View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6277_low_80 (Length: 245)
Name: NF6277_low_80
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_80 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 2051954 - 2052181
Alignment:
| Q |
1 |
gcatgctttttctccacagcacttaaagcatcttcaaagctctatggacctatgaaggaactgctatcagaagacaatcctcccaaatacagagaaacta |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2051954 |
gcatgctttttctccacagcacttaaagcatcttcaaagctctatggacctatgaaggaactgctatcagaagacaatcctcccaaatacagagaaactt |
2052053 |
T |
|
| Q |
101 |
ctgttgctgattatgtagcctactttcgagcaaaaggactagatggtacttctgctcttacacattacaagatttgaactaagcaatgtggcagaaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2052054 |
ctgttgctgattatgtagcctactttcgagcaaaaggactagatggtacttctgctcttacacattacaagatttgaactaagcaatgtggcagaaaaaa |
2052153 |
T |
|
| Q |
201 |
tataagctcataaataattgacagatct |
228 |
Q |
| |
|
||| |||||||||||||||||||||||| |
|
|
| T |
2052154 |
tattagctcataaataattgacagatct |
2052181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 2055811 - 2056043
Alignment:
| Q |
1 |
gcatgctttttctccacagcacttaaagcatcttcaaagctctatggacctatgaaggaactgctatcagaagacaatcctcccaaatacagagaaacta |
100 |
Q |
| |
|
|||||||||||||| || | |||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||| |||||||| |
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|
| T |
2055811 |
gcatgctttttctcgacgggacttaaagcatcctcaaagctctatggaccaatgaaggaactgttatcagaagacaatcctcctaaatacaaagaaacta |
2055910 |
T |
|
| Q |
101 |
ctgttgctgattatgtagc---ctactttcgagcaaaaggactagatggtacttctgctcttacacattacaagatttgaactaagcaatgtggcagaaa |
197 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| ||||||||| ||||||||| |||||||||| ||||| |
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| T |
2055911 |
ctgttgctgattatgtagcctactactttcgagcaaaaggagtagatggtacttctgcacttgaacattacaaaatttgaactgagcaatgtggtagaaa |
2056010 |
T |
|
| Q |
198 |
aaatataagctc--ataaataattgacagatct |
228 |
Q |
| |
|
||| || ||||| ||||||||||| ||||||| |
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|
| T |
2056011 |
aaacattagctcgtataaataattgtcagatct |
2056043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 2059015 - 2059192
Alignment:
| Q |
1 |
gcatgctttttctccacagcacttaaagcatcttcaaagctctatggacctatgaaggaactgctatcagaagacaatcctcccaaatacagagaaacta |
100 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
2059015 |
gcatgctttttctccacaggactcaaagcatcttcaaaactctatggaccaatgaaggaactattatcagaagacaatcctcccaaatacagagaaactt |
2059114 |
T |
|
| Q |
101 |
ctgttgctgattatgtagcctactttcgagcaaaaggactagatggtacttctgctcttacacattacaagatttgaa |
178 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| |
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|
| T |
2059115 |
ctgttgctgattatgtagcctgctttcgagcaaaaagactagatggtacttctgctcttacacatcacatgatttgaa |
2059192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 29 - 212
Target Start/End: Original strand, 10769496 - 10769679
Alignment:
| Q |
29 |
catcttcaaagctctatggacctatgaaggaactgctatcagaagacaatcctcccaaatacagagaaactactgttgctgattatgtagcctactttcg |
128 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||| | |||||||| ||||||||||| ||| |
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|
| T |
10769496 |
catcctcaaagctctatggacctataaaggaactattatcagaagacaatcctcccatatacagagaaacctcagttgctgactatgtagcctattttga |
10769595 |
T |
|
| Q |
129 |
agcaaaaggactagatggtacttctgctcttacacattacaagatttgaactaagcaatgtggcagaaaaaatataagctcata |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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|
| T |
10769596 |
agcaaaaggactagatggtacttctgctcttacacattacaagatttgaactaagcaatgtggaagaaaaaatattagctcata |
10769679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 2029821 - 2030001
Alignment:
| Q |
1 |
gcatgctttttctccacagcacttaaagcatcttcaaagctctatggacctatgaaggaactgctatcagaagacaatcctcccaaatacagagaaacta |
100 |
Q |
| |
|
||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| | |
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|
| T |
2029821 |
gcatgctttttctccacaggccttaggccatcgtcaaagctctatggacctatgaaggaactattatcagaaaacaatcctcccaaatacagagaaacca |
2029920 |
T |
|
| Q |
101 |
ctgttgctgattatgtagcctactttcgagcaaaaggactagatggtacttctgctcttacacattacaagatttgaacta |
181 |
Q |
| |
|
| |||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2029921 |
cagttgctgattttgcagcctactttaatgcaaaaggactagatggtacttctgctcttacacattacaagatttgaacta |
2030001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 1948212 - 1948011
Alignment:
| Q |
1 |
gcatgctttttctccacagcacttaaagcatcttcaaagctctatggacctatgaaggaactgctatcagaagacaatcctcccaaatacagagaaacta |
100 |
Q |
| |
|
||||||||||| || |||| |||| |||| ||||||||||||||||||||||||||||| |||||||| | |||||| ||||||| |||||||| | |
|
|
| T |
1948212 |
gcatgctttttttcaacaggtcttaggccatcgtcaaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaatatagagaaacca |
1948113 |
T |
|
| Q |
101 |
ctgttgctgattatgtagcctactttcgagcaaaaggactagatggtacttctgctcttacacattacaagatttgaactaagcaatgtggcagaaaaaa |
200 |
Q |
| |
|
| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| |
|
|
| T |
1948112 |
cagttgctgattatgcagcctactttaaagcaaaaggactagatggtacttctgctcttacacattacaagatttgaactaggcagtgtggaagaaaaaa |
1948013 |
T |
|
| Q |
201 |
ta |
202 |
Q |
| |
|
|| |
|
|
| T |
1948012 |
ta |
1948011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 29 - 200
Target Start/End: Original strand, 2034767 - 2034940
Alignment:
| Q |
29 |
catcttcaaagctctatggacctatgaaggaactgctatcagaagacaatcctcccaaatacagagaaactactgttgctgattatgtagcctactttcg |
128 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||| || ||| ||||||||||||| |||||| |
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|
| T |
2034767 |
catcctcaaagctctatggacctataaaggaactattatcagaagacaatcctcctaaatacagagaaacaacggtttctgattatgtagcttactttga |
2034866 |
T |
|
| Q |
129 |
agcaaaaggactagatggtacttctgctcttacacattacaagatttgaa--ctaagcaatgtggcagaaaaaa |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||| |
|
|
| T |
2034867 |
aaaaaaaggactagatggtacttctgctcttacacattacaagatttgacacccaggcaatgtggcagaaaaaa |
2034940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 29 - 200
Target Start/End: Original strand, 2048088 - 2048259
Alignment:
| Q |
29 |
catcttcaaagctctatggacctatgaaggaactgctatcagaagacaatcctcccaaatacagagaaactactgttgctgattatgtagcctactttcg |
128 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||| || ||||| || |||||| |||||||| |
|
|
| T |
2048088 |
catcttcaaagctctatggacctatgaaagaactattatcagaagacaatcctcctaaatacagagaaaccacagttgcagactatgtaacctactttgt |
2048187 |
T |
|
| Q |
129 |
agcaaaaggactagatggtacttctgctcttacacattacaagatttgaactaagcaatgtggcagaaaaaa |
200 |
Q |
| |
|
| ||||||| | |||||||||||||||||||||||||||| |||||||||| |||||||| |||||||| |
|
|
| T |
2048188 |
aaaaaaaggattggatggtacttctgctcttacacattacaggatttgaactggacaatgtggaagaaaaaa |
2048259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 29 - 200
Target Start/End: Original strand, 2038845 - 2039018
Alignment:
| Q |
29 |
catcttcaaagctctatggacctatgaaggaactgctatcagaagacaatcctcccaaatacagagaaactactgttgctgattatgtagcctactttcg |
128 |
Q |
| |
|
|||| ||||||||||||||||| || ||||| || ||||||||||||||||||| |||||||||||||| || |||||||| ||| |||| |||||| |
|
|
| T |
2038845 |
catcctcaaagctctatggaccaataaaggatctattatcagaagacaatcctcctaaatacagagaaaccacagttgctgactatctagcgtactttgt |
2038944 |
T |
|
| Q |
129 |
agcaaaaggactagatggtacttctgctcttacacattacaagatttg--aactaagcaatgtggcagaaaaaa |
200 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||||||||||| | ||| || ||||||||||||||| |
|
|
| T |
2038945 |
agaaaaaggattagatggtacttctgctcttacacattacaagatttgacacctaggctatgtggcagaaaaaa |
2039018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 191
Target Start/End: Complemental strand, 48904959 - 48904799
Alignment:
| Q |
34 |
tcaaagctctatggacctatgaaggaactgctatcagaagacaatcctcccaaatacagagaaactactgttgctgattatgtagcctactttc---gag |
130 |
Q |
| |
|
|||| ||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||| || ||| || |||| || ||||| || || |
|
|
| T |
48904959 |
tcaaggctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaaccacaattggagactatgcagtctactctccagcag |
48904860 |
T |
|
| Q |
131 |
caaaaggactagatggtacttctgctcttacacattacaagatttgaactaagcaatgtgg |
191 |
Q |
| |
|
||||| |||||| | ||||||||| |||| |||||||||| |||||||||||||||||||| |
|
|
| T |
48904859 |
caaaaagactaggttgtacttctgttctttcacattacaaaatttgaactaagcaatgtgg |
48904799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 177
Target Start/End: Complemental strand, 28734983 - 28734842
Alignment:
| Q |
36 |
aaagctctatggacctatgaaggaactgctatcagaagacaatcctcccaaatacagagaaactactgttgctgattatgtagcctactttcgagcaaaa |
135 |
Q |
| |
|
|||||| ||||||||||| | ||| | ||||||||||||| ||||||| ||| |||||||| || |||||||||||||||||||||| | |||||| |
|
|
| T |
28734983 |
aaagctttatggacctataacagaattattatcagaagacaaccctcccagatatagagaaaccacgtttgctgattatgtagcctacttatgtgcaaaa |
28734884 |
T |
|
| Q |
136 |
ggactagatggtacttctgctcttacacattacaagatttga |
177 |
Q |
| |
|
|| || ||||| ||||||| |||| ||||| |||| ||||| |
|
|
| T |
28734883 |
gggcttgatggcacttctgttcttcaacatttcaagctttga |
28734842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 28742116 - 28742028
Alignment:
| Q |
36 |
aaagctctatggacctatgaaggaactgctatcagaagacaatcctcccaaatacagagaaactactgttgctgattatgtagcctact |
124 |
Q |
| |
|
|||||||||||||||||| || ||| | ||||||||||||| ||||| | ||| |||||||| ||| || | |||| ||||||||||| |
|
|
| T |
28742116 |
aaagctctatggacctataaaagaaattttatcagaagacaaccctccaagatatagagaaaccacttttacagattttgtagcctact |
28742028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 28699483 - 28699396
Alignment:
| Q |
36 |
aaagctctatggacctatgaaggaactgctatcagaagacaatcctcccaaatacagagaaactactgttgctgattatgtagcctac |
123 |
Q |
| |
|
|||||| ||||||||||| | ||| | |||||||| |||| ||||||| ||||| |||||| ||||||||||||| | |||||||| |
|
|
| T |
28699483 |
aaagctttatggacctataacagaattattatcagaaaacaaccctcccagatacaaagaaaccactgttgctgattttatagcctac |
28699396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 28782907 - 28782848
Alignment:
| Q |
65 |
tatcagaagacaatcctcccaaatacagagaaactactgttgctgattatgtagcctact |
124 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||| || | || ||||||||||||| |
|
|
| T |
28782907 |
tatcagaagacaatcctcccaaatacaaagaaataactatttcagaatatgtagcctact |
28782848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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