View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6280_high_4 (Length: 284)

Name: NF6280_high_4
Description: NF6280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6280_high_4
NF6280_high_4
[»] chr8 (13 HSPs)
chr8 (17-112)||(15115776-15115871)
chr8 (209-259)||(25896993-25897043)
chr8 (208-264)||(36688253-36688309)
chr8 (208-255)||(45515935-45515982)
chr8 (208-264)||(44269373-44269429)
chr8 (208-259)||(20853380-20853431)
chr8 (208-258)||(6807428-6807478)
chr8 (207-257)||(17075016-17075066)
chr8 (207-257)||(17573204-17573254)
chr8 (207-264)||(26823827-26823884)
chr8 (219-264)||(28349563-28349608)
chr8 (209-253)||(41487476-41487520)
chr8 (220-264)||(45177215-45177259)
[»] chr1 (20 HSPs)
chr1 (17-129)||(29438455-29438565)
chr1 (208-264)||(50226394-50226450)
chr1 (208-264)||(3377503-3377559)
chr1 (219-259)||(51250498-51250538)
chr1 (208-254)||(14978799-14978845)
chr1 (219-264)||(32295209-32295254)
chr1 (207-259)||(23891891-23891943)
chr1 (215-259)||(25085651-25085695)
chr1 (208-264)||(45738938-45738994)
chr1 (219-254)||(12960859-12960894)
chr1 (209-264)||(41997643-41997698)
chr1 (210-264)||(6320562-6320616)
chr1 (209-259)||(16874511-16874561)
chr1 (206-256)||(18632317-18632367)
chr1 (208-254)||(46039147-46039193)
chr1 (219-253)||(49426257-49426291)
chr1 (209-254)||(12961110-12961155)
chr1 (209-253)||(17692730-17692774)
chr1 (220-264)||(17760696-17760740)
chr1 (219-259)||(44672328-44672368)
[»] chr7 (19 HSPs)
chr7 (43-129)||(16353304-16353388)
chr7 (209-264)||(18186708-18186763)
chr7 (210-264)||(21505873-21505927)
chr7 (209-254)||(6792062-6792107)
chr7 (208-264)||(28472392-28472447)
chr7 (209-264)||(20505101-20505156)
chr7 (208-259)||(33159486-33159537)
chr7 (207-253)||(11742711-11742757)
chr7 (209-259)||(32043505-32043555)
chr7 (209-259)||(36204442-36204492)
chr7 (208-254)||(36903533-36903579)
chr7 (207-253)||(47909695-47909741)
chr7 (226-259)||(15029081-15029114)
chr7 (208-253)||(41243646-41243691)
chr7 (208-256)||(10097789-10097837)
chr7 (226-254)||(12905792-12905820)
chr7 (219-259)||(15347967-15348007)
chr7 (219-259)||(37991428-37991468)
chr7 (225-253)||(42256602-42256630)
[»] chr4 (27 HSPs)
chr4 (208-259)||(21871645-21871696)
chr4 (208-259)||(21927506-21927557)
chr4 (208-264)||(53312288-53312344)
chr4 (208-259)||(43074827-43074878)
chr4 (210-264)||(14060760-14060814)
chr4 (206-254)||(1420535-1420583)
chr4 (207-259)||(50073267-50073319)
chr4 (208-259)||(1186660-1186711)
chr4 (208-254)||(21957733-21957779)
chr4 (219-259)||(21957552-21957592)
chr4 (208-264)||(43074618-43074674)
chr4 (219-254)||(2016804-2016839)
chr4 (219-254)||(14449551-14449586)
chr4 (208-259)||(19909175-19909226)
chr4 (209-264)||(27978695-27978750)
chr4 (208-259)||(35615316-35615367)
chr4 (208-259)||(40489213-40489264)
chr4 (219-254)||(52463053-52463088)
chr4 (208-254)||(4796038-4796084)
chr4 (208-254)||(26858346-26858392)
chr4 (208-253)||(10059966-10060011)
chr4 (207-264)||(20118162-20118219)
chr4 (208-253)||(21451461-21451506)
chr4 (219-264)||(51362549-51362594)
chr4 (209-257)||(13306915-13306963)
chr4 (208-264)||(25909489-25909545)
chr4 (208-264)||(54855306-54855362)
[»] chr6 (7 HSPs)
chr6 (210-264)||(20474960-20475014)
chr6 (208-264)||(30349612-30349668)
chr6 (208-255)||(17248638-17248685)
chr6 (208-254)||(2203189-2203235)
chr6 (210-264)||(10727450-10727504)
chr6 (226-255)||(32143277-32143306)
chr6 (208-264)||(30349351-30349407)
[»] chr5 (18 HSPs)
chr5 (208-264)||(37897973-37898029)
chr5 (208-259)||(12406301-12406352)
chr5 (208-264)||(27904739-27904795)
chr5 (209-256)||(24405493-24405540)
chr5 (209-259)||(19340767-19340817)
chr5 (208-254)||(36798442-36798488)
chr5 (209-259)||(40133140-40133190)
chr5 (219-264)||(3333957-3334002)
chr5 (208-257)||(40132906-40132955)
chr5 (208-264)||(12406043-12406099)
chr5 (208-259)||(12610246-12610297)
chr5 (216-259)||(21066385-21066428)
chr5 (219-257)||(31080490-31080528)
chr5 (209-254)||(8284158-8284203)
chr5 (209-254)||(10169018-10169063)
chr5 (208-261)||(39573784-39573837)
chr5 (208-253)||(41138563-41138608)
chr5 (208-253)||(43098291-43098336)
[»] chr2 (14 HSPs)
chr2 (208-264)||(6592726-6592782)
chr2 (208-254)||(19399184-19399230)
chr2 (208-254)||(19399441-19399487)
chr2 (208-254)||(34679099-34679145)
chr2 (219-264)||(39918447-39918492)
chr2 (208-264)||(5362177-5362233)
chr2 (208-264)||(25375129-25375185)
chr2 (208-264)||(43028796-43028852)
chr2 (208-254)||(36715560-36715606)
chr2 (208-257)||(31827794-31827843)
chr2 (216-257)||(37803395-37803436)
chr2 (207-255)||(4094823-4094871)
chr2 (208-264)||(21358361-21358417)
chr2 (208-264)||(21361883-21361938)
[»] chr3 (14 HSPs)
chr3 (219-254)||(29512560-29512595)
chr3 (209-254)||(86578-86623)
chr3 (209-254)||(7218421-7218466)
chr3 (207-264)||(22494554-22494611)
chr3 (208-264)||(38177180-38177236)
chr3 (208-264)||(51315740-51315796)
chr3 (219-254)||(25902619-25902654)
chr3 (209-264)||(44586042-44586097)
chr3 (208-254)||(54719261-54719307)
chr3 (219-259)||(578672-578712)
chr3 (229-257)||(14340996-14341024)
chr3 (209-257)||(27178410-27178458)
chr3 (208-264)||(33329613-33329669)
chr3 (208-252)||(44433334-44433378)
[»] scaffold0025 (1 HSPs)
scaffold0025 (209-259)||(19602-19652)
[»] scaffold0515 (1 HSPs)
scaffold0515 (208-264)||(3641-3697)
[»] scaffold0306 (1 HSPs)
scaffold0306 (208-264)||(3641-3697)
[»] scaffold0809 (1 HSPs)
scaffold0809 (209-258)||(3019-3068)
[»] scaffold0372 (1 HSPs)
scaffold0372 (208-253)||(126-171)
[»] scaffold0011 (1 HSPs)
scaffold0011 (219-264)||(145366-145411)
[»] scaffold1458 (1 HSPs)
scaffold1458 (208-264)||(1473-1529)
[»] scaffold0248 (1 HSPs)
scaffold0248 (220-264)||(416-460)


Alignment Details
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 15115776 - 15115871
Alignment:
Q  17 caaaatagatctcaacatgtatatgtatatatatttggggatcaattttttattcaagcaatattattttttaaataactgaaatattactttgga 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15115776 caaaatagatctcaacatgtatatgtatatatatttggggatcaattttttattcaagcaatattattttttaaataactcaaatattactttgga 15115871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 25896993 - 25897043
Alignment:
Q  209 ttaattgcaattttagccccctaactttttcaaagttgcgattttgacccc 259  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||| ||||    
T  25896993 ttaatagcagttttagccccctaactttttcaaagttgcgattttggcccc 25897043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 36688309 - 36688253
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||| ||| ||||| |||||||||||||||||||||| |||||||||||| ||||    
T  36688309 cttaatagcagttttaaccccctaactttttcaaagttgtgattttgaccccctaag 36688253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 45515935 - 45515982
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttga 255  Q
    |||||||||| |||||||||| ||| ||||||||||||||||||||||    
T  45515935 cttaattgcagttttagccccttaattttttcaaagttgcgattttga 45515982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 44269429 - 44269373
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||| | ||||||| |||||||| ||| |||||||||||||||||||||| ||||    
T  44269429 cttaatagtaattttaaccccctaattttctcaaagttgcgattttgaccccctaag 44269373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 259
Target Start/End: Original strand, 20853380 - 20853431
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgacccc 259  Q
    |||||| ||| |||||||||||||||||| |  |||||||||||||||||||    
T  20853380 cttaatagcagttttagccccctaactttcttgaagttgcgattttgacccc 20853431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 258
Target Start/End: Complemental strand, 6807478 - 6807428
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccc 258  Q
    |||||| |||||||||| |||||||||||  ||||||||| ||||||||||    
T  6807478 cttaatagcaattttagtcccctaactttcccaaagttgcaattttgaccc 6807428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 17075066 - 17075016
Alignment:
Q  207 acttaattgcaattttagccccctaactttttcaaagttgcgattttgacc 257  Q
    ||||||||||| ||||  ||||||| |||||| ||||||||||||||||||    
T  17075066 acttaattgcacttttgaccccctatctttttaaaagttgcgattttgacc 17075016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 17573204 - 17573254
Alignment:
Q  207 acttaattgcaattttagccccctaactttttcaaagttgcgattttgacc 257  Q
    ||||||||||| ||||  ||||||| |||||| ||||||||||||||||||    
T  17573204 acttaattgcacttttgaccccctatctttttaaaagttgcgattttgacc 17573254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 264
Target Start/End: Original strand, 26823827 - 26823884
Alignment:
Q  207 acttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    ||||||| ||| ||||| ||| |||||||| |||||||| ||||||||||||| ||||    
T  26823827 acttaatagcagttttaaccctctaactttctcaaagttacgattttgaccccttaag 26823884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 28349608 - 28349563
Alignment:
Q  219 ttttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    ||||||||||||||||||  |||||||||||||||| |||| ||||    
T  28349608 ttttagccccctaactttcccaaagttgcgattttggccccctaag 28349563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 41487520 - 41487476
Alignment:
Q  209 ttaattgcaattttagccccctaactttttcaaagttgcgatttt 253  Q
    ||||| ||| ||||||||| ||||||||| |||||||||||||||    
T  41487520 ttaatagcagttttagccctctaacttttccaaagttgcgatttt 41487476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 45177215 - 45177259
Alignment:
Q  220 tttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    ||||||| ||||||||| |||||||||||||||||| ||| ||||    
T  45177215 tttagcctcctaactttctcaaagttgcgattttgatcccctaag 45177259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 29438565 - 29438455
Alignment:
Q  17 caaaatagatctcaacatgtatatgtatatatatttggggatcaattttttattcaagcaatattattttttaaataactgaaatattactttggatcaa 116  Q
    |||||||| | | |||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| | |||    
T  29438565 caaaataggttttaacatgtatatgtatatat--ttggggatcaattttttattcaagcagtattattttttaaataactcaaatattactttgtaccaa 29438468  T
Q  117 ataaatttatact 129  Q
    |||||||||||||    
T  29438467 ataaatttatact 29438455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 50226394 - 50226450
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    ||||||| || |||||||||||||||||||||||||||||||||||| |||| ||||    
T  50226394 cttaattacagttttagccccctaactttttcaaagttgcgattttggccccctaag 50226450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 3377503 - 3377559
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||| ||| ||||||||||||||||||| |||||||||||||||| |||| ||||    
T  3377503 cttaatagcagttttagccccctaacttttccaaagttgcgattttggccccctaag 3377559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 51250498 - 51250538
Alignment:
Q  219 ttttagccccctaactttttcaaagttgcgattttgacccc 259  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  51250498 ttttagccccctaactttttcaaagttgcgattttggcccc 51250538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 14978799 - 14978845
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttg 254  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||||||    
T  14978799 cttaatagcagttttagccccctaacttttccaaagttgcgattttg 14978845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 32295254 - 32295209
Alignment:
Q  219 ttttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    ||||||||||  ||||||||||||||||||||||||||||| ||||    
T  32295254 ttttagcccctaaactttttcaaagttgcgattttgaccccctaag 32295209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 23891943 - 23891891
Alignment:
Q  207 acttaattgcaattttagccccctaactttttcaaagttgcgattttgacccc 259  Q
    ||||||| ||| |||||| ||||||||||||||||| || |||||||||||||    
T  23891943 acttaatagcagttttagtcccctaactttttcaaaattacgattttgacccc 23891891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 25085695 - 25085651
Alignment:
Q  215 gcaattttagccccctaactttttcaaagttgcgattttgacccc 259  Q
    ||||||||||||||||||||||| |||||||| ||||||| ||||    
T  25085695 gcaattttagccccctaacttttccaaagttgtgattttggcccc 25085651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 45738938 - 45738994
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||| ||||||||| | |||||||||| ||||||||| |||||||||||| ||||    
T  45738938 cttaatagcaattttaactccctaactttctcaaagttgtgattttgaccccctaag 45738994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 254
Target Start/End: Original strand, 12960859 - 12960894
Alignment:
Q  219 ttttagccccctaactttttcaaagttgcgattttg 254  Q
    ||||||||| ||||||||||||||||||||||||||    
T  12960859 ttttagcccgctaactttttcaaagttgcgattttg 12960894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 41997643 - 41997698
Alignment:
Q  209 ttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    ||||| |||||||| ||||||||| |||  |||||||||||||||| |||||||||    
T  41997643 ttaatagcaatttttgccccctaattttcacaaagttgcgattttggccccataag 41997698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 6320562 - 6320616
Alignment:
Q  210 taattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||||| ||||||||| |||||||||  ||||||||||||||| |||| ||||    
T  6320562 taattgcagttttagccctctaacttttctaaagttgcgattttggccccttaag 6320616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 16874511 - 16874561
Alignment:
Q  209 ttaattgcaattttagccccctaactttttcaaagttgcgattttgacccc 259  Q
    ||||| |||||||| |||||||||||||| | ||||||||||| |||||||    
T  16874511 ttaatagcaattttcgccccctaacttttacgaagttgcgattatgacccc 16874561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 256
Target Start/End: Original strand, 18632317 - 18632367
Alignment:
Q  206 aacttaattgcaattttagccccctaactttttcaaagttgcgattttgac 256  Q
    |||||||||||| |||||| ||| |||||||  ||||||||||||||||||    
T  18632317 aacttaattgcagttttagtcccttaactttcacaaagttgcgattttgac 18632367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 46039193 - 46039147
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttg 254  Q
    |||||||||| |||| |||||||| |||||| |||||||||||||||    
T  46039193 cttaattgcacttttggccccctatctttttaaaagttgcgattttg 46039147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 253
Target Start/End: Complemental strand, 49426291 - 49426257
Alignment:
Q  219 ttttagccccctaactttttcaaagttgcgatttt 253  Q
    ||||||||||||||||||| |||||||||||||||    
T  49426291 ttttagccccctaacttttccaaagttgcgatttt 49426257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 12961155 - 12961110
Alignment:
Q  209 ttaattgcaattttagccccctaactttttcaaagttgcgattttg 254  Q
    ||||| ||| |||||||| ||||| |||||||||||||||||||||    
T  12961155 ttaatagcagttttagcctcctaattttttcaaagttgcgattttg 12961110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 17692730 - 17692774
Alignment:
Q  209 ttaattgcaattttagccccctaactttttcaaagttgcgatttt 253  Q
    ||||| ||||||||| |||||||||||| ||||||||| ||||||    
T  17692730 ttaatagcaattttaaccccctaactttctcaaagttgtgatttt 17692774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 17760696 - 17760740
Alignment:
Q  220 tttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    ||||||||||||||||  ||||||||||||||||| |||| ||||    
T  17760696 tttagccccctaacttcctcaaagttgcgattttggccccctaag 17760740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 44672328 - 44672368
Alignment:
Q  219 ttttagccccctaactttttcaaagttgcgattttgacccc 259  Q
    |||||||| ||||||||| ||||||||| ||||||||||||    
T  44672328 ttttagcctcctaactttctcaaagttgtgattttgacccc 44672368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 16353388 - 16353304
Alignment:
Q  43 atatatatttggggatcaattttttattcaagcaatattattttttaaataactgaaatattactttggatcaaataaatttatact 129  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||  ||||| | ||| ||||||||||||    
T  16353388 atatatatttgggggtcaattttttattcaagcagtattattttttaaataactcaaatat--ctttgtaccaattaaatttatact 16353304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 18186763 - 18186708
Alignment:
Q  209 ttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    ||||| ||| ||||||||||||||||||| ||||||| ||||||||||||| ||||    
T  18186763 ttaatagcagttttagccccctaacttttccaaagttacgattttgaccccctaag 18186708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 21505927 - 21505873
Alignment:
Q  210 taattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||| ||| |||||| ||||||||||||||||||||||||||||| |||| ||||    
T  21505927 taatagcagttttagtcccctaactttttcaaagttgcgattttggccccctaag 21505873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 6792107 - 6792062
Alignment:
Q  209 ttaattgcaattttagccccctaactttttcaaagttgcgattttg 254  Q
    ||||| ||| ||||||||||||||||||| ||||||||||||||||    
T  6792107 ttaatagcagttttagccccctaacttttccaaagttgcgattttg 6792062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 28472392 - 28472447
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||| ||| |||||||||| |||||||| ||||||||||||||||||||| ||||    
T  28472392 cttaatagcagttttagcccc-taacttttccaaagttgcgattttgaccccctaag 28472447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 20505101 - 20505156
Alignment:
Q  209 ttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    ||||| ||| |||||||||||||||||| |||||||||||| |||| |||| ||||    
T  20505101 ttaatagcagttttagccccctaactttctcaaagttgcgactttggccccctaag 20505156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 259
Target Start/End: Original strand, 33159486 - 33159537
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgacccc 259  Q
    |||||||||| ||||| ||||||| |||||| ||||||||||||||| ||||    
T  33159486 cttaattgcacttttaaccccctatctttttaaaagttgcgattttggcccc 33159537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 11742711 - 11742757
Alignment:
Q  207 acttaattgcaattttagccccctaactttttcaaagttgcgatttt 253  Q
    ||||||||||| |||| |||||||| |||||| ||||||||||||||    
T  11742711 acttaattgcacttttggccccctatctttttaaaagttgcgatttt 11742757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 32043505 - 32043555
Alignment:
Q  209 ttaattgcaattttagccccctaactttttcaaagttgcgattttgacccc 259  Q
    ||||||||| ||||||||||||| |||||| ||| |||| |||||||||||    
T  32043505 ttaattgcacttttagccccctatctttttaaaaattgcaattttgacccc 32043555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 36204492 - 36204442
Alignment:
Q  209 ttaattgcaattttagccccctaactttttcaaagttgcgattttgacccc 259  Q
    ||||||||| |||| |||||||| |||||  ||||||||||||||||||||    
T  36204492 ttaattgcacttttggccccctatcttttcaaaagttgcgattttgacccc 36204442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 36903579 - 36903533
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttg 254  Q
    |||||| ||| ||||| ||||||||||||||||| ||||||||||||    
T  36903579 cttaatagcagttttaaccccctaactttttcaatgttgcgattttg 36903533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 47909695 - 47909741
Alignment:
Q  207 acttaattgcaattttagccccctaactttttcaaagttgcgatttt 253  Q
    ||||||| ||| ||||||||||||||||||  |||||||||||||||    
T  47909695 acttaatagcagttttagccccctaactttcccaaagttgcgatttt 47909741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 259
Target Start/End: Original strand, 15029081 - 15029114
Alignment:
Q  226 cccctaactttttcaaagttgcgattttgacccc 259  Q
    |||||||||||| |||||||||||||||||||||    
T  15029081 cccctaacttttccaaagttgcgattttgacccc 15029114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 41243646 - 41243691
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgatttt 253  Q
    |||||| ||| ||||||||||||||||||| ||||||||| |||||    
T  41243646 cttaatagcagttttagccccctaacttttccaaagttgcaatttt 41243691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 10097837 - 10097789
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgac 256  Q
    |||||| ||||||||||||   ||||||| |||||||||||||||||||    
T  10097837 cttaatagcaattttagccatttaactttctcaaagttgcgattttgac 10097789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 254
Target Start/End: Complemental strand, 12905820 - 12905792
Alignment:
Q  226 cccctaactttttcaaagttgcgattttg 254  Q
    |||||||||||||||||||||||||||||    
T  12905820 cccctaactttttcaaagttgcgattttg 12905792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 15347967 - 15348007
Alignment:
Q  219 ttttagccccctaactttttcaaagttgcgattttgacccc 259  Q
    ||||||||||||||||||   ||||||||||||||||||||    
T  15347967 ttttagccccctaactttcctaaagttgcgattttgacccc 15348007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 37991428 - 37991468
Alignment:
Q  219 ttttagccccctaactttttcaaagttgcgattttgacccc 259  Q
    |||| |||||||| |||||| ||||||||||||||||||||    
T  37991428 ttttggccccctatctttttaaaagttgcgattttgacccc 37991468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 253
Target Start/End: Original strand, 42256602 - 42256630
Alignment:
Q  225 ccccctaactttttcaaagttgcgatttt 253  Q
    |||||||||||||||||||||||||||||    
T  42256602 ccccctaactttttcaaagttgcgatttt 42256630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 259
Target Start/End: Complemental strand, 21871696 - 21871645
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgacccc 259  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21871696 cttaatagcaattttagccccctaactttttcaaagttgcgattttgacccc 21871645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 259
Target Start/End: Complemental strand, 21927557 - 21927506
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgacccc 259  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21927557 cttaatagcaattttagccccctaactttttcaaagttgcgattttgacccc 21927506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 53312288 - 53312344
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||| |||| ||||    
T  53312288 cttaatagcatttttagccccctaactttttcaaagttgcgattttggccccctaag 53312344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 259
Target Start/End: Complemental strand, 43074878 - 43074827
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgacccc 259  Q
    |||||| ||||||||||||||||||||||  |||||||||||||||||||||    
T  43074878 cttaatagcaattttagccccctaactttcccaaagttgcgattttgacccc 43074827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 14060760 - 14060814
Alignment:
Q  210 taattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||||||| ||||    
T  14060760 taatagcagttttaaccccctaactttttcaaagttgcgattttgaccccctaag 14060814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 1420535 - 1420583
Alignment:
Q  206 aacttaattgcaattttagccccctaactttttcaaagttgcgattttg 254  Q
    |||||||| ||| ||||||||||||||||||| ||||||||||||||||    
T  1420535 aacttaatagcagttttagccccctaacttttccaaagttgcgattttg 1420583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 50073267 - 50073319
Alignment:
Q  207 acttaattgcaattttagccccctaactttttcaaagttgcgattttgacccc 259  Q
    ||||||||||| |||| |||||||| |||||| ||||||||||||||||||||    
T  50073267 acttaattgcacttttggccccctatcttttttaaagttgcgattttgacccc 50073319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 259
Target Start/End: Original strand, 1186660 - 1186711
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgacccc 259  Q
    |||||||||| |||| ||||||||||||||| ||||||||||||||| ||||    
T  1186660 cttaattgcacttttggccccctaactttttaaaagttgcgattttggcccc 1186711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 21957779 - 21957733
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttg 254  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||||||    
T  21957779 cttaatagcagttttagccccctaacttttccaaagttgcgattttg 21957733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 21957552 - 21957592
Alignment:
Q  219 ttttagccccctaactttttcaaagttgcgattttgacccc 259  Q
    ||||||| |||||||||| ||||||||||||||||||||||    
T  21957552 ttttagctccctaactttctcaaagttgcgattttgacccc 21957592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 43074618 - 43074674
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||| |||||||| |||||||||||||  | |||||||||||||| |||||||||    
T  43074618 cttaatagcaattttcgccccctaactttcacgaagttgcgattttggccccataag 43074674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 254
Target Start/End: Original strand, 2016804 - 2016839
Alignment:
Q  219 ttttagccccctaactttttcaaagttgcgattttg 254  Q
    ||||||||||||||||||| ||||||||||||||||    
T  2016804 ttttagccccctaacttttccaaagttgcgattttg 2016839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 254
Target Start/End: Complemental strand, 14449586 - 14449551
Alignment:
Q  219 ttttagccccctaactttttcaaagttgcgattttg 254  Q
    ||||||||||||||||||| ||||||||||||||||    
T  14449586 ttttagccccctaacttttccaaagttgcgattttg 14449551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 259
Target Start/End: Original strand, 19909175 - 19909226
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgacccc 259  Q
    |||||| ||| ||||| |||||||||||| ||||||||||||||||| ||||    
T  19909175 cttaatagcagttttaaccccctaactttctcaaagttgcgattttggcccc 19909226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 27978695 - 27978750
Alignment:
Q  209 ttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    ||||| ||| ||| ||||| |||||||| |||||||||||||||||||||| ||||    
T  27978695 ttaatagcagtttaagccctctaactttctcaaagttgcgattttgaccccctaag 27978750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 259
Target Start/End: Original strand, 35615316 - 35615367
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgacccc 259  Q
    |||||| ||| |||||||||||||||||||  ||||||||||||||| ||||    
T  35615316 cttaatagcagttttagccccctaacttttctaaagttgcgattttggcccc 35615367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 259
Target Start/End: Original strand, 40489213 - 40489264
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgacccc 259  Q
    |||||||||| ||||||||||||| |||| | ||||||||||||||| ||||    
T  40489213 cttaattgcacttttagccccctatctttctaaaagttgcgattttggcccc 40489264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 254
Target Start/End: Complemental strand, 52463088 - 52463053
Alignment:
Q  219 ttttagccccctaactttttcaaagttgcgattttg 254  Q
    |||||||||||||| |||||||||||||||||||||    
T  52463088 ttttagccccctaattttttcaaagttgcgattttg 52463053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 4796038 - 4796084
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttg 254  Q
    |||||| ||| |||||| ||||||||||||||||| |||||||||||    
T  4796038 cttaatagcatttttagtcccctaactttttcaaaattgcgattttg 4796084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 26858346 - 26858392
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttg 254  Q
    |||||||||| |||| |||||||| |||||| |||||||||||||||    
T  26858346 cttaattgcacttttggccccctatctttttaaaagttgcgattttg 26858392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 10060011 - 10059966
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgatttt 253  Q
    |||||| ||| |||||| ||||||| ||||||||||||||||||||    
T  10060011 cttaatagcagttttagacccctaattttttcaaagttgcgatttt 10059966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 264
Target Start/End: Complemental strand, 20118219 - 20118162
Alignment:
Q  207 acttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    ||||||| |||||||||||||| ||||||||  ||||||| ||||||| |||| ||||    
T  20118219 acttaatagcaattttagccccttaacttttataaagttgtgattttggccccttaag 20118162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 21451461 - 21451506
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgatttt 253  Q
    |||||| ||| |||||||| ||||||||| ||||||||||||||||    
T  21451461 cttaatagcagttttagcctcctaactttctcaaagttgcgatttt 21451506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 51362549 - 51362594
Alignment:
Q  219 ttttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||||||||||||||||  ||||||||||||||| |||| ||||    
T  51362549 ttttagccccctaacttttctaaagttgcgattttggccccctaag 51362594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 13306963 - 13306915
Alignment:
Q  209 ttaattgcaattttagccccctaactttttcaaagttgcgattttgacc 257  Q
    ||||||||| |||| |||||||| |||||  ||||||||||||||||||    
T  13306963 ttaattgcacttttggccccctatcttttcaaaagttgcgattttgacc 13306915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 25909489 - 25909545
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||| ||| ||||| ||||||||||||| |||||||| ||||||| |||| ||||    
T  25909489 cttaatagcagttttaaccccctaacttttccaaagttgtgattttggccccctaag 25909545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 54855306 - 54855362
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||| ||| ||||| || ||||||||| |||||| ||||||||||||| ||||||    
T  54855306 cttaatagcagttttaaccacctaactttctcaaagctgcgattttgacctcataag 54855362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 20475014 - 20474960
Alignment:
Q  210 taattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  20475014 taatagcaattttagccccctaactttttcaaagttgcgattttgatcccttaag 20474960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 30349668 - 30349612
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||| ||| |||| | ||||||||||||||||||||||||||||| |||| ||||    
T  30349668 cttaatagcagtttttgtcccctaactttttcaaagttgcgattttggccccctaag 30349612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 17248638 - 17248685
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttga 255  Q
    |||||| ||| |||||||| ||||||||||| ||||||||||||||||    
T  17248638 cttaatagcagttttagcctcctaacttttttaaagttgcgattttga 17248685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 2203189 - 2203235
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttg 254  Q
    |||||| ||||||||||| ||||||||||  ||||||||||||||||    
T  2203189 cttaatagcaattttagctccctaactttcccaaagttgcgattttg 2203235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 10727504 - 10727450
Alignment:
Q  210 taattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||| ||| ||||||||||||||||||| |||||||| ||||||| |||| ||||    
T  10727504 taatagcagttttagccccctaacttttccaaagttgtgattttggccccctaag 10727450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 255
Target Start/End: Original strand, 32143277 - 32143306
Alignment:
Q  226 cccctaactttttcaaagttgcgattttga 255  Q
    ||||||||||||||||||||||||||||||    
T  32143277 cccctaactttttcaaagttgcgattttga 32143306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 30349351 - 30349407
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||| ||| ||||||||| ||||||||  ||||||||||||||||| ||| ||||    
T  30349351 cttaatagcagttttagccctctaactttcccaaagttgcgattttgagcccctaag 30349407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 37898029 - 37897973
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||| |||| ||||    
T  37898029 cttaatagcagttttagccccctaactttttcaaagttgcgattttggccccctaag 37897973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 259
Target Start/End: Complemental strand, 12406352 - 12406301
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgacccc 259  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||| ||||    
T  12406352 cttaatagcaattttagccccctaactttttcaaagttgagattttggcccc 12406301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 27904795 - 27904739
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||| ||| ||||||||| |||||||||||||||||||||||||| |||| ||||    
T  27904795 cttaatagcagttttagccctctaactttttcaaagttgcgattttggccccgtaag 27904739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 256
Target Start/End: Original strand, 24405493 - 24405540
Alignment:
Q  209 ttaattgcaattttagccccctaactttttcaaagttgcgattttgac 256  Q
    ||||| ||| |||||| |||||||||||||||||||||||||||||||    
T  24405493 ttaatagcagttttagtcccctaactttttcaaagttgcgattttgac 24405540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 19340767 - 19340817
Alignment:
Q  209 ttaattgcaattttagccccctaactttttcaaagttgcgattttgacccc 259  Q
    ||||| ||| ||||||||||||||||||| |||| ||||||||||||||||    
T  19340767 ttaatagcagttttagccccctaacttttccaaaattgcgattttgacccc 19340817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 36798488 - 36798442
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttg 254  Q
    |||||| ||| |||||||||||||||||| |||||||||||||||||    
T  36798488 cttaatagcagttttagccccctaactttctcaaagttgcgattttg 36798442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 40133190 - 40133140
Alignment:
Q  209 ttaattgcaattttagccccctaactttttcaaagttgcgattttgacccc 259  Q
    ||||| ||||||||||||||||||||||  |||||||||||||||| ||||    
T  40133190 ttaatagcaattttagccccctaactttcccaaagttgcgattttggcccc 40133140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 3334002 - 3333957
Alignment:
Q  219 ttttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    ||||||||||||||||||| |||||||||||||||| |||| ||||    
T  3334002 ttttagccccctaacttttccaaagttgcgattttggccccctaag 3333957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 40132906 - 40132955
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgacc 257  Q
    |||||| ||| |||||| || |||||||||||||||||||||||||||||    
T  40132906 cttaatagcagttttagtcctctaactttttcaaagttgcgattttgacc 40132955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 12406043 - 12406099
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||| ||| ||||||||||||||||||  |||||||||||||||| |||| ||||    
T  12406043 cttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaag 12406099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 259
Target Start/End: Original strand, 12610246 - 12610297
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgacccc 259  Q
    |||||||||| |||| |||||||| |||||| ||||||||||||||| ||||    
T  12610246 cttaattgcacttttggccccctatctttttaaaagttgcgattttgtcccc 12610297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 21066385 - 21066428
Alignment:
Q  216 caattttagccccctaactttttcaaagttgcgattttgacccc 259  Q
    |||||||||||||||||||||| ||||||| |||||||| ||||    
T  21066385 caattttagccccctaacttttccaaagtttcgattttggcccc 21066428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 257
Target Start/End: Original strand, 31080490 - 31080528
Alignment:
Q  219 ttttagccccctaactttttcaaagttgcgattttgacc 257  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  31080490 ttttagccctctaacttttccaaagttgcgattttgacc 31080528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 8284158 - 8284203
Alignment:
Q  209 ttaattgcaattttagccccctaactttttcaaagttgcgattttg 254  Q
    ||||| ||||||||| |||| |||||||| ||||||||||||||||    
T  8284158 ttaatagcaattttaaccccataacttttccaaagttgcgattttg 8284203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 10169018 - 10169063
Alignment:
Q  209 ttaattgcaattttagccccctaactttttcaaagttgcgattttg 254  Q
    ||||||||| |||| |||||||| |||||| |||||||||||||||    
T  10169018 ttaattgcacttttggccccctatctttttaaaagttgcgattttg 10169063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 39573837 - 39573784
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccat 261  Q
    |||||||||| |||| | |||||| |||||| ||||||||||||||| ||||||    
T  39573837 cttaattgcacttttggtcccctatctttttaaaagttgcgattttggccccat 39573784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 41138563 - 41138608
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgatttt 253  Q
    |||||||||| ||||||||||||| |||| | ||||||||||||||    
T  41138563 cttaattgcacttttagccccctatctttctaaaagttgcgatttt 41138608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 43098336 - 43098291
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgatttt 253  Q
    |||||| ||| |||||| |||||||||||||||||||| |||||||    
T  43098336 cttaatagcagttttagtcccctaactttttcaaagttacgatttt 43098291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 6592726 - 6592782
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  6592726 cttaatagcagttttagccccctaacttttccaaagttgcgattttgaccccctaag 6592782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 19399184 - 19399230
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttg 254  Q
    |||||| |||||||||||| ||||||||| |||||||||||||||||    
T  19399184 cttaatagcaattttagcctcctaactttctcaaagttgcgattttg 19399230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 19399487 - 19399441
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttg 254  Q
    |||||| ||| |||||||||||||||||||||||||||| |||||||    
T  19399487 cttaatagcagttttagccccctaactttttcaaagttgtgattttg 19399441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 34679099 - 34679145
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttg 254  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||||||    
T  34679099 cttaatagcagttttagccccctaacttttccaaagttgcgattttg 34679145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 39918447 - 39918492
Alignment:
Q  219 ttttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||||||||||||||| ||||||||||||||||| |||| ||||    
T  39918447 ttttagccccctaactttctcaaagttgcgattttggccccctaag 39918492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 5362177 - 5362233
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||| | |||||| |||||||||||||  |||||||||||||||| |||||||||    
T  5362177 cttaatagtaattttcgccccctaactttcacaaagttgcgattttggccccataag 5362233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 25375185 - 25375129
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||| ||| |||||||||||||| |||||||| |||||||||||| |||| ||||    
T  25375185 cttaatagcagttttagccccctaattttttcaatgttgcgattttggccccctaag 25375129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 43028796 - 43028852
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||| ||| ||||||||||||||||| | |||||||||||||||| |||| ||||    
T  43028796 cttaatagcagttttagccccctaacttctccaaagttgcgattttggccccctaag 43028852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 36715606 - 36715560
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttg 254  Q
    |||||| ||| ||||||| |||||||||||| |||||||||||||||    
T  36715606 cttaatagcagttttagctccctaacttttttaaagttgcgattttg 36715560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 31827843 - 31827794
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgacc 257  Q
    |||||| |||||||| |||||||||||||| | ||||||||||| |||||    
T  31827843 cttaatagcaattttcgccccctaacttttacgaagttgcgattatgacc 31827794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 37803436 - 37803395
Alignment:
Q  216 caattttagccccctaactttttcaaagttgcgattttgacc 257  Q
    ||||||| |||||||||||||| | |||||||||||||||||    
T  37803436 caattttcgccccctaacttttacgaagttgcgattttgacc 37803395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 4094871 - 4094823
Alignment:
Q  207 acttaattgcaattttagccccctaactttttcaaagttgcgattttga 255  Q
    ||||||||||| |||| |||||||| |||||  ||||||||||||||||    
T  4094871 acttaattgcactttttgccccctatcttttcaaaagttgcgattttga 4094823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 21358417 - 21358361
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||| ||| |||| ||||||||||||| ||||||||| ||||||| |||| ||||    
T  21358417 cttaatagcagtttttgccccctaactttctcaaagttgtgattttggccccctaag 21358361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 21361883 - 21361938
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||| |||||||| ||||| ||||||| ||||||||||||||||| |||| ||||    
T  21361883 cttaatagcaatttttgcccc-taactttatcaaagttgcgattttggccccttaag 21361938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 254
Target Start/End: Original strand, 29512560 - 29512595
Alignment:
Q  219 ttttagccccctaactttttcaaagttgcgattttg 254  Q
    ||||||||||||||||||||||||||||||||||||    
T  29512560 ttttagccccctaactttttcaaagttgcgattttg 29512595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 86578 - 86623
Alignment:
Q  209 ttaattgcaattttagccccctaactttttcaaagttgcgattttg 254  Q
    ||||| |||||||||||||||||||||||| |||||||| ||||||    
T  86578 ttaatagcaattttagccccctaactttttaaaagttgctattttg 86623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 7218466 - 7218421
Alignment:
Q  209 ttaattgcaattttagccccctaactttttcaaagttgcgattttg 254  Q
    ||||| |||||||||||||||||| ||||| |||||||||||||||    
T  7218466 ttaatagcaattttagccccctaatttttttaaagttgcgattttg 7218421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 264
Target Start/End: Original strand, 22494554 - 22494611
Alignment:
Q  207 acttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    ||||||| ||||||||| |||||||| |||| ||||||| ||||||||||||| ||||    
T  22494554 acttaatagcaattttaaccccctaaattttccaaagttacgattttgaccccctaag 22494611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 38177180 - 38177236
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||| |||||||||||||| |||||||  |||||||||||||||| |||| ||||    
T  38177180 cttaatggcaattttagccccttaactttcccaaagttgcgattttggccccctaag 38177236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 51315796 - 51315740
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||| ||| ||||||||||||||||||  |||||||||||||||| |||| ||||    
T  51315796 cttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaag 51315740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 254
Target Start/End: Complemental strand, 25902654 - 25902619
Alignment:
Q  219 ttttagccccctaactttttcaaagttgcgattttg 254  Q
    |||||||||||||||||| |||||||||||||||||    
T  25902654 ttttagccccctaactttctcaaagttgcgattttg 25902619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 44586097 - 44586042
Alignment:
Q  209 ttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    ||||| ||| ||||||||||||||||||  |||||||||||||||| |||| ||||    
T  44586097 ttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaag 44586042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 54719307 - 54719261
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttg 254  Q
    |||||| ||| ||||| ||||||||||| ||||||||||||||||||    
T  54719307 cttaatggcagttttaaccccctaacttattcaaagttgcgattttg 54719261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 578712 - 578672
Alignment:
Q  219 ttttagccccctaactttttcaaagttgcgattttgacccc 259  Q
    |||||||| |||||||||| |||||||||||||||| ||||    
T  578712 ttttagcctcctaacttttccaaagttgcgattttggcccc 578672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Complemental strand, 14341024 - 14340996
Alignment:
Q  229 ctaactttttcaaagttgcgattttgacc 257  Q
    |||||||||||||||||||||||||||||    
T  14341024 ctaactttttcaaagttgcgattttgacc 14340996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 27178458 - 27178410
Alignment:
Q  209 ttaattgcaattttagccccctaactttttcaaagttgcgattttgacc 257  Q
    ||||| ||| ||||||||| | |||||||||||||||| ||||||||||    
T  27178458 ttaatagcagttttagccctccaactttttcaaagttgtgattttgacc 27178410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 33329613 - 33329669
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||| ||| |||| |||| ||||||||| | ||||||||||||||||||| ||||    
T  33329613 cttaatagcagttttcgccctctaacttttacgaagttgcgattttgaccccctaag 33329669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 44433378 - 44433334
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattt 252  Q
    |||||| ||| ||||||||||||||||||| || |||||||||||    
T  44433378 cttaatagcagttttagccccctaacttttccacagttgcgattt 44433334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 19652 - 19602
Alignment:
Q  209 ttaattgcaattttagccccctaactttttcaaagttgcgattttgacccc 259  Q
    ||||| ||| |||||| ||||||||||||||||||||||||||||| ||||    
T  19652 ttaatagcagttttagtcccctaactttttcaaagttgcgattttggcccc 19602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 3641 - 3697
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||| ||| ||||||||||||||||||  |||||||||||||||| |||| ||||    
T  3641 cttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaag 3697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 3641 - 3697
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||| ||| ||||||||||||||||||  |||||||||||||||| |||| ||||    
T  3641 cttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaag 3697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 3068 - 3019
Alignment:
Q  209 ttaattgcaattttagccccctaactttttcaaagttgcgattttgaccc 258  Q
    ||||| ||| ||||||  |||||||||| |||||||||||||||||||||    
T  3068 ttaatagcagttttagttccctaactttctcaaagttgcgattttgaccc 3019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0372 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0372
Description:

Target: scaffold0372; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 126 - 171
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgatttt 253  Q
    |||||| ||| |||||||| ||||||||| ||||||||||||||||    
T  126 cttaatagcagttttagcctcctaactttctcaaagttgcgatttt 171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 145366 - 145411
Alignment:
Q  219 ttttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||| ||||||||||| ||||||||||||||||| |||| ||||    
T  145366 ttttagtcccctaactttctcaaagttgcgattttgcccccctaag 145411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1458 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1458
Description:

Target: scaffold1458; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 1473 - 1529
Alignment:
Q  208 cttaattgcaattttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    |||||| ||| ||||||||||||||||||  |||||||| ||||||| |||| ||||    
T  1473 cttaatagcagttttagccccctaactttcacaaagttgagattttggccccctaag 1529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 416 - 460
Alignment:
Q  220 tttagccccctaactttttcaaagttgcgattttgaccccataag 264  Q
    ||||||||||||||||  ||||||||||||||||| |||| ||||    
T  416 tttagccccctaacttcctcaaagttgcgattttggccccctaag 460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University