View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_low_65 (Length: 258)
Name: NF6277_low_65
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_65 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 33511688 - 33511938
Alignment:
| Q |
13 |
aatatgaatgattaaaactaaaaattgaaataaatagactacttcatcattgaatttatgtacattgatcgaatttgttaatgaattttttgaaatagct |
112 |
Q |
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| T |
33511688 |
aatatgaatgattaaaactaaaaattgaaataaatagactacttcatcattgaatttatgtacattgatcgaatttgttaatgaattttttgaaatagct |
33511787 |
T |
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| Q |
113 |
aaatagtctctcaatttactcaatgtccatcaaatgcatccctctatcaagtttagacgttaggcacgatgaagtgctttttaaacgttgatgttcgtca |
212 |
Q |
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| T |
33511788 |
aaatagtctctcaatttactcaatgtccatcaaatgcatccctctatcaagtttagacgttaggcacgatgaagtgctttttaaacgttgatgttcgtca |
33511887 |
T |
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| Q |
213 |
ctttcacatttttactgca-----aaacaaattctaatatcaaactaaacc |
258 |
Q |
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| T |
33511888 |
ctttcacatttttactgcaaaattaaacaaattctaatatcaaactaaacc |
33511938 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 129
Target Start/End: Original strand, 1893893 - 1893925
Alignment:
| Q |
97 |
attttttgaaatagctaaatagtctctcaattt |
129 |
Q |
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| T |
1893893 |
attttttgaaatagctaaatagtccctcaattt |
1893925 |
T |
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