View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6277_low_71 (Length: 252)

Name: NF6277_low_71
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6277_low_71
NF6277_low_71
[»] chr3 (1 HSPs)
chr3 (15-231)||(8524833-8525049)
[»] chr5 (7 HSPs)
chr5 (15-211)||(42125378-42125574)
chr5 (15-227)||(41711799-41712011)
chr5 (15-222)||(42130603-42130810)
chr5 (26-211)||(42118787-42118973)
chr5 (16-226)||(34230816-34231038)
chr5 (16-226)||(34238871-34239081)
chr5 (84-211)||(41570045-41570172)
[»] chr6 (1 HSPs)
chr6 (16-224)||(25521038-25521246)
[»] chr2 (1 HSPs)
chr2 (15-209)||(12250199-12250393)
[»] chr4 (1 HSPs)
chr4 (15-231)||(11120152-11120368)


Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 8524833 - 8525049
Alignment:
Q  15 gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||    
T  8524833 gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaggtaactatgagacaagtcaagatgtgtgagactcaaaaac 8524932  T
Q  115 ccaccaaactttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattga 214  Q
    ||||||||||||||||||||||||||| || |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8524933 ccaccaaactttgaatgaaaataagagccagagaaatcattgttagcaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattga 8525032  T
Q  215 atataccttgaagacct 231  Q
     ||| ||||||||||||    
T  8525033 gtatgccttgaagacct 8525049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 42125378 - 42125574
Alignment:
Q  15 gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac 114  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||    
T  42125378 gagatgaagtgattgtaatttggaaaggtgtgagatttgaattggaatttcacctttaaagaaactacgagacaagtcaagatgtgcaagactcataaac 42125477  T
Q  115 ccaccaaactttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggat 211  Q
    ||||||||||| |||||||||| ||||| | |||||| ||||||||||||||||||| |||||| || | |||||| ||||||||||||||||||||    
T  42125478 ccaccaaacttagaatgaaaatgagagtaagagaaatcattgttagaaaggttgagtgtttgaagatgaacaagattgaaaagggtactgttaggat 42125574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 41712011 - 41711799
Alignment:
Q  15 gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac 114  Q
    |||||||||||||||||||||| | ||||||||||||||| ||||||||||||||| |||| |||||  ||||| |||||||||||  ||||||||||||    
T  41712011 gagatgaagtgattgtaatttggagaggtgtgagatttgaattggaatttcaccttcaaagtaactataagacatgtcaagatgtgcaagactcaaaaac 41711912  T
Q  115 ccaccaaactttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattga 214  Q
    | ||||||||| ||||||||||  |||| | |||||| ||||| ||||||||||||| |||| | || | ||||||||||||| ||| | ||||||| ||    
T  41711911 cgaccaaacttagaatgaaaatgggagtaagagaaatcattgtaagaaaggttgagtgtttggagatgaacaagatggaaaagagtattattaggatgga 41711812  T
Q  215 atataccttgaag 227  Q
    |||||||||||||    
T  41711811 atataccttgaag 41711799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 42130603 - 42130810
Alignment:
Q  15 gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac 114  Q
    |||||||||||||||||||||| | ||||| |||||||||||||||||||||||||  |||  ||||  |||||||||||||||||| ||||||  |||     
T  42130603 gagatgaagtgattgtaatttggataggtgagagatttgagttggaatttcaccttctaagttactatcagacaagtcaagatgtgtaagactctgaaat 42130702  T
Q  115 ccaccaaactttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattga 214  Q
    |||| ||||||  ||||||||| |||||||||||||| ||||| ||||||||||||| |||| | || | ||||||| ||||||||||| ||||||||||    
T  42130703 ccacaaaacttataatgaaaatgagagtcaaagaaatcattgtaagaaaggttgagtgtttggagatgaacaagatgaaaaagggtactattaggattga 42130802  T
Q  215 atatacct 222  Q
    || |||||    
T  42130803 atgtacct 42130810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 26 - 211
Target Start/End: Original strand, 42118787 - 42118973
Alignment:
Q  26 attgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaa-ctacgagacaagtcaagatgtgtgagactcaaaaacccaccaaact 124  Q
    ||||||||||| | | ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| ||||||||||    
T  42118787 attgtaatttggataagtgtgagatttgagttggaatttcacctttaaagaaaactatgagacaagtcaagatgtgtaagactcaaaaaaccaccaaact 42118886  T
Q  125 ttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggat 211  Q
    | |||||||||  |||  |  |||||| ||||   | |||||| ||| |||| | || | ||||||||||||||||| |||||||||    
T  42118887 tagaatgaaaacgagaagcggagaaattattggatgcaaggtttagtgtttggagatgaacaagatggaaaagggtattgttaggat 42118973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 34231038 - 34230816
Alignment:
Q  16 agatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaacc 115  Q
    ||||||||||||||||||||| ||||||  ||||||||||  ||||||||| ||| |||||||| |  ||||||||| |||||||| ||||||| |||||    
T  34231038 agatgaagtgattgtaatttggaaaggtccgagatttgagaaggaatttcatcttgaaagaaacaagaagacaagtcgagatgtgtaagactcataaacc 34230939  T
Q  116 caccaaactttgaatgaaaat------------aagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtact 203  Q
    | |||||||| ||||||||||            ||  || | ||||||||||||| |||||||||||  ||||||  | |||||||||||||||||||||    
T  34230938 cgccaaacttagaatgaaaatgggagccagagaaatcgttagagaaataattgttcgaaaggttgagcatttgaaggtgagcaagatggaaaagggtact 34230839  T
Q  204 gttaggattgaatataccttgaa 226  Q
     ||||||| || |||||||||||    
T  34230838 attaggatggagtataccttgaa 34230816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 34239081 - 34238871
Alignment:
Q  16 agatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaacc 115  Q
    ||||||||||||||||||||| |||||| |||||||||||  |||||||||||   ||    | ||  |||||||||||||||||| ||||||  |||||    
T  34239081 agatgaagtgattgtaatttggaaaggtatgagatttgagaaggaatttcaccgccaacatgagtattagacaagtcaagatgtgtaagactcgtaaacc 34238982  T
Q  116 caccaaactttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattgaa 215  Q
      |||||||| |||| |||||| ||  || |||||  ||||||||||||||||||| |||| | || | ||| || |||||||||||| ||||||| ||     
T  34238981 tgccaaacttagaatcaaaataggaaccatagaaaccattgttagaaaggttgagtgtttggagatgaacaatattgaaaagggtactattaggatggag 34238882  T
Q  216 tataccttgaa 226  Q
    |||||||||||    
T  34238881 tataccttgaa 34238871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 211
Target Start/End: Complemental strand, 41570172 - 41570045
Alignment:
Q  84 agacaagtcaagatgtgtgagactcaaaaacccaccaaactttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataa 183  Q
    |||||||||||||||||| ||||||  ||| ||||||||||  ||||| ||||  ||||  ||||||| ||||| |||||||||||||  ||| | || |    
T  41570172 agacaagtcaagatgtgtaagactcttaaatccaccaaactgagaatgcaaattggagttgaagaaatcattgtgagaaaggttgagtgattggagatga 41570073  T
Q  184 gcaagatggaaaagggtactgttaggat 211  Q
    |||||||| ||||| ||  |||||||||    
T  41570072 gcaagatgaaaaagagtgttgttaggat 41570045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 25521246 - 25521038
Alignment:
Q  16 agatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaacc 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||||  |||||    
T  25521246 agatgaagtgattgtaatttggaaaggtgtgagatttgagttggaattttacctttaaagaaactaccagacaagtaaagatgtgtaagactctgaaacc 25521147  T
Q  116 caccaaactttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattgaa 215  Q
    |||||||||| | ||||||||  ||| ||  ||||| ||||| ||||||||||||||||||||||| ||||||||||||||| ||||| ||||||| |||    
T  25521146 caccaaacttagcatgaaaatgggagccagtgaaatcattgtaagaaaggttgagtttttgaatatgagcaagatggaaaagagtactattaggatggaa 25521047  T
Q  216 tataccttg 224  Q
    |||||||||    
T  25521046 tataccttg 25521038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 209
Target Start/End: Original strand, 12250199 - 12250393
Alignment:
Q  15 gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac 114  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||| ||| | || ||     
T  12250199 gagatgaagtgattctaatttggaaaggtgtgagatttgagttggaacttcacctttaaagaaactattagacaagtcaagatgtgtaagattaaagaat 12250298  T
Q  115 ccaccaaactttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttagg 209  Q
    ||||||||||| ||||||||||  ||||   |||||| ||||  ||||||||||||| |||| | || |||||||| |||||||||||| |||||    
T  12250299 ccaccaaacttagaatgaaaatgggagtttgagaaatcattggaagaaaggttgagtgtttggagatgagcaagatcgaaaagggtactattagg 12250393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 11120152 - 11120368
Alignment:
Q  15 gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac 114  Q
    ||||| ||| |||||||||||| |||| | |||||||||||||||||||||||| | || |  ||||  |||||||| ||||||||| ||||||  ||||    
T  11120152 gagataaagggattgtaatttggaaagatatgagatttgagttggaatttcaccataaatgttactataagacaagtaaagatgtgtaagactctgaaac 11120251  T
Q  115 ccaccaaactttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattga 214  Q
    ||||||||||| |||||||||  |||| |  |||||| |||||    |||||||||| |||| | || | ||||||||||||||||||| || ||||  |    
T  11120252 ccaccaaacttagaatgaaaacgagagccggagaaattattgtatacaaggttgagtgtttggagatgaacaagatggaaaagggtactattcggatgta 11120351  T
Q  215 atataccttgaagacct 231  Q
    |||| ||||||||||||    
T  11120352 atatgccttgaagacct 11120368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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