View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6277_low_89 (Length: 238)
Name: NF6277_low_89
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_89 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 43928281 - 43928059
Alignment:
| Q |
1 |
gaaaaaatattcatacgatcgtcttcatcttcacctcaaaaaacaattttgtgagcttcctcacaaaccatttccaccttcttttccatcatacattcct |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43928281 |
gaaaaaatattcatatgatcgtcttcatcttcacctcaaaaaacaattttgtgagcttcctcacaaaccatttccaccttcttttccatcatacattcct |
43928182 |
T |
|
| Q |
101 |
aaagataagtttttaaaatacttagaagactatgtttcacacttcaaaatcaatcctctgtatcacagaacagttgagaatgcagagtatgatgaaggtt |
200 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43928181 |
aaagataagtttttacaatacttagaggactatgtttcacacttcaaaatcaatcctctgtatcacagaacagttgagaatgcagagtatgatgaaggtt |
43928082 |
T |
|
| Q |
201 |
ctgagaaatggaaggtgaaggct |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
43928081 |
ctgagaaatggaaggtgaaggct |
43928059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University