View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_low_9 (Length: 525)
Name: NF6277_low_9
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 17 - 516
Target Start/End: Original strand, 54010530 - 54011029
Alignment:
| Q |
17 |
tccacgtcttctggtaatctcatggctgctagatcaccataagtacaatctcttctgaatgataaaattggtgggacaacaaattgatgaaaatgggttc |
116 |
Q |
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| T |
54010530 |
tccacgtcttctggtaatctcatggctgctagatcaccataagtacaatctcttctgaatgataaaattggtgggacaacaaattgatgaaaatgggttc |
54010629 |
T |
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| Q |
117 |
cacttggtgcccaactttgctctcttggtgttatccacttgccaacaatccaggcctgtatcaagacatgtaaccattatgcaaattacattaatattct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54010630 |
cacttggtgcccaactttgctctcttggtgttatccacttgccaacaatccaggcctgtatcaagacatgtaaccattatgcaaattacattaatattct |
54010729 |
T |
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| Q |
217 |
caacttctaaacatggttcatactcaaatttaaacgtacttatattatagctaaatttggaaagttgattcttatttattttcgagctcaattacataga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54010730 |
caacttctaaacatggttcatactcaaatttaaacgtacttatattatagctaaatttggaaagttgattcttatttattttcgagctcaattacataga |
54010829 |
T |
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| Q |
317 |
ctaatttcacaagttgtagtagaactgtccacggagttgacatctcaaaagatgtttctctgtacatcttgtgagatgtcgaattcatgaccaagttgtt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54010830 |
ctaatttcacaagttgtagtagaactgtccacggagttgacatctcaaaatatgtttctctgtacatcttgtgagatgtcgaattcatgaccaagttgtt |
54010929 |
T |
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| Q |
417 |
ccgaaaacgacaactgaaatctaatatttgtgatgtgctaataaaaattggcatgtgaggatgataaagagtctctattaaacatgaaggtaagtataat |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54010930 |
ccgaaaacgacaactgaaatctaatatttgtgatgtgctaataaaaattggcatgtgaggatgataaagagtctctattaaacatgaaggtaagtataat |
54011029 |
T |
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