View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6277_low_73 (Length: 251)

Name: NF6277_low_73
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6277_low_73
NF6277_low_73
[»] chr7 (8 HSPs)
chr7 (1-243)||(25324602-25324853)
chr7 (1-68)||(19987114-19987182)
chr7 (10-107)||(5513957-5514054)
chr7 (1-68)||(4958193-4958261)
chr7 (11-83)||(38223915-38223988)
chr7 (11-69)||(21122093-21122150)
chr7 (1-68)||(19594004-19594072)
chr7 (10-73)||(19753071-19753135)
[»] chr5 (4 HSPs)
chr5 (14-101)||(19950390-19950476)
chr5 (10-104)||(15468232-15468327)
chr5 (13-93)||(12593055-12593136)
chr5 (54-103)||(13420840-13420889)
[»] chr3 (3 HSPs)
chr3 (1-83)||(46048823-46048906)
chr3 (1-63)||(26085027-26085090)
chr3 (11-71)||(36902434-36902495)
[»] chr2 (9 HSPs)
chr2 (1-122)||(40999579-40999701)
chr2 (1-101)||(41068891-41068990)
chr2 (14-68)||(36266935-36266990)
chr2 (10-82)||(28857017-28857089)
chr2 (11-122)||(11921845-11921957)
chr2 (1-83)||(16118013-16118097)
chr2 (10-107)||(7868391-7868488)
chr2 (6-68)||(16341891-16341955)
chr2 (42-102)||(26312394-26312454)
[»] chr1 (5 HSPs)
chr1 (10-110)||(11570027-11570123)
chr1 (14-82)||(27544313-27544382)
chr1 (1-81)||(49003465-49003545)
chr1 (10-52)||(51504644-51504686)
chr1 (15-107)||(47364248-47364340)
[»] scaffold0712 (1 HSPs)
scaffold0712 (1-65)||(6161-6224)
[»] scaffold0709 (1 HSPs)
scaffold0709 (1-65)||(6179-6242)
[»] chr8 (8 HSPs)
chr8 (10-68)||(28557201-28557260)
chr8 (11-103)||(12733964-12734056)
chr8 (11-122)||(4797345-4797455)
chr8 (11-83)||(38937733-38937805)
chr8 (12-83)||(8673711-8673783)
chr8 (1-68)||(28562264-28562332)
chr8 (1-68)||(28567762-28567830)
chr8 (1-68)||(28575355-28575423)
[»] chr6 (1 HSPs)
chr6 (11-82)||(3705831-3705901)
[»] chr4 (4 HSPs)
chr4 (1-68)||(10180714-10180782)
chr4 (42-122)||(11346881-11346961)
chr4 (10-122)||(26698910-26699020)
chr4 (10-83)||(2574159-2574233)


Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 25324602 - 25324853
Alignment:
Q  1 attatataacaattttttaatattaaaaagtgtggatctcacttaagattggtggtcttaagtgagactccaagtcttataagtctccgaaaaagtttct 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||   ||| ||||| ||||||||||||||||    
T  25324602 attatataacaattttttaatattaaaaagtgtgggtctcacttaagattggtggtcttaagtgagacccctgatctcataagactccgaaaaagtttct 25324701  T
Q  101 cctcaataaagatacctaatagctataaaaagtcttcaaaatttaagacccttccattaaagataatctaata---------tgcaaaatatatgttaca 191  Q
    ||||||||||| ||| ||||||||| |||||||||||||| ||||| | ||||||||| ||||||||||||||         | ||||||||||||||||    
T  25324702 cctcaataaaggtacttaatagctacaaaaagtcttcaaagtttaaaatccttccattgaagataatctaatataccaggcttccaaaatatatgttaca 25324801  T
Q  192 ataattaatcagcaacagaaccaaaagactaatacagttaaatagaataatc 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25324802 ataattaatcagcaacagaaccaaaagactaatacagttaaatagaataatc 25324853  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 19987182 - 19987114
Alignment:
Q  1 attatataacaattttttaatattaaaaag-tgtggatctcacttaagattggtggtcttaagtgagac 68  Q
    |||| ||||||||||||||||||||||||| ||||| |||||||||||||||  |||||||||||||||    
T  19987182 attacataacaattttttaatattaaaaagttgtgggtctcacttaagattgagggtcttaagtgagac 19987114  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 5513957 - 5514054
Alignment:
Q  10 caattttttaatattaaaa-agtgtggatctcacttaagattggtggtcttaagtgagactccaagtcttataagtctccgaaaaagtttctcctcaat 107  Q
    ||||||||| ||||||||| ||||||  |||| ||||||||||| ||||||||||||||  || |||||||||||  || |||||| ||||||||||||    
T  5513957 caatttttttatattaaaagagtgtgtgtctcgcttaagattgg-ggtcttaagtgagatcccgagtcttataagattctgaaaaaatttctcctcaat 5514054  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 4958261 - 4958193
Alignment:
Q  1 attatataacaattttttaatattaaaaag-tgtggatctcacttaagattggtggtcttaagtgagac 68  Q
    |||| ||| ||||||||||||||||||||| |||||||| |||||||||| |  |||||||||||||||    
T  4958261 attacatatcaattttttaatattaaaaaggtgtggatcccacttaagatggagggtcttaagtgagac 4958193  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 38223988 - 38223915
Alignment:
Q  11 aattttttaatattaaaaag-tgtggatctcacttaagattggtggtcttaagtgagactccaagtcttataag 83  Q
    |||||||||||||||||||| ||||| || ||||||||||||   ||||||||||||||||   ||||||||||    
T  38223988 aattttttaatattaaaaaggtgtgggtcccacttaagattgagagtcttaagtgagactctgggtcttataag 38223915  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 21122093 - 21122150
Alignment:
Q  11 aattttttaatattaaaaagtgtggatctcacttaagattggtggtcttaagtgagact 69  Q
    |||||||||||||||||||||||| || |||||||| | ||| ||| ||||||||||||    
T  21122093 aattttttaatattaaaaagtgtgaatatcacttaatactgg-ggttttaagtgagact 21122150  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 19594072 - 19594004
Alignment:
Q  1 attatataacaattttttaatattaaaaag-tgtggatctcacttaagattggtggtcttaagtgagac 68  Q
    |||||||  |||||||||||| |||||||| ||||| |||||||||||||||   ||||||||| ||||    
T  19594072 attatatttcaattttttaatcttaaaaaggtgtgggtctcacttaagattgagagtcttaagttagac 19594004  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 19753071 - 19753135
Alignment:
Q  10 caattttttaatattaaaaag-tgtggatctcacttaagattggtggtcttaagtgagactccaa 73  Q
    |||||||||||| |||||||| ||||| |||||||||||||||   ||||||||| |||| ||||    
T  19753071 caattttttaatcttaaaaaggtgtgggtctcacttaagattgagagtcttaagttagaccccaa 19753135  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 19950476 - 19950390
Alignment:
Q  14 tttttaatattaaaaagtgtggatctcacttaagattggtggtcttaagtgagactccaagtcttataagtctccgaaaaagtttctc 101  Q
    |||||||| | ||||| |||||||| |||||||||| || ||||||||||||||| |||| ||||||| | | |||||||||||||||    
T  19950476 tttttaatttaaaaaaatgtggatcccacttaagatcggaggtcttaagtgagac-ccaaatcttatatgaccccgaaaaagtttctc 19950390  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 15468232 - 15468327
Alignment:
Q  10 caattttttaatattaaaa-agtgtggatctcacttaagattggtggtcttaagtgagactccaagtcttataagtctccgaaaaagtttctcctc 104  Q
    ||||||||||||||||||| ||||||| |  | ||||||||||  | | ||||||||||| ||  |||||||||| |  |||||||||||||||||    
T  15468232 caattttttaatattaaaagagtgtgggtaccgcttaagattgacgcttttaagtgagacaccgggtcttataagaccgcgaaaaagtttctcctc 15468327  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 12593136 - 12593055
Alignment:
Q  13 ttttttaatattaaaa-agtgtggatctcacttaagattggtggtcttaagtgagactccaagtcttataagtctccgaaaa 93  Q
    |||||||||||||||| ||||||| | |  ||||| ||||| ||||||||||||||| ||  |||||||||| | |||||||    
T  12593136 ttttttaatattaaaagagtgtgggttttgcttaaaattgggggtcttaagtgagacaccgggtcttataagaccccgaaaa 12593055  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 13420840 - 13420889
Alignment:
Q  54 ggtcttaagtgagactccaagtcttataagtctccgaaaaagtttctcct 103  Q
    |||||||||| |||||||||||||||||||  || ||||||| |||||||    
T  13420840 ggtcttaagtaagactccaagtcttataagattctgaaaaagattctcct 13420889  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 46048906 - 46048823
Alignment:
Q  1 attatataacaattttttaatattaaaaag-tgtggatctcacttaagattggtggtcttaagtgagactccaagtcttataag 83  Q
    |||| |||||||||||||||||||| |||| | ||| || ||||||||||||  ||||||||||||||| || |||||||||||    
T  46048906 attacataacaattttttaatattacaaaggtttgggtcccacttaagattgagggtcttaagtgagaccccgagtcttataag 46048823  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 26085090 - 26085027
Alignment:
Q  1 attatataacaattttttaatattaaaaag-tgtggatctcacttaagattggtggtcttaagt 63  Q
    |||||||  ||||||||||||||||||||  |||||||| ||||||||||||| | ||||||||    
T  26085090 attatatttcaattttttaatattaaaaaaatgtggatcccacttaagattggagatcttaagt 26085027  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 36902434 - 36902495
Alignment:
Q  11 aattttttaatattaaaaag-tgtggatctcacttaagattggtggtcttaagtgagactcc 71  Q
    |||||||||||||||||| | | |||||||||||||| ||| | |||||||||| |||||||    
T  36902434 aattttttaatattaaaacggtttggatctcacttaaaatttgaggtcttaagtaagactcc 36902495  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 40999701 - 40999579
Alignment:
Q  1 attatataacaattttttaatattaaa-aagtgtggatctcacttaagattggtggtcttaagtgagactccaagtcttataagtctccgaaaaagtttc 99  Q
    |||||||  |||| ||||||||||||| |||||||| || ||||||||||||  ||||||||||||||| | || | ||||||| | | |||||||||||    
T  40999701 attatatttcaatcttttaatattaaacaagtgtgggtcccacttaagattgagggtcttaagtgagaccctaaattttataagaccctgaaaaagtttc 40999602  T
Q  100 tcctcaataaagatacctaatag 122  Q
    | | |||| ||| |||| |||||    
T  40999601 ttcccaatgaaggtaccaaatag 40999579  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 41068891 - 41068990
Alignment:
Q  1 attatataacaattttttaatattaaaaagtgtggatctcacttaagattggtggtcttaagtgagactccaagtcttataagtctccgaaaaagtttct 100  Q
    |||||||  |||||||||| ||| ||||||||||| || ||||||| ||||   |||||||||||||| |  ||||||||||| |||| |||||||||||    
T  41068891 attatatttcaatttttta-tataaaaaagtgtgggtcccacttaaaattgagagtcttaagtgagaccctgagtcttataagactccaaaaaagtttct 41068989  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 36266990 - 36266935
Alignment:
Q  14 tttttaatattaaaa-agtgtggatctcacttaagattggtggtcttaagtgagac 68  Q
    ||||||||||||||| ||||||| |||||||||||||||| |||| ||||||||||    
T  36266990 tttttaatattaaaatagtgtgggtctcacttaagattgggggtcctaagtgagac 36266935  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 28857089 - 28857017
Alignment:
Q  10 caattttttaatattaaaaa-gtgtggatctcacttaagattggtggtcttaagtgagactccaagtcttataa 82  Q
    |||||||||||||||||||| |||||| |||||||||||| ||  | | ||||||||||| |||||||||||||    
T  28857089 caattttttaatattaaaaaagtgtgggtctcacttaagaatgc-gatgttaagtgagaccccaagtcttataa 28857017  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 11921957 - 11921845
Alignment:
Q  11 aattttttaatattaaaaa-gtgtggatctcacttaagattggtggtcttaagtgagactccaagtcttataagtctccgaaaaagtttctcctcaataa 109  Q
    ||||||||||||||||||  |||||  || | ||||||||||| |||||||||| |||| ||  |||||||||| | |  ||||||||||||| ||||      
T  11921957 aattttttaatattaaaagtgtgtgagtcccgcttaagattgggggtcttaagtaagaccccgggtcttataagaccctaaaaaagtttctccccaatgg 11921858  T
Q  110 agatacctaatag 122  Q
    || ||||||||||    
T  11921857 aggtacctaatag 11921845  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 16118013 - 16118097
Alignment:
Q  1 attatataacaattttttaatattaaaaa-gtgtggatctcacttaaga-ttggtggtcttaagtgagactccaagtcttataag 83  Q
    |||||||||| |||||||||||||||||| ||| |  || ||||||||| |||| ||||||||||||||| | | ||||||||||    
T  16118013 attatataaccattttttaatattaaaaaggtgcgagtcccacttaagatttgggggtcttaagtgagacactaggtcttataag 16118097  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 7868391 - 7868488
Alignment:
Q  10 caattttttaatattaaaa-agtgtggatctcacttaagattggtggtcttaagtgagactccaagtcttataagtctccgaaaaagtttctcctcaat 107  Q
    ||||||||||| ||||||  |||||||||  |||||||||| || |||| ||||||||| |||||||||| |||| |  | ||||||||||||| ||||    
T  7868391 caattttttaacattaaatgagtgtggataacacttaagatcgg-ggtcctaagtgagattccaagtcttgtaagacctcaaaaaagtttctccccaat 7868488  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 16341955 - 16341891
Alignment:
Q  6 ataacaattttttaatattaaaaa-gtgtggatctcacttaaga-ttggtggtcttaagtgagac 68  Q
    |||||||||||||||||||||||| ||| |  || ||||||||| |||| |||||||||||||||    
T  16341955 ataacaattttttaatattaaaaaggtgcgagtcccacttaagatttgggggtcttaagtgagac 16341891  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 26312454 - 26312394
Alignment:
Q  42 cttaagattggtggtcttaagtgagactccaagtcttataagtctccgaaaaagtttctcc 102  Q
    ||||||||||| |||||||||| ||||||    ||||||||| ||||| ||||||||||||    
T  26312454 cttaagattgggggtcttaagtaagactcaggttcttataagactccggaaaagtttctcc 26312394  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 110
Target Start/End: Original strand, 11570027 - 11570123
Alignment:
Q  10 caattttttaatattaaaaagtgtggatctcacttaagattggtggtcttaagtgagactccaagtcttataagtctccgaaaaagtttctcctcaataa 109  Q
    |||||||||||||| ||||   |||| ||||| |||||||||| |||||||||| |||| | | |||||||||| |||| ||||||||||||| ||||||    
T  11570027 caattttttaatataaaaa---gtgggtctcatttaagattgggggtcttaagtaagacacga-gtcttataagactccaaaaaagtttctccccaataa 11570122  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 27544382 - 27544313
Alignment:
Q  14 tttttaatattaaaa-agtgtggatctcacttaagattggtggtcttaagtgagactccaagtcttataa 82  Q
    ||||||||||||||| ||||||| || ||||||||||||| |||||||| | |||| || ||||||||||    
T  27544382 tttttaatattaaaagagtgtgggtcccacttaagattgggggtcttaaataagaccccgagtcttataa 27544313  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 49003465 - 49003545
Alignment:
Q  1 attatataacaattttttaatattaaaaa-gtgtggatctcacttaagattggtggtcttaagtgagactccaagtcttata 81  Q
    |||| |||||||||||||||||||||||| |||||| ||||| ||||||||||  ||||||||| |||| |  |||||||||    
T  49003465 attacataacaattttttaatattaaaaaggtgtgg-tctcatttaagattgggagtcttaagtaagaccctgagtcttata 49003545  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 51504644 - 51504686
Alignment:
Q  10 caattttttaatattaaaaagtgtggatctcacttaagattgg 52  Q
    |||||||||||||||||||||||||| || || ||||||||||    
T  51504644 caattttttaatattaaaaagtgtgggtcccatttaagattgg 51504686  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 47364340 - 47364248
Alignment:
Q  15 ttttaatattaaaa-agtgtggatctcacttaagattggtggtcttaagtgagactccaagtcttataagtctccgaaaaagtttctcctcaat 107  Q
    |||||||||||||| |||||| ||| ||||||| |||||  ||||||| | |||| || ||||||||||| | |||||||||||| ||| ||||    
T  47364340 ttttaatattaaaatagtgtgaatcccacttaaaattgggagtcttaaataagaccccgagtcttataagac-ccgaaaaagtttatccccaat 47364248  T

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Target: scaffold0712 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 6161 - 6224
Alignment:
Q  1 attatataacaattttttaatattaaaaagtgtggatctcacttaagattggtggtcttaagtga 65  Q
    |||||||| |||||||||||||||||||||||||||||  |||| ||| ||| ||||||||||||    
T  6161 attatatatcaattttttaatattaaaaagtgtggatcatactttagaatgg-ggtcttaagtga 6224  T

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Target: scaffold0709 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 6179 - 6242
Alignment:
Q  1 attatataacaattttttaatattaaaaagtgtggatctcacttaagattggtggtcttaagtga 65  Q
    |||||||| |||||||||||||||||||||||||||||  |||| ||| ||| ||||||||||||    
T  6179 attatatatcaattttttaatattaaaaagtgtggatcatactttagaatgg-ggtcttaagtga 6242  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 28557260 - 28557201
Alignment:
Q  10 caattttttaatattaaaa-agtgtggatctcacttaagattggtggtcttaagtgagac 68  Q
    ||||||||||||||||||| |||||||||| ||| ||||||||  |||||||||||||||    
T  28557260 caattttttaatattaaaagagtgtggatcccacataagattgagggtcttaagtgagac 28557201  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 12734056 - 12733964
Alignment:
Q  11 aattttttaatattaaaaa-gtgtggatctcacttaagattggtggtcttaagtgagactccaagtcttataagtctccgaaaaagtttctcct 103  Q
    ||||||||||||||||||| |||| | || || ||||||||||||||||||||||||||    ||||||||||| |  | ||||||||||||||    
T  12734056 aattttttaatattaaaaaagtgtaggtcaca-ttaagattggtggtcttaagtgagaccatgagtcttataagacctctaaaaagtttctcct 12733964  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 4797345 - 4797455
Alignment:
Q  11 aattttttaatattaaaaagtgtggatctcacttaagattggtggtcttaagtgagactccaagtcttataagtctccgaaaaagtttctcctcaataaa 110  Q
    |||||||||||||||| | || ||| || |||||||  || | | |||||||||| || |||||||||||||| |  ||||||||||||| | ||||| |    
T  4797345 aattttttaatattaaga-gtttgggtcccacttaaatttagggatcttaagtgaaaccccaagtcttataagaccacgaaaaagtttcttcacaataga 4797443  T
Q  111 gatacctaatag 122  Q
     |||||||||||    
T  4797444 aatacctaatag 4797455  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 38937805 - 38937733
Alignment:
Q  11 aattttttaatattaaaaag-tgtggatctcacttaagattggtggtcttaagtgagactccaagtcttataag 83  Q
    |||||||||||||||||||| ||||| |  ||||||||||||| |||||||||| ||||||   ||||||||||    
T  38937805 aattttttaatattaaaaagatgtgggttccacttaagattgg-ggtcttaagtaagactctgggtcttataag 38937733  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 8673711 - 8673783
Alignment:
Q  12 attttttaatattaaaaa-gtgtggatctcacttaagattggtggtcttaagtgagactccaagtcttataag 83  Q
    |||||||||||||||||| || ||| || || |||||||||  |||||||||||||||  | |||||||||||    
T  8673711 attttttaatattaaaaaagtttgggtcccatttaagattgagggtcttaagtgagacctcgagtcttataag 8673783  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 28562332 - 28562264
Alignment:
Q  1 attatataacaattttttaatattaaaa-agtgtggatctcacttaagattggtggtcttaagtgagac 68  Q
    |||||||  ||||||||||||||||||| || |||| || | ||||||||||  |||||||||||||||    
T  28562332 attatatttcaattttttaatattaaaatagagtgggtcccgcttaagattgagggtcttaagtgagac 28562264  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 28567830 - 28567762
Alignment:
Q  1 attatataacaattttttaatattaaaa-agtgtggatctcacttaagattggtggtcttaagtgagac 68  Q
    |||||||  ||||||||||||||||||| || |||| || | ||||||||||  |||||||||||||||    
T  28567830 attatatttcaattttttaatattaaaatagagtgggtcccgcttaagattgagggtcttaagtgagac 28567762  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 28575423 - 28575355
Alignment:
Q  1 attatataacaattttttaatattaaaa-agtgtggatctcacttaagattggtggtcttaagtgagac 68  Q
    |||||||  ||||||||||||||||||| || |||| || | ||||||||||  |||||||||||||||    
T  28575423 attatatttcaattttttaatattaaaagagagtgggtcccgcttaagattgagggtcttaagtgagac 28575355  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 3705831 - 3705901
Alignment:
Q  11 aattttttaatatt-aaaaagtgtggatctcacttaagattggtggtcttaagtgagactccaagtcttataa 82  Q
    |||||||||||||| ||||||||||| |||||| || ||||| |||||||||||||||| |||| ||||||||    
T  3705831 aattttttaatattaaaaaagtgtgggtctcac-tatgattgatggtcttaagtgagaccccaa-tcttataa 3705901  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 10180714 - 10180782
Alignment:
Q  1 attatataacaattttttaatattaaaaa-gtgtggatctcacttaagattggtggtcttaagtgagac 68  Q
    |||| ||| |||||||||||||||||||| || ||| || |||||||||||||  ||||||||||||||    
T  10180714 attacatatcaattttttaatattaaaaaggtatgggtcccacttaagattgggcgtcttaagtgagac 10180782  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 11346961 - 11346881
Alignment:
Q  42 cttaagattggtggtcttaagtgagactccaagtcttataagtctccgaaaaagtttctcctcaataaagatacctaatag 122  Q
    ||||||||||  |||||||||||| || ||  |||||||||| | || |||||||||||||  ||| ||||||||||||||    
T  11346961 cttaagattgagggtcttaagtgaaaccccgggtcttataagacgccaaaaaagtttctccctaatgaagatacctaatag 11346881  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 26699020 - 26698910
Alignment:
Q  10 caattttttaatattaaaaagtgtggatctcacttaagattggtggtcttaagtgagactccaagtcttataagtctccgaaaaagtttctcctcaataa 109  Q
    |||||||||||| | |||| |||||  || ||||||||| ||| ||||||||||||||| ||   ||||||||| | | |||||| ||||||||||||||    
T  26699020 caattttttaat-taaaaaggtgtgagtcccacttaagaatgg-ggtcttaagtgagacccctgttcttataagacccggaaaaaatttctcctcaataa 26698923  T
Q  110 agatacctaatag 122  Q
      |||||||||||    
T  26698922 gaatacctaatag 26698910  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 2574159 - 2574233
Alignment:
Q  10 caattttttaatattaaaa-agtgtggatctcacttaagattggtggtcttaagtgagactccaagtcttataag 83  Q
    |||||||||||| |||||| |||||||||| | |||||||||||  ||||||| ||||||  || ||||||||||    
T  2574159 caattttttaatgttaaaagagtgtggatcccgcttaagattggaagtcttaaatgagacgtcaggtcttataag 2574233  T

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