View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_low_91 (Length: 237)
Name: NF6277_low_91
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_91 |
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| [»] scaffold0256 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 16873689 - 16873484
Alignment:
| Q |
17 |
cacatacatttgaaaaaagatgggatttagtacctgttctgaagtctttttatgataacgactccacgcaactccttgtgcgagcaattctttcaacctt |
116 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
16873689 |
cacatacattttaaaaaagatgggatttagtacctgttctgaagtctttttatgataacgactccgcgcaactccttgtgcaagcaattctttcaacctt |
16873590 |
T |
|
| Q |
117 |
ccaccgaaataaagttcagacagacagtcatgtgcttcagaaaccagcccagcacgaaaagcacataggcctaactgtgacatagccctgttaaaacgta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16873589 |
ccaccgaaataaagttcagacagacagtcatgtgcttcagaaaccagcccagcaggaaaagcacataggcctaactgtgacatagccctgttaaaacgta |
16873490 |
T |
|
| Q |
217 |
tctgtg |
222 |
Q |
| |
|
|||||| |
|
|
| T |
16873489 |
tctgtg |
16873484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 16571685 - 16571484
Alignment:
| Q |
17 |
cacatacatttgaaaaaagatgggatttagtacctgttctgaagtctttttatgataacgactccacgcaactccttgtgcgagcaattctttcaacctt |
116 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||| || |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
16571685 |
cacatacattttaaaaaagataggatttagtacctgttttggagtcttttcatgataacgactccgcgcaactccttgtgcgagcaattctttcaacctt |
16571586 |
T |
|
| Q |
117 |
ccaccgaaataaagttcagacagacagtcatgtgcttcagaaaccagcccagcacgaaaagcacataggcctaactgtgacatagccctgttaaaacgta |
216 |
Q |
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||| | |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
16571585 |
ccagcagaataaagttcag----acagtcatgtgcttcagaaaccagcccagcacgaatagcacataggcctaactgtgacatagccctgttaaaatgta |
16571490 |
T |
|
| Q |
217 |
tctgtg |
222 |
Q |
| |
|
|||||| |
|
|
| T |
16571489 |
tctgtg |
16571484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 12030 - 12235
Alignment:
| Q |
17 |
cacatacatttgaaaaaagatgggatttagtacctgttctgaagtctttttatgataacgactccacgcaactccttgtgcgagcaattctttcaacctt |
116 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| || |||||||||||| ||||||||||||||||||| |
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| T |
12030 |
cacatacattttaaaaaagatgggatttagtacctgttctagagtcttttcatgataacgattctgtgcaactccttgtatgagcaattctttcaacctt |
12129 |
T |
|
| Q |
117 |
ccaccgaaataaagttcagacagacagtcatgtgcttcagaaaccagcccagcacgaaaagcacataggcctaactgtgacatagccctgttaaaacgta |
216 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
12130 |
ccaccggaataaagttcagactgacagtcatgtgcttcagaaaccagcccagcacgaaaagcacataggcctaactatgacatagccctgttaaaacgta |
12229 |
T |
|
| Q |
217 |
tctgtg |
222 |
Q |
| |
|
|||||| |
|
|
| T |
12230 |
tctgtg |
12235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 14399 - 14465
Alignment:
| Q |
156 |
gaaaccagcccagcacgaaaagcacataggcctaactgtgacatagccctgttaaaacgtatctgtg |
222 |
Q |
| |
|
||||||| |||| ||||||||||||||| ||||| |||||||||||||||||| || ||||||||| |
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|
| T |
14399 |
gaaaccatcccatcacgaaaagcacatacacctaattgtgacatagccctgttagaatgtatctgtg |
14465 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 24 - 222
Target Start/End: Complemental strand, 32791778 - 32791581
Alignment:
| Q |
24 |
atttgaaaaaagatgggatttagtacctgttctgaagtctttttatgataacgactccacgcaactccttgtgcgagcaattctttcaaccttccaccga |
123 |
Q |
| |
|
|||||||||| || ||||||||||||||| | || |||||||| ||||||| |||||| |||||||||||||||||||||||||||| |||||||||| |
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|
| T |
32791778 |
atttgaaaaaggaagggatttagtacctgctttggagtcttttcatgataatgactccgtgcaactccttgtgcgagcaattctttcacccttccaccgg |
32791679 |
T |
|
| Q |
124 |
aataaagttcagacagacagtcatgtgcttcagaaaccagcccagcacgaaaagcacataggcctaactgtgacatagccctgttaaaacgtatctgtg |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||| |
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| T |
32791678 |
gataaagttcagacagacagtcatgtgcttcagaaatcagcccagcacgaaaagcacatagacctaac-gtgacatagccctgttaaaaagtatctgtg |
32791581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 39 - 212
Target Start/End: Complemental strand, 21628022 - 21627849
Alignment:
| Q |
39 |
ggatttagtacctgttctgaagtctttttatgataacgactccacgcaactccttgtgcgagcaattctttcaaccttccaccgaaataaagttcagaca |
138 |
Q |
| |
|
||||||| ||||||||||| ||| |||| |||||||| ||||| |||||||||||||||||||||||| ||| |||||||||| |||||||||||||| |
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|
| T |
21628022 |
ggatttaatacctgttctggagttttttcatgataacaactccgtgcaactccttgtgcgagcaattctctcacccttccaccgggataaagttcagaca |
21627923 |
T |
|
| Q |
139 |
gacagtcatgtgcttcagaaaccagcccagcacgaaaagcacataggcctaactgtgacatagccctgttaaaa |
212 |
Q |
| |
|
|||| |||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
21627922 |
gacattcatgtgcttcagaaatcagtccagcacgaaaagcacatagacctaactgtgacatagccctgttaaaa |
21627849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 29 - 222
Target Start/End: Original strand, 235643 - 235836
Alignment:
| Q |
29 |
aaaaaagatgggatttagtacctgttctgaagtctttttatgataacgactccacgcaactccttgtgcgagcaattctttcaaccttccaccgaaataa |
128 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||| ||||||||| ||| | ||||||||| || ||||||||||||| | ||||| ||||| |
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|
| T |
235643 |
aaaaaagctgggatttagtacctgttctggagtcttttcatgataacggctctgtgaaactccttgcgcaagcaattctttcacacgcccaccagaataa |
235742 |
T |
|
| Q |
129 |
agttcagacagacagtcatgtgcttcagaaaccagcccagcacgaaaagcacataggcctaactgtgacatagccctgttaaaacgtatctgtg |
222 |
Q |
| |
|
||||| |||| |||| |||| |||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||| |||| |||| |
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|
| T |
235743 |
agttccgacaaacagccatgcgcttcagaaaccagcccaacccgaaaagcacatagacctaactgtgacatagccctgttaaaaagtatttgtg |
235836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 31 - 222
Target Start/End: Original strand, 48300068 - 48300259
Alignment:
| Q |
31 |
aaaagatgggatttagtacctgttctgaagtctttttatgataacgactccacgcaactccttgtgcgagcaattctttcaaccttccaccgaaataaag |
130 |
Q |
| |
|
||||| ||||||| ||||||||||||| |||||||| ||||||||| || | |||||||||||| |||| |||||||| || |||||| ||||||| |
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|
| T |
48300068 |
aaaagctgggattgagtacctgttctggagtcttttcatgataacggttctgtgaaactccttgtgcaagcagttctttcacccgtccaccagaataaag |
48300167 |
T |
|
| Q |
131 |
ttcagacagacagtcatgtgcttcagaaaccagcccagcacgaaaagcacataggcctaactgtgacatagccctgttaaaacgtatctgtg |
222 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48300168 |
ttcagacaaacagccatgtgcttcagaaaccaggccaacacgaaaagcacatagacctaactgtgacatagccctgttaaagagtatctgtg |
48300259 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 29 - 222
Target Start/End: Complemental strand, 7390162 - 7389969
Alignment:
| Q |
29 |
aaaaaagatgggatttagtacctgttctgaagtctttttatgataacgactccacgcaactccttgtgcgagcaattctttcaaccttccaccgaaataa |
128 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||| ||||||||| ||| | ||||||||| || |||||||| |||| || |||||| ||||| |
|
|
| T |
7390162 |
aaaaaagctgggatttagtacctgttctggggtcttttcatgataacggctctgtgaaactccttgcgcaagcaattccttcacccgtccaccagaataa |
7390063 |
T |
|
| Q |
129 |
agttcagacagacagtcatgtgcttcagaaaccagcccagcacgaaaagcacataggcctaactgtgacatagccctgttaaaacgtatctgtg |
222 |
Q |
| |
|
|||||||||| |||| |||| |||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
7390062 |
agttcagacaaacagccatgcgcttcagaaaccagcccagcccgaaaagcacaaagacctaactgtgacatagccctgttaaaaagtatttgtg |
7389969 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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