View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6277_low_58 (Length: 269)
Name: NF6277_low_58
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_58 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 124; Significance: 7e-64; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 69 - 200
Target Start/End: Original strand, 8892624 - 8892755
Alignment:
| Q |
69 |
ttcaaaatattaactaatgcaattgtaatattttcatttgtatccatttcacccttcaatgaaatatatcttaattttgttaattaatcttttagaaaat |
168 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8892624 |
ttcaaaatattatctaatgcaattgtaatattttcatttgtatccatttcacccttcaatgaaatatatcttaatttagttaattaatcttttagaaaat |
8892723 |
T |
|
| Q |
169 |
atccatcattacaaacttttctaacatgctaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
8892724 |
atccatcattacaaacttttctaacatgctaa |
8892755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 8891667 - 8891739
Alignment:
| Q |
1 |
tttgccataacgtagattgtgtcgtcaactaccgttggagtactgttttgttggttacgttgcaccacttcaa |
73 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8891667 |
tttgccataacgtagattgtgtcgtcaactgccgttggagtactgttttgctggttacgttgcaccacttcaa |
8891739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 200
Target Start/End: Original strand, 8892864 - 8892940
Alignment:
| Q |
124 |
tcaatgaaatatatcttaattttgttaattaatcttttagaaaatatccatcattacaaacttttctaacatgctaa |
200 |
Q |
| |
|
|||||||||||||| ||| ||| |||||||||||||||||||||||| ||| |||| ||| ||||||||||||||| |
|
|
| T |
8892864 |
tcaatgaaatatattttactttagttaattaatcttttagaaaatattcataattaaaaaaatttctaacatgctaa |
8892940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University