View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_low_6 (Length: 570)
Name: NF6277_low_6
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 286 - 558
Target Start/End: Complemental strand, 8402993 - 8402721
Alignment:
| Q |
286 |
agttgctttcccatttaacatatgtttccaaacctatatatacatgcatgaatttacattttgagtttttagtatgaatgattcattggtactatttcac |
385 |
Q |
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| T |
8402993 |
agttgctttcccatttaacatatgtttccaaacctatatatacatgcatgaatttacattttgagtttttagtatgaatgattcattggtactatttcac |
8402894 |
T |
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| Q |
386 |
annnnnnnatgcttttcttcttagttggggctaggggtgagaataaaatgtaatttgtataacattgtaagttttgcagctttatgctccggaaagaatt |
485 |
Q |
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| T |
8402893 |
atttttttatgcttttcttcttagttggggctaggggtgagaataaaatgtaatttgtataacattgtaagttttgcagctttatgctccagaaagaatt |
8402794 |
T |
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| Q |
486 |
gattctattactcttcccttggaccttggtatttgttggtcatgaacgcttcgcatatatctctatgtatttt |
558 |
Q |
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| T |
8402793 |
gattctattactcttcccttggaccttggtatttgttggtcatgaacgcttcgcatatatctctatgtatttt |
8402721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 8403244 - 8403006
Alignment:
| Q |
18 |
catatcgtatatattgttaatcactacgtatggtttacctaaaattgcacctatttgtggattactagaagaagatggagattttgtggttttgggagat |
117 |
Q |
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| T |
8403244 |
catatcgtatatattgttaatcactacgtatggtttacctaaaattgcacctatttgtggattactagaagaagatggagattttgtggttttgggagat |
8403145 |
T |
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| Q |
118 |
ggatcaaaacttgtttgattgtagccatagccagagctatgcctgggagaggactccgaagaggagacaatgggaatgtctcggttagtagtacaacaga |
217 |
Q |
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| T |
8403144 |
ggatcaaaacttggttgattgtagccatagccagagctatgcctgggagaggactccgaagaggagacaatgggaatgtctcggtttgtagtacaacaga |
8403045 |
T |
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| Q |
218 |
aaaacgccttaaacaatcctaatcccattctctaattac |
256 |
Q |
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| T |
8403044 |
aaaacgccttaaacaatcctaatcccattctctaattac |
8403006 |
T |
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