View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_low_82 (Length: 244)
Name: NF6277_low_82
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_82 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 8891618 - 8891391
Alignment:
| Q |
1 |
cagtagtcgttcctcttgccattgaggaagcaagagaggctccctacctcatcgtcatggtgacataagacgagaggaatgttccccaacacgacgtcac |
100 |
Q |
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||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8891618 |
cagtagtcgttcctcttaccgttgaggaagcaagagaggctcctcacctcatcgtcatggtgacataagacgagaggaatgttccccaacacgacgtcac |
8891519 |
T |
|
| Q |
101 |
aaccaccatagaatagggcctttcacaagaagaaatccttgaatgcccaattgcatgcgcctttaagaaacctttaaagcttgaaaactatgacagaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8891518 |
aaccaccatagaatagggcctttcacaagaagaaatccttgaatgcccaattgcatgcgcctttaagaaacctttaaagcttgaaaactatgacggaacg |
8891419 |
T |
|
| Q |
201 |
aatgattctaaagaacacattgatactt |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
8891418 |
aatgattctaaagaacacattgatactt |
8891391 |
T |
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