View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_low_76 (Length: 250)
Name: NF6277_low_76
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_76 |
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| [»] chr3 (10 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 51 - 250
Target Start/End: Original strand, 24718832 - 24719031
Alignment:
| Q |
51 |
aagttctcttcttccaaaaaggacttactcttgcatggacactctgtggaacagtagtaggacctcctagatattgatttgccatttaatttcttagctg |
150 |
Q |
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| T |
24718832 |
aagttctcttcttccaaaaaggacttactcttgcatggacgctctgtggaacagtagtaggacctcctagatattgatttgccatttaatttcttagctg |
24718931 |
T |
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| Q |
151 |
tagaactgttacatcatggcttgcggtttgctgaactctgcatataatacatgtattaactaccattttttgaaatagttgcaatgaattgtaaattctt |
250 |
Q |
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| T |
24718932 |
tagaactgttacatcatggcttgcggtttgctgaactctgcatataatacatgtattaactaccattttttgaaatagttgcaatgaattgtaaattctt |
24719031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 24640398 - 24640473
Alignment:
| Q |
175 |
ggtttgctgaactctgcatataatacatgtattaactaccattttttgaaatagttgcaatgaattgtaaattctt |
250 |
Q |
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| T |
24640398 |
ggtttgctgaactctgcaaataatacatgtattaactaccatttttcgaaacagttggaattaattgtaaattctt |
24640473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 24675497 - 24675572
Alignment:
| Q |
175 |
ggtttgctgaactctgcatataatacatgtattaactaccattttttgaaatagttgcaatgaattgtaaattctt |
250 |
Q |
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| T |
24675497 |
ggtttgctgaactctgcaaataatacacgtattaactaccatttttcgaaacagtttcaatgaattgtaagttctt |
24675572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 24691599 - 24691674
Alignment:
| Q |
175 |
ggtttgctgaactctgcatataatacatgtattaactaccattttttgaaatagttgcaatgaattgtaaattctt |
250 |
Q |
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| T |
24691599 |
ggtttgccgaactctgcaaataatacaagtattaactaccatatttcgaaacagttgcaatgaattgtaagttctt |
24691674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 155
Target Start/End: Original strand, 24653232 - 24653356
Alignment:
| Q |
32 |
agaaactaaaacttggattaagttctcttcttccaaaaaggacttactcttgcatggacactctgtggaacagtagtaggac--ctcctagatattgatt |
129 |
Q |
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| T |
24653232 |
agaaactataacttgg-ttaagttatcttcttccaaaaaggacttactcttgtatagaggctctgtggatcagcagagggaccactactagatcttgatt |
24653330 |
T |
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| Q |
130 |
tgccatttaatttcttagctgtagaa |
155 |
Q |
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| T |
24653331 |
tgccacttaagttcatagctgtagaa |
24653356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 24652381 - 24652454
Alignment:
| Q |
177 |
tttgctgaactctgcatataatacatgtattaactaccattttttgaaatagttgcaatgaattgtaaattctt |
250 |
Q |
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| T |
24652381 |
tttgctgaactctgcaaataatacatgtattaactacaattttacgaaacagttgcaatgaatcgtacattctt |
24652454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 24713782 - 24713856
Alignment:
| Q |
176 |
gtttgctgaactctgcatataatacatgtattaactaccattttttgaaatagttgcaatgaattgtaaattctt |
250 |
Q |
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| T |
24713782 |
gtttgctgaactctgcatattatacaagtatcaactaccatttttcgaaacccttgcactaaaatgtaaattctt |
24713856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 24717090 - 24717147
Alignment:
| Q |
169 |
gcttgcggtttgctgaactctgcatataatacatgtat-taactaccattttttgaaa |
225 |
Q |
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| T |
24717090 |
gcttgaggtttgctgaactctgcaaataatacatgtatcaaactaccatttttcgaaa |
24717147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 24632645 - 24632721
Alignment:
| Q |
175 |
ggtttgctgaactctgcatataatacatgtatt-aactaccattttttgaaatagttgcaatgaattgtaaattctt |
250 |
Q |
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| T |
24632645 |
ggtttgctgaactctgcaaataatacatgtgttaaactaccatttttcgaaacccttgcaatctaatgtaaattctt |
24632721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 24684678 - 24684732
Alignment:
| Q |
18 |
atcataaattactaagaaactaaaacttggattaagttctcttcttccaaaaaggac |
74 |
Q |
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| T |
24684678 |
atcataaattaa-aagaaactataacttg-attaagttctctgcttccaaaaaggac |
24684732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 278892 - 278810
Alignment:
| Q |
62 |
ttccaaaaaggacttactcttgcatggacactctgtggaacagtagtaggacctc--ctagatattgatttgccatttaattt |
142 |
Q |
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| T |
278892 |
ttccacaaaagacttactcttgcatagaggctctgtggatcagtagcaggacctctactagatcttgattttccacttaattt |
278810 |
T |
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