View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_low_78 (Length: 248)
Name: NF6277_low_78
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_78 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 26414331 - 26414538
Alignment:
| Q |
19 |
caaaggtagtgataggaaaagctataaaaataataataaaacgataacctgtgagcattcatcattttcagttttgttcatcattttggactctagtgta |
118 |
Q |
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| T |
26414331 |
caaaggtagtgataggaaaagctataaaaataataataaaacgataacctgtgagcattcatcattttcagttttgttcatcattttggactctggtgta |
26414430 |
T |
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| Q |
119 |
gttcatgccccactggcagaacacaaccatttcttgtgaataataaaagtaattcaacgcagtgagtcgccagttctaacacagggctagaatgtataac |
218 |
Q |
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| T |
26414431 |
gttcatgccccactggcagaacacaaccatttcttgtgaataataaaagtaattcaaagcagtgagtcaccagttctaacacagggctagaatgtataac |
26414530 |
T |
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| Q |
219 |
gtagtatt |
226 |
Q |
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|||||||| |
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| T |
26414531 |
gtagtatt |
26414538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 27986572 - 27986481
Alignment:
| Q |
135 |
cagaacacaaccatttcttgtgaataataaaagtaattcaacgcagtgagtcgccagttctaacacagggctagaatgtataacgtagtatt |
226 |
Q |
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| T |
27986572 |
cagaacacaaccatttattgtgaataataaaagtaattcaacgcagtgaatcaccagttctaacacagagctagaatggataacgtagtatt |
27986481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 28073104 - 28073013
Alignment:
| Q |
135 |
cagaacacaaccatttcttgtgaataataaaagtaattcaacgcagtgagtcgccagttctaacacagggctagaatgtataacgtagtatt |
226 |
Q |
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| T |
28073104 |
cagaacacaaccatttattgtgaataataaaagtaattcaacgcagtgaatcaccagttctaacacagagctagaatggataacgtagtatt |
28073013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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