View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_low_8 (Length: 528)
Name: NF6277_low_8
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 497; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 17 - 517
Target Start/End: Complemental strand, 13202895 - 13202395
Alignment:
| Q |
17 |
actttcagtaggacctatcattttatataacaacccatcaagaactgctcaagatattcctcctagtgtggttgaaatattggctcaaaaccctaatttt |
116 |
Q |
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| T |
13202895 |
actttcagtaggacctatcattttatataacaacccatcaagaactgctcaagatattcctcctagtgtggttgaaatattggctcaaaaccctaatttt |
13202796 |
T |
|
| Q |
117 |
gttggtatcaaagagtgtatagcaaatgagagagtgaaaaagtatgcaagtcaaggaatttttgtgtggactgcaaatcaaaaagagagtcatgaaggtg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13202795 |
gttggtatcaaagagtgtatagcaaatgagagagtgaaaaagtatgcaagtcaaggaatttttgtgtggactgcaaatcaaaaggagagtcatgaaggtg |
13202696 |
T |
|
| Q |
217 |
ctattggagatgtgtctcttgcaagtaacttgattcctagtttaatggtgaaactcatgaatgaaggaatgaatccttcattgaattcaaagcttattcc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13202695 |
ctattggagatgtgtctcttgcaagtaacttgattcctagtttaatggtgaaactcatgaatgaaggaatgaatccttcattgaattcaaagcttattcc |
13202596 |
T |
|
| Q |
317 |
tttgtttgattggctttctttagaggttatcccaattggtttgaacactgctcttgctcaacttggtgttatcaagcctgtttttaggctaccatatgta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13202595 |
tttgtttgattggctttctttagaggttatcccaattggtttgaacactgctcttgctcaacttggtgttatcaagcctgtttttaggctaccatatgta |
13202496 |
T |
|
| Q |
417 |
cctttgagtagggaaagaagggttgagtttgtcaaattggtgaagcaaattggaagagatcattttgttggagaaaaggatgttgaagttcttgatgatg |
516 |
Q |
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| T |
13202495 |
cctttgagtagggaaagaagggttgagtttgtcaaattggtgaagcaaattggaagagatcattttgttggagaaaaggatgttgaagttcttgatgatg |
13202396 |
T |
|
| Q |
517 |
a |
517 |
Q |
| |
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| |
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| T |
13202395 |
a |
13202395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 287 - 519
Target Start/End: Complemental strand, 13180165 - 13179933
Alignment:
| Q |
287 |
gaatccttcattgaattcaaagcttattcctttgtttgattggctttctttagaggttatcccaattggtttgaacactgctcttgctcaacttggtgtt |
386 |
Q |
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||||||| ||||||||||||||||||| |||||||||||||||||| | ||||| | |||||||| ||||||||||||||||||||||||||| ||| |
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| T |
13180165 |
gaatcctacattgaattcaaagcttatgactttgtttgattggctttttatagagccaagcccaattgctttgaacactgctcttgctcaacttggggtt |
13180066 |
T |
|
| Q |
387 |
atcaagcctgtttttaggctaccatatgtacctttgagtagggaaagaagggttgagtttgtcaaattggtgaagcaaattggaagagatcattttgttg |
486 |
Q |
| |
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|||||||||||||||||||| |||||||||||| ||| | |||| |||| | | |||||| || ||||||||| |||| || || | ||||| ||| |
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| T |
13180065 |
atcaagcctgtttttaggctgccatatgtacctctgactttggaacaaaggatagggtttgtgaatttggtgaaggaaatgggcaggcaacatttcattg |
13179966 |
T |
|
| Q |
487 |
gagaaaaggatgttgaagttcttgatgatgatg |
519 |
Q |
| |
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||||||| |||||| |||||||||| ||||||| |
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| T |
13179965 |
gagaaaaagatgttcaagttcttgaggatgatg |
13179933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 287 - 519
Target Start/End: Complemental strand, 13188427 - 13188195
Alignment:
| Q |
287 |
gaatccttcattgaattcaaagcttattcctttgtttgattggctttctttagaggttatcccaattggtttgaacactgctcttgctcaacttggtgtt |
386 |
Q |
| |
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||||||| ||||||||||||||||||| |||||||||||||||||| | ||||| | |||||||| ||||||||||||||||||||||||||| ||| |
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| T |
13188427 |
gaatcctacattgaattcaaagcttatgactttgtttgattggctttttatagagccaagcccaattgctttgaacactgctcttgctcaacttggggtt |
13188328 |
T |
|
| Q |
387 |
atcaagcctgtttttaggctaccatatgtacctttgagtagggaaagaagggttgagtttgtcaaattggtgaagcaaattggaagagatcattttgttg |
486 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||| | | | |||| |||||| | |||||| || ||||||||| |||| || || | ||||| |||| |
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| T |
13188327 |
atcaagcctgttttcaggcttccatatgtacctcttactttggaacaaagggtagggtttgtgaatttggtgaaggaaatgggcaggcaacatttcgttg |
13188228 |
T |
|
| Q |
487 |
gagaaaaggatgttgaagttcttgatgatgatg |
519 |
Q |
| |
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||||||| |||||| |||||||||| ||||||| |
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| T |
13188227 |
gagaaaaagatgttcaagttcttgaggatgatg |
13188195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 351 - 519
Target Start/End: Complemental strand, 13191487 - 13191319
Alignment:
| Q |
351 |
attggtttgaacactgctcttgctcaacttggtgttatcaagcctgtttttaggctaccatatgtacctttgagtagggaaagaagggttgagtttgtca |
450 |
Q |
| |
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|||| ||||||||||||||||||||||||||| ||||| ||||| |||| ||||||||| |||| ||| | | ||| ||| |||||||| | |
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| T |
13191487 |
attgctttgaacactgctcttgctcaacttggggttattaagccaattttcaggctaccacatgttcctatccctgttgaacagaggagagagtttgtga |
13191388 |
T |
|
| Q |
451 |
aattggtgaagcaaattggaagagatcattttgttggagaaaaggatgttgaagttcttgatgatgatg |
519 |
Q |
| |
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| ||||||||| ||||||| ||||| ||||||||||| ||||| |||||| |||||||||||||||||| |
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| T |
13191387 |
atttggtgaaggaaattggtagagagcattttgttggtgaaaaagatgttcaagttcttgatgatgatg |
13191319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 13188661 - 13188541
Alignment:
| Q |
65 |
tcaagatattcctcctagtgtggttgaaatattggctcaaaaccctaattttgttggtatcaaagagtgtatagcaaatgagagagtgaaaaagtatgca |
164 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||| || |||||||| ||| | ||||||||| | | ||||||||| ||||||| ||| || |
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| T |
13188661 |
tcaagatattcctcctagtgtaattgaaatattggctcaaaatccaaattttgtcggtgtgaaagagtgtgttggaaatgagagggtgaaaatgtacaca |
13188562 |
T |
|
| Q |
165 |
agtcaaggaatttttgtgtgg |
185 |
Q |
| |
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| |||||||| |||||||| |
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| T |
13188561 |
gataaaggaattgttgtgtgg |
13188541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 64 - 154
Target Start/End: Complemental strand, 13191789 - 13191699
Alignment:
| Q |
64 |
ctcaagatattcctcctagtgtggttgaaatattggctcaaaaccctaattttgttggtatcaaagagtgtatagcaaatgagagagtgaa |
154 |
Q |
| |
|
|||| ||||||||||||||||| || |||| |||||| ||||||||||||| || || ||||| |||||||||| |||||| |||||||| |
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| T |
13191789 |
ctcatgatattcctcctagtgtagtcgaaaagttggctgaaaaccctaatttggtcggcatcaaggagtgtataggaaatgatagagtgaa |
13191699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 13180399 - 13180279
Alignment:
| Q |
65 |
tcaagatattcctcctagtgtggttgaaatattggctcaaaaccctaattttgttggtatcaaagagtgtatagcaaatgagagagtgaaaaagtatgca |
164 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| || | || |||||||||||| | ||||||||| | | || |||||| ||||||| ||| || |
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| T |
13180399 |
tcaagatattcctcctagtgtaattgaaatattggctaaacatccaaattttgttggtgtgaaagagtgtgtgggaactgagagggtgaaaatgtacaca |
13180300 |
T |
|
| Q |
165 |
agtcaaggaatttttgtgtgg |
185 |
Q |
| |
|
| |||||||| |||||||| |
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| T |
13180299 |
gataaaggaattgttgtgtgg |
13180279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 488
Target Start/End: Original strand, 28177309 - 28177446
Alignment:
| Q |
351 |
attggtttgaacactgctcttgctcaacttggtgttatcaagcctgtttttaggctaccatatgtacctttgagtagggaaagaagggttgagtttgtca |
450 |
Q |
| |
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|||||||||||||| ||||||||||||||||| ||| ||| ||| ||||| ||||| |||| ||||||| | | ||| | |||| | || |||| || |
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| T |
28177309 |
attggtttgaacacggctcttgctcaacttggagttgtcaggccagttttcaggctgccatttgtacctctccctttggagaaaaggatagaatttgcca |
28177408 |
T |
|
| Q |
451 |
aattggtgaagcaaattggaagagatcattttgttgga |
488 |
Q |
| |
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| ||||||||| ||||||| ||| | |||||||||||| |
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|
| T |
28177409 |
atttggtgaaggaaattggtagacagcattttgttgga |
28177446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 419
Target Start/End: Original strand, 39752758 - 39752826
Alignment:
| Q |
351 |
attggtttgaacactgctcttgctcaacttggtgttatcaagcctgtttttaggctaccatatgtacct |
419 |
Q |
| |
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|||||||||||||| ||||||||||| ||||| ||| ||| ||| ||||| ||||| |||| ||||||| |
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| T |
39752758 |
attggtttgaacacggctcttgctcagcttggagttgtcaggccagttttcaggctgccatttgtacct |
39752826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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