View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6278_high_3 (Length: 387)
Name: NF6278_high_3
Description: NF6278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6278_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 42 - 365
Target Start/End: Original strand, 9335796 - 9336113
Alignment:
| Q |
42 |
agtaacacagtaaccaccgtcacaatttggaggaagcataaaagtgatattgattctgcataaccggtgaaggatttccctctgctcatgnnnnnnngct |
141 |
Q |
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| T |
9335796 |
agtaacacagtaaccaccatcacaatttggaggaagcttaaaagtgatattgattcctcataacaggtgaaggatttccctctgctcatgtttttttgct |
9335895 |
T |
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| Q |
142 |
gaaaat---tttcatttatctaaaagggaacttgtattagaggacttttagtggtggttcttaacgggtagaaggtatgattctcattttatagtttttt |
238 |
Q |
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| T |
9335896 |
gaaaataattctcacttatctaaaagggaacttgtataagag-------agtggtggttcttaacaggtagaaggtatgattctcattatatagtttt-- |
9335986 |
T |
|
| Q |
239 |
atagagtagtgatacatatacaaccatttgtgacttttccaacaaatacttttccatacacactaccctcgattaatggttaagac---attcaaatatc |
335 |
Q |
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| T |
9335987 |
atagagtagtgatacatgtacaaccatttgtgacatctccaacaaatatttttccatacacactaccctcgatcaatagttaaaacagtactcaaatatc |
9336086 |
T |
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| Q |
336 |
tatgttggtgactcattctaccattttggt |
365 |
Q |
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| T |
9336087 |
ta---tggtgactcattctaacattttggt |
9336113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 42 - 238
Target Start/End: Original strand, 9359534 - 9359733
Alignment:
| Q |
42 |
agtaacacagtaaccaccgtcacaatttggaggaagcataaaagtgatattgattctgcataaccggtgaaggatttccctctgctcatgnnnnnnngct |
141 |
Q |
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| T |
9359534 |
agtaacacagtaaccaccttcacaatttggaggaagcttaaaagtgatattgattcctcataacaggtgaaggatttccctctgctcatgtttttttgct |
9359633 |
T |
|
| Q |
142 |
gaaaat---tttcatttatctaaaagggaacttgtattagaggacttttagtggtggttcttaacgggtagaaggtatgattctcattttatagtttttt |
238 |
Q |
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| T |
9359634 |
gaaaataattttcacttatctaaaagggaacttgtataagaggacttttagtggtggttcttaacaggtagaaggtatgatgctcattttatagtttttt |
9359733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 233 - 379
Target Start/End: Original strand, 9362909 - 9363055
Alignment:
| Q |
233 |
ttttttatagagtagtgatacatatacaaccatttgtgacttttccaacaaatacttttccatacacactaccctcgattaatggttaagacattcaaat |
332 |
Q |
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| T |
9362909 |
ttttttatagagtagtgatatatgtacaaccatttgtgacttctccaacaaatatttttccatacacactaccctcgattaataattaagacactcaaat |
9363008 |
T |
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| Q |
333 |
atctatgttggtgactcattctaccattttggtcttgcaagtataat |
379 |
Q |
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| T |
9363009 |
atctatgttggtgactcattctaccatttgggtcttgtaagtttaat |
9363055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 42 - 131
Target Start/End: Complemental strand, 9244932 - 9244843
Alignment:
| Q |
42 |
agtaacacagtaaccaccgtcacaatttggaggaagcataaaagtgatattgattctgcataaccggtgaaggatttccctctgctcatg |
131 |
Q |
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|||| ||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||| || |||||||||||||||||||||| |
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| T |
9244932 |
agtagcacagcaaccaccgtcacaatttggaggaagcttaaaagtgatattgattccgcataacaggagaaggatttccctctgctcatg |
9244843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 97
Target Start/End: Complemental strand, 15912651 - 15912617
Alignment:
| Q |
63 |
acaatttggaggaagcataaaagtgatattgattc |
97 |
Q |
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| T |
15912651 |
acaatttggaggaagcatacaagtgatattgattc |
15912617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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