View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_low_69 (Length: 255)
Name: NF6277_low_69
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 41556088 - 41555864
Alignment:
| Q |
18 |
gatttgagatttgtttt-gtgccaggttgaacatggttggttgatttatatatgtggctgaattcagaagatttggtgtgtactaatgtatcaaccgtgt |
116 |
Q |
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| T |
41556088 |
gatttgagatttgtttttgtgccaggttgaacatggttggttgatttatatatgtggctaaattcagaagatttggtgtgtactaatgtatcaaccgtgt |
41555989 |
T |
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| Q |
117 |
ccaatcatgtgtccaattcagaagatatggtgtgtcaattatttgtttgtcaatat----tgcaaatgcacaaagcaaaataaatgtggcgtgtggggcc |
212 |
Q |
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| T |
41555988 |
ccaatcatgtgtccaattcagaagatatggtgtgtcaattatttgtttgtcaatatatactgcaaatgcacaaagcaaaataaatgtggcgtgtggggcc |
41555889 |
T |
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| Q |
213 |
gctgagtagaagtgggctaatctct |
237 |
Q |
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| T |
41555888 |
gctgagtagaagtgggctaatctct |
41555864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 41569763 - 41569673
Alignment:
| Q |
31 |
ttttgtgccaggttgaacatggttggttgatttatatatgtggctgaattcagaagatttggtgtgtactaatgtatcaaccgtgtccaat |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41569763 |
ttttgtgccaggttgaacatggttggttgatttatatatgtggctgaattcagaagatttggtgtgtactaatgtatcaaccgtgtccaat |
41569673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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