View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6277_low_95 (Length: 228)
Name: NF6277_low_95
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_95 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 39366046 - 39366246
Alignment:
| Q |
16 |
gatatattggtgggaacatcacaatatctggctatccaaagaagcaagatacctttgcaagaatttctggatactgcgagcaaactgatatccattctcc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39366046 |
gatatattggtgggaacatcacaatatctggctatccaaagaagcaagaaacctttgcaagaatttctggatactgcgagcaaactgatatccattctcc |
39366145 |
T |
|
| Q |
116 |
tcatgttactgcctatgaatctttactctattcagcatggctctgattgtcccctgacatcaatgctgaaaccagaaaggttagcatcagaatcacttga |
215 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39366146 |
tcatgttactgtctatgaatctttactctattcagcatggctccgattgtcccctgacatcaatgctgaaaccagaaaggttagcatcagaatcacttga |
39366245 |
T |
|
| Q |
216 |
t |
216 |
Q |
| |
|
| |
|
|
| T |
39366246 |
t |
39366246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 39547628 - 39547445
Alignment:
| Q |
16 |
gatatattggtgggaacatcacaatatctggctatccaaagaagcaagatacctttgcaagaatttctggatactgcgagcaaactgatatccattctcc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
39547628 |
gatatattggtgggaacatcacaatatctggctatccaaagaagcaagatacctttgcaagaatttcaggatactgtgagcaaactgatatccattctcc |
39547529 |
T |
|
| Q |
116 |
tcatgttactgcctatgaatctttactctattcagcatggctctgattgtcccctgacatcaatgctgaaaccagaaaggttag |
199 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39547528 |
tcatgttactgtctatgaatctttgctctattcagcatggctccgattgtcccctgacatcaatgctgaaaccagaaaggttag |
39547445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 39338693 - 39338876
Alignment:
| Q |
16 |
gatatattggtgggaacatcacaatatctggctatccaaagaagcaagatacctttgcaagaatttctggatactgcgagcaaactgatatccattctcc |
115 |
Q |
| |
|
||||||||||||||||||||| ||| || |||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39338693 |
gatatattggtgggaacatcaaaatttccggctttccaaagaagcaagaaacctttgcaagaatttctggatactgtgagcaaactgatatccattctcc |
39338792 |
T |
|
| Q |
116 |
tcatgttactgcctatgaatctttactctattcagcatggctctgattgtcccctgacatcaatgctgaaaccagaaaggttag |
199 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39338793 |
tcatgttactgtctatgaatctttgctctattcagcatggctccgattgtcccctgacatcaatgctgaaaccagaaaggttag |
39338876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 39538170 - 39537987
Alignment:
| Q |
16 |
gatatattggtgggaacatcacaatatctggctatccaaagaagcaagatacctttgcaagaatttctggatactgcgagcaaactgatatccattctcc |
115 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
39538170 |
gatatattggtgggaacatcacaatttctggctatccaaagaagcaagatacctttgcaagaatttcaggatactgtgagcaaactgatatccattctcc |
39538071 |
T |
|
| Q |
116 |
tcatgttactgcctatgaatctttactctattcagcatggctctgattgtcccctgacatcaatgctgaaaccagaaaggttag |
199 |
Q |
| |
|
| ||||||||| |||||||||||| |||||||||||||||||| | ||||| || |||||||||||||||||||| |||||||| |
|
|
| T |
39538070 |
ttatgttactgtctatgaatctttgctctattcagcatggctccggttgtctccagacatcaatgctgaaaccaggaaggttag |
39537987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 39353536 - 39353719
Alignment:
| Q |
16 |
gatatattggtgggaacatcacaatatctggctatccaaagaagcaagatacctttgcaagaatttctggatactgcgagcaaactgatatccattctcc |
115 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39353536 |
gatatattggtgggaacatcacaatttccggctatccaaaaaagcaagaaacctttgcaagaatttctggatactgtgagcaaactgatatccattctcc |
39353635 |
T |
|
| Q |
116 |
tcatgttactgcctatgaatctttactctattcagcatggctctgattgtcccctgacatcaatgctgaaaccagaaaggttag |
199 |
Q |
| |
|
| ||||||||| |||||||||||| |||||| || |||||||| | |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39353636 |
ttatgttactgtctatgaatctttgctctatccaacatggctccggttgtccccagacatcaatgctgaaaccagaaaggttag |
39353719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 39564407 - 39564224
Alignment:
| Q |
16 |
gatatattggtgggaacatcacaatatctggctatccaaagaagcaagatacctttgcaagaatttctggatactgcgagcaaactgatatccattctcc |
115 |
Q |
| |
|
||||||||||||||||||||||||| || |||| ||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||||||| ||||| |
|
|
| T |
39564407 |
gatatattggtgggaacatcacaatttccggctttccaaagaagcaagaaacctttgcaagaatttctgggtactgtgagcaaaatgatatccactctcc |
39564308 |
T |
|
| Q |
116 |
tcatgttactgcctatgaatctttactctattcagcatggctctgattgtcccctgacatcaatgctgaaaccagaaaggttag |
199 |
Q |
| |
|
| ||||||||| |||||||||||| |||||||||||||||||| | |||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
39564307 |
ttatgttactgtctatgaatctttgctctattcagcatggctccggttgtccccagacatcaatgctgaaactagaaaggttag |
39564224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 1084966 - 1084778
Alignment:
| Q |
16 |
gatatattggtgggaacatcacaatatctggctatccaaagaa--gcaagatacctttgcaagaatttctggatactgcgagcaaactgatatccattct |
113 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||| |||| |||||| || ||| ||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
1084966 |
gatatattggtgggaacatcataatttctggctatccatagaaaagcaagaaacatttacaagaatttctggatactgtgagcaaatagatatccattct |
1084867 |
T |
|
| Q |
114 |
cctcatgttactgcctatgaatctttactctattcagcatggctctgattgtcccctgacatcaatgctgaaaccagaaaggttagcat |
202 |
Q |
| |
|
|||||| |||||| ||| || ||||| |||||||||||||||||| ||||| || | ||||| |||||||||||||| ||||||||||| |
|
|
| T |
1084866 |
cctcattttactgtctacgagtctttgctctattcagcatggctccgattgacctcggacattaatgctgaaaccaggaaggttagcat |
1084778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 39589456 - 39589315
Alignment:
| Q |
16 |
gatatattggtgggaacatcacaatatctggctatccaaagaagcaagatacctttgcaagaatttctggatactgcgagcaaactgatatccattctcc |
115 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| ||||| ||||||||||| || ||||||||||||||||||||||| ||||||| ||||||||| ||||| |
|
|
| T |
39589456 |
gatatattggtgggaccatcacaatttctggatatcctaagaagcaagaaacatttgcaagaatttctggatactgtgagcaaaatgatatccactctcc |
39589357 |
T |
|
| Q |
116 |
tcatgttactgcctatgaatctttactctattcagcatggct |
157 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
39589356 |
tcatgttactgtatatgaatctttgctctattcagcatggct |
39589315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 39622224 - 39622043
Alignment:
| Q |
16 |
gatatattggtgggaacatcacaatatctggctatccaaagaagcaagatacctttgcaagaatttctggatactgcgagcaaactgatatccattctcc |
115 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||| |||||||||| || |||||||||||| ||| ||||||||| || |||| | ||||||||||||| |
|
|
| T |
39622224 |
gatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaattatatccattctcc |
39622125 |
T |
|
| Q |
116 |
tcatgttactgcctatgaatctttactctattcagcatggctctgattgtcccctgacatcaatgctgaaaccagaaaggtt |
197 |
Q |
| |
|
| ||||||||| |||||||| || |||| ||| ||||||||| ||||||| | || ||||||||||||||||| |||||| |
|
|
| T |
39622124 |
ttatgttactgtatatgaatcattgctcttttcggcatggctccgattgtctgcagaaatcaatgctgaaaccaggaaggtt |
39622043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 39575218 - 39575076
Alignment:
| Q |
16 |
gatatattggtgggaacatcacaatatctggctatccaaagaagcaagatacctttgcaagaatttctggatactgcgagcaaactgatatccattctcc |
115 |
Q |
| |
|
|||||||| |||||||||||||| | || || |||| || |||||||| ||||||||||||||||| |||||||| ||||||| |||||| || ||||| |
|
|
| T |
39575218 |
gatatattagtgggaacatcacagtttccgggcatcccaaaaagcaagaaacctttgcaagaatttccggatactgtgagcaaaatgatatacactctcc |
39575119 |
T |
|
| Q |
116 |
tcatgttactgcctatgaatctttactctattcagcatggctc |
158 |
Q |
| |
|
|||| |||| | |||||| ||||| |||||||||||||||||| |
|
|
| T |
39575118 |
tcatattacggtctatgagtctttgctctattcagcatggctc |
39575076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 42171886 - 42171837
Alignment:
| Q |
87 |
tactgcgagcaaactgatatccattctcctcatgttactgcctatgaatc |
136 |
Q |
| |
|
|||||||| || | |||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
42171886 |
tactgcgaacagaatgatattcattctcctcatgttactgtctatgaatc |
42171837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 42133087 - 42133023
Alignment:
| Q |
93 |
gagcaaactgatatccattctcctcatgttactgcctatgaatctttactctattcagcatggct |
157 |
Q |
| |
|
||||||| |||||| |||||||| |||| |||| ||||||||||||||| | ||| |||||||| |
|
|
| T |
42133087 |
gagcaaaatgatattcattctccctatgtaactgtctatgaatctttactattttctgcatggct |
42133023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 2160998 - 2160857
Alignment:
| Q |
16 |
gatatattggtgggaacatcacaatatctggctatccaaagaagcaagatacctttgcaagaatttctggatactgcgagcaaactgatatccattctcc |
115 |
Q |
| |
|
||||||||| ||| |||||||||||||| |||||||||||||| ||| | || ||||| | || || ||||| ||||||||| |||||||||||| || |
|
|
| T |
2160998 |
gatatattgatggaaacatcacaatatccggctatccaaagaatcaaaaaacatttgctcgcatatcgggatattgcgagcaatttgatatccattcacc |
2160899 |
T |
|
| Q |
116 |
tcatgttactgcctatgaatctttactctattcagcatggct |
157 |
Q |
| |
|
| ||||||| | ||||||||||| | ||||| |||||||| |
|
|
| T |
2160898 |
taatgttacagtttatgaatctttgttatattcggcatggct |
2160857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 43457660 - 43457588
Alignment:
| Q |
54 |
aagaagcaagatacctttgcaagaatttctggatactgcgagcaaactgatatccattctcctcatgttactg |
126 |
Q |
| |
|
||||| ||||| || |||||||||||||||||||||||||| ||||| ||||||||||| || || ||||||| |
|
|
| T |
43457660 |
aagaatcaagaaacatttgcaagaatttctggatactgcgaacaaaccgatatccattcaccacaagttactg |
43457588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 44223264 - 44223164
Alignment:
| Q |
57 |
aagcaagatacctttgcaagaatttctggatactgcgagcaaactgatatccattctcctcatgttactgcctatgaatctttactctattcagcatggc |
156 |
Q |
| |
|
|||||||| || ||||| ||||||||||| ||||| ||||| | |||||||||||| || |||||||| | ||||| ||||| || ||||| || |||| |
|
|
| T |
44223264 |
aagcaagaaacatttgctagaatttctggctactgtgagcagaatgatatccattcaccgcatgttacagtttatgagtctttgctttattcggcgtggc |
44223165 |
T |
|
| Q |
157 |
t |
157 |
Q |
| |
|
| |
|
|
| T |
44223164 |
t |
44223164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 44234101 - 44233986
Alignment:
| Q |
42 |
tctggctatccaaagaagcaagatacctttgcaagaatttctggatactgcgagcaaactgatatccattctcctcatgttactgcctatgaatctttac |
141 |
Q |
| |
|
||||| ||||| || |||||||| || ||||| ||||| || || ||||| ||||| | |||||||||||| ||||||||||| | ||||| ||||| | |
|
|
| T |
44234101 |
tctgggtatcctaaaaagcaagaaacatttgctagaatctccggttactgtgagcagaatgatatccattcacctcatgttacagtttatgagtctttgc |
44234002 |
T |
|
| Q |
142 |
tctattcagcatggct |
157 |
Q |
| |
|
| || ||||| ||||| |
|
|
| T |
44234001 |
tttactcagcgtggct |
44233986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 49773249 - 49773323
Alignment:
| Q |
84 |
ggatactgcgagcaaactgatatccattctcctcatgttactgcctatgaatctttactctattcagcatggctc |
158 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| |||||||||| |||||||||| | | ||||| ||||||||| |
|
|
| T |
49773249 |
ggatactgtgagcaaactgatatccactctccccatgttactgtctatgaatctcttgtttattctgcatggctc |
49773323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 4501297 - 4501368
Alignment:
| Q |
54 |
aagaagcaagatacctttgcaagaatttctggatactgcgagcaaactgatatccattctcctcatgttact |
125 |
Q |
| |
|
||||| ||||| |||||||||||| ||||||| || || || ||||||||||| ||||| ||||| |||||| |
|
|
| T |
4501297 |
aagaaccaagaaacctttgcaagagtttctggttattgtgaacaaactgatattcattcacctcaagttact |
4501368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 2887053 - 2887110
Alignment:
| Q |
76 |
gaatttctggatactgcgagcaaactgatatccattctcctcatgttactgcctatga |
133 |
Q |
| |
|
|||| ||||| || || ||||| | |||||||||||||||||||||||||| |||||| |
|
|
| T |
2887053 |
gaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctatga |
2887110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 2897323 - 2897266
Alignment:
| Q |
76 |
gaatttctggatactgcgagcaaactgatatccattctcctcatgttactgcctatga |
133 |
Q |
| |
|
|||| ||||| || || ||||| | |||||||||||||||||||||||||| |||||| |
|
|
| T |
2897323 |
gaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctatga |
2897266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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