View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6278_low_9 (Length: 239)
Name: NF6278_low_9
Description: NF6278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6278_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 8505842 - 8505676
Alignment:
| Q |
20 |
caatcttggttacttattttaatttattcaacaggtggttttgtaaacaagtgatacacacacaaaacagtctcatctaaacagtctcatttgtttatgc |
119 |
Q |
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| T |
8505842 |
caatcttggttacttattttaatttattcaacaggtggttttgtaaacaagtgatacacacacaaaacagtctcatctaaaccgtctcatttgtttatgc |
8505743 |
T |
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| Q |
120 |
cttgctgcacttagcacccacatctaaacagtcgtatttgttaatgttttactttacttgctgcctt |
186 |
Q |
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| T |
8505742 |
cttgctgcacttagcacccacatctaaacagtcgcatttgttaatattttactttacttgctgcctt |
8505676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 51648362 - 51648543
Alignment:
| Q |
20 |
caatcttggttacttattttaatttattcaacaggtggttttgtaaacaagtgatacacacacaaaacagtctcatctaaacagtctcatt--------- |
110 |
Q |
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| T |
51648362 |
caatcttggttacttattttaatttattcaacaggtggttttgtaaacaagtgatacacacacaaaacaatctcatctaaacagtctcatttgtttatgc |
51648461 |
T |
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| Q |
111 |
------tgtttatgccttgctgcacttagcacccacatctaaacagtcgtatttgttaatgttttactttacttgctgcctt |
186 |
Q |
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| T |
51648462 |
cttccgtgtttatgccttgctgcacttagcacccacatctaaacagtctcatttgttaatgttttactttacttgctgcctt |
51648543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 20603721 - 20603902
Alignment:
| Q |
20 |
caatcttggttacttattttaatttattcaacaggtggttttgtaaacaagtgatacacacacaaaacagtctcatctaaacagtctcatt--------- |
110 |
Q |
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| T |
20603721 |
caatcttggttacttattttaatttattcaacaggtggttttgtaaacaagtgatacacacacaaaacagtctcatctaaacagtctcatttgtttatgc |
20603820 |
T |
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| Q |
111 |
------tgtttatgccttgctgcacttagcacccacatctaaacagtcgtatttgttaatgttttactttacttgctgcctt |
186 |
Q |
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| T |
20603821 |
cttccgtgtttatgccttgctgcacttagcacccacatctaaacagtctcatttgttaatgttttactttacttgctgcctt |
20603902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 30848725 - 30848650
Alignment:
| Q |
111 |
tgtttatgccttgctgcacttagcacccacatctaaacagtcgtatttgttaatgttttactttacttgctgcctt |
186 |
Q |
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| T |
30848725 |
tgtttatgccttgctgcacttagcacccacatctaaacagtcttatttgttaatgttttactttacttgctgcctt |
30848650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 13602508 - 13602454
Alignment:
| Q |
20 |
caatcttggttacttattttaatttattcaacaggtggttttgtaaacaagtgat |
74 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13602508 |
caatcttagttacttattttaatttattcaactggtggttttgtaaacaagtgat |
13602454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 149
Target Start/End: Original strand, 13948838 - 13948876
Alignment:
| Q |
111 |
tgtttatgccttgctgcacttagcacccacatctaaaca |
149 |
Q |
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| T |
13948838 |
tgtttatgccttgctgcacttagaacccacgtctaaaca |
13948876 |
T |
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