View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6278_low_3 (Length: 427)
Name: NF6278_low_3
Description: NF6278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6278_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 371
Target Start/End: Complemental strand, 3526840 - 3526478
Alignment:
| Q |
11 |
agagaagaaaataagttaaaaacaaaagacaaagcgtttatcatcataagtttctatgtatatgttatttctataagaacttataaatattattcattcg |
110 |
Q |
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| T |
3526840 |
agagaagaaaataagttaaaaacacaagacaaagcgtttatcatcttaagtttctatgtatatgttatttctagaagaacttataaatattattcattcg |
3526741 |
T |
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| Q |
111 |
atcagctaactttgaggaacctgaataaatctaatgagtgtttgattttttcccccggattttgttgaacaaatcttacactagacaagcaaatggcaaa |
210 |
Q |
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| T |
3526740 |
atcagctaactgtgaggaaccttaataaatctaatgagtgtttgattttttcccccagattttgttgaacaaatcttacactagacaaacaaatggcaaa |
3526641 |
T |
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| Q |
211 |
gtgcacacacaaaaccctttatagtaactaatcaattaaataaaaccattaaattatttttaaaccactactaatcaat--aagtgaacacataaaaaac |
308 |
Q |
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| T |
3526640 |
gtgcacacataaaaccctttatagtaactaatcaattaaataaaaccattaaattatttttaaaccactactaaacaattaaagtgaacacataaaaaac |
3526541 |
T |
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| Q |
309 |
cctttaaagtacacacaagaatatcacgtttgtcacggtaaatatttttgtagaagctagaag |
371 |
Q |
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| T |
3526540 |
cctttaaagtacacacaagaatatcacgtttgtcacggtaaatatttttgtagaagctagaag |
3526478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 102 - 250
Target Start/End: Complemental strand, 3526265 - 3526115
Alignment:
| Q |
102 |
attcattcgatcagctaactttgaggaacctgaataaatctaatgagtgtttgattttttccc--ccggattttgttgaacaaatcttacactagacaag |
199 |
Q |
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| T |
3526265 |
attcattggatcagttaactgtgaggaaccttaatagatctagtgagtgtatgattttttttcttccagattttgttgaacaaatcttacactaggcaaa |
3526166 |
T |
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| Q |
200 |
caaatggcaaagtgcacacacaaaaccctttatagtaactaatcaattaaa |
250 |
Q |
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| T |
3526165 |
caaatgacaaagtgcacgcataaaaccctttatagtaactaatcaattaaa |
3526115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 359
Target Start/End: Complemental strand, 3525827 - 3525768
Alignment:
| Q |
302 |
aaaaaaccctttaaagtacacacaagaatatcac--gtttgtcacggtaaatatttttgt |
359 |
Q |
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| T |
3525827 |
aaaaaaccctttaaagtgcacacaagaatatcacgtgtttgtcactataaatatttttgt |
3525768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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