View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6278_low_5 (Length: 360)
Name: NF6278_low_5
Description: NF6278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6278_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 45200418 - 45200741
Alignment:
| Q |
13 |
tcatcattagtgagaccttctttagtacaattcaattctcgaaacacttcatcaacagggattctctcctgcaaatcaaccacattgctttttaataaca |
112 |
Q |
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| T |
45200418 |
tcatcattagtgagaccttctttagtacaattcaattctcgaaacacttcatcaacagggattctctcctgcaaatcaaccacattgctttttaataaca |
45200517 |
T |
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| Q |
113 |
acaaaaatgaatgaatatataacttataacatttgtagcatcgacacttctgatcaaatgcatgtatggtgtccaacacatcttagtgtcggacatcaac |
212 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
45200518 |
acaaaaatgaatgaatat--aacttataacatttgtagcatcgacacttctgatcgaatgtatgtatggtgtccaacacatctcagtgtcggacatcaac |
45200615 |
T |
|
| Q |
213 |
accacaccgacaattgattattgttgtcgacatgtcaatgtctgttattcatagattgtaaaaaataaaatgtaacaaactgtgagtttgtcaaaatcac |
312 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||| |
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| T |
45200616 |
accacaccgacaaatgattattgttgtcgacatgtcaatgtctgttattcatagattgtaacaaataaaatgtaacaaacggtgagtttttcaaaatcac |
45200715 |
T |
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| Q |
313 |
ggtgacatcatgattttgttgaagct |
338 |
Q |
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||||||| ||||||||||||||||| |
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| T |
45200716 |
agtgacattatgattttgttgaagct |
45200741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 25635707 - 25635663
Alignment:
| Q |
295 |
tgagtttgtcaaaatcacggtgacatcatgattttgttgaagctt |
339 |
Q |
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| T |
25635707 |
tgagtttggcaaaatcacggtgacattgtgattctgttgaagctt |
25635663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 336
Target Start/End: Original strand, 23585692 - 23585733
Alignment:
| Q |
295 |
tgagtttgtcaaaatcacggtgacatcatgattttgttgaag |
336 |
Q |
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| T |
23585692 |
tgagtttgacaaaatcacagtgacaacatgattttgttgaag |
23585733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 335
Target Start/End: Complemental strand, 27870987 - 27870946
Alignment:
| Q |
294 |
gtgagtttgtcaaaatcacggtgacatcatgattttgttgaa |
335 |
Q |
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| T |
27870987 |
gtgagtttgataaaatcacggtgacaccatgattttgttgaa |
27870946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 338
Target Start/End: Original strand, 7873062 - 7873106
Alignment:
| Q |
294 |
gtgagtttgtcaaaatcacggtgacatcatgattttgttgaagct |
338 |
Q |
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||||||||| ||||| ||||||||| |||||||||||||||||| |
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| T |
7873062 |
gtgagtttgataaaattacggtgacaccatgattttgttgaagct |
7873106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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