View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6277_low_88 (Length: 239)
Name: NF6277_low_88
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_88 |
 | |
|
| [»] scaffold0028 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 22072675 - 22072454
Alignment:
| Q |
1 |
tttatagctaaatcaatcaggacaatttgtcttattattggttcactatctacttccattattatagtatctaataattacacgttagttcatgaactaa |
100 |
Q |
| |
|
||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22072675 |
tttatagctaaataaattaggacaattcgtcttattattggttcactatctacttccgttattatagtatctaataattacatgttagttcatgaactaa |
22072576 |
T |
|
| Q |
101 |
caatgatctacttccaattattttcatgtgtaattctagattattttgatatcggagatcctgattgcatttgtcaacaatgtggagcagaaatgtggta |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22072575 |
caattatctacttccaattattttcatgtgtaattgtagattattttgatatcggagatcctgattgcatttgtcaacaatgtggagcagaaatgtggta |
22072476 |
T |
|
| Q |
201 |
tttagaaaggaaacataaatct |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
22072475 |
tttagaaaggaaacataaatct |
22072454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 22046186 - 22046130
Alignment:
| Q |
42 |
ttcactatctacttccattattatagtatctaataattacacgttagttcatgaact |
98 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||| |||||||||||||| |
|
|
| T |
22046186 |
ttcactatctacttccattattatcgtatttaataattacatattagttcatgaact |
22046130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 118588 - 118503
Alignment:
| Q |
137 |
tagattattttgatatcggagatcctgattgcatttgtcaacaatgtggagcagaaatgtggtatttagaaaggaaacataaatct |
222 |
Q |
| |
|
||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
118588 |
tagattattttgacatcggtgatccagattgcatttgtcaacaatgtggagcagaaatgtggtatctagaaaggaaacataaatct |
118503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University