatccaatgg 40934821  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 17111702 - 17111747
Alignment:
Q  204 ctcattaaacctctcttttaatcacaaccatctaactaatccaatg 249  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||    
T  17111702 ctcattaaacttctcttttaatcacaatcatctaactaatccaatg 17111747  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 37812062 - 37812110
Alignment:
Q  203 actcattaaacctctcttttaatcacaaccatctaactaatccaatggt 251  Q
    ||||||||||| ||||||||||||||| |||||||||||||||| ||||    
T  37812062 actcattaaacttctcttttaatcacagccatctaactaatccattggt 37812110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 37811287 - 37811230
Alignment:
Q  189 aagagagtcacgtgactcattaaacctctcttttaatcacaaccatctaactaatcca 246  Q
    ||||||||||  ||||||||||||| ||||||||||||| |  ||||||| |||||||    
T  37811287 aagagagtcatatgactcattaaacttctcttttaatcatagacatctaattaatcca 37811230  T

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Target: scaffold0159 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 28258 - 28211
Alignment:
Q  203 actcattaaacctctcttttaatcacaaccatctaactaatccaatgg 250  Q
    ||||||||||| ||||||||||||||| |||||||||||||| |||||    
T  28258 actcattaaacatctcttttaatcacagccatctaactaatctaatgg 28211  T

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