View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6278_low_1 (Length: 603)
Name: NF6278_low_1
Description: NF6278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6278_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 15 - 470
Target Start/End: Original strand, 30778639 - 30779094
Alignment:
| Q |
15 |
gagatgaacgtggaaggcgcgtagaattgcgagtgcgcttttgcagtcttcgaagattggtcgaaccacgcgcaggcttgtgaagtatatcaccacgcgc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30778639 |
gagatgaacgtggaaggcgcgtagaattgcgagtgcgcttttgcagtcttcgaagattggtcgaaccacgcgcaggcttgtgaagtatatcaccacgcgc |
30778738 |
T |
|
| Q |
115 |
tgttctgttcccggaaaataaatgggttttgggggtgaaggtggtggagtttgtttttccggcgcgtgtgtgtcattgtttggtgggttttcgggttgag |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30778739 |
tgttctgttcccggaaaataaatgggttttgggggtgaaggtggtggagtttgtttttccagcgcgtgtgtgtcattgtttggtgggttttcgggttgag |
30778838 |
T |
|
| Q |
215 |
agatggagcgtgggagtttgaggggagatgaccaggcacggaggagagtgttggcgagaaggacgcgttggaagacttgttttgttgtgggttgtgaaga |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30778839 |
agatggagcgtgggagtttgaggggagatgaccaggcacggaggagtgtgttggcgagaaggacgcgttggaagacttgttttgttgtgggttgtgaaga |
30778938 |
T |
|
| Q |
315 |
aggtagaggttgttgaggtggttcttgaagaattagggtttgaatgtctttgaaggaagaacaagagaatgaggatgaagaagatttgttgtgaatctta |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30778939 |
aggtagaggttgttgaggtggttcttgaagaattagggtttgaatgtctttgaaggaagaacaagagaatgaggatgaagaagatttgttgtgaatctta |
30779038 |
T |
|
| Q |
415 |
gatgttgattttccccacggtttccacattgaatgtgggagattgaaagttactac |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30779039 |
gatgttgattttccccacggtttccacattgaatgtgggagattgaaagttactac |
30779094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 549 - 587
Target Start/End: Original strand, 30779176 - 30779214
Alignment:
| Q |
549 |
gggaaatgagaaatgggtttagagaaagggatgtttttt |
587 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30779176 |
gggaaatgagaaatgggtttagagaaagggatgtttttt |
30779214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University