View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6280_low_1 (Length: 872)
Name: NF6280_low_1
Description: NF6280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6280_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 1e-92; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 433 - 854
Target Start/End: Original strand, 24653697 - 24654137
Alignment:
| Q |
433 |
aaataatatttaatacaaacatc-agagcatgttctggagaaagctaaaagtctgctcgatatcaatatagtc-----attccaaatcaggttccccaac |
526 |
Q |
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| T |
24653697 |
aaataattttttatacaaacatctagagtatgttctggagaaagctaaaagtctgtttgatgtcaatatagccattatattccaaatcaggttccccagc |
24653796 |
T |
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| Q |
527 |
tccaaatttagctttacttttgtaaaaggaaagatgtgtaaatatgagcttaaagtt-ttagaattcgaaagagataggttacttagctgcatcctaaaa |
625 |
Q |
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| T |
24653797 |
tccaaatttagctttatttttataaaaggaaagatgtataaatatgagcctatagttattagaagacaaaagagatagattacttagcttcatcctaaaa |
24653896 |
T |
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| Q |
626 |
atcattgagcataaaatccttagacgaataattgattggtaag--------------tcacactcacacagattcactaaaaacatcggttaaaatgaag |
711 |
Q |
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| T |
24653897 |
atccttgagcttggaatccttcaacaaataattgattggtaagtcacacagtgtgactcacactcatactgattcgctaaaaacatcatttaaaatgaac |
24653996 |
T |
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| Q |
712 |
aagctgattttttattaagaaaactgtgatcaatattcactaataacatttatatttagtatgaaaatctaccttagagcagcagggaaggcatagctga |
811 |
Q |
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| T |
24653997 |
aagctga--ttttattaaaaacactatgatcaatattcactaataacatttagatttagtaagaaaatctaccttagagcagcagggaagacatagctga |
24654094 |
T |
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| Q |
812 |
taggaataatgtcactgagcagtctacttctggatctttaagc |
854 |
Q |
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| T |
24654095 |
aagaaataatgtcactgagcagactgcctcttgaactttaagc |
24654137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 734 - 825
Target Start/End: Original strand, 24682624 - 24682715
Alignment:
| Q |
734 |
actgtgatcaatattcactaataacatttatatttagtatgaaaatctaccttagagcagcagggaaggcatagctgataggaataatgtca |
825 |
Q |
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| T |
24682624 |
actgtgatcaatattcactaataatatttagatttagtaagaaaatctaccttagagcagcagggaaggcatagctgataggaataatgtca |
24682715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 293 - 376
Target Start/End: Original strand, 24639473 - 24639556
Alignment:
| Q |
293 |
cagcttggttcctacaaacgaaaaagacaaccaaatagtattggacacaaaatcaaaaacttcatctcatgcacaaatgttata |
376 |
Q |
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| T |
24639473 |
cagctcggatcctacaaatgtaaaagaccaccaactggtatttgacataaaattaaaaacttcaactcatgaacaaatgttata |
24639556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 320 - 386
Target Start/End: Original strand, 24716186 - 24716252
Alignment:
| Q |
320 |
caaccaaatagtattggacacaaaatcaaaaacttcatctcatgcacaaatgttatatgaaatatca |
386 |
Q |
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| T |
24716186 |
caaccaaatagtatttgacataaaataaaagacttctactcatgcacaaattttatgtgaaatatca |
24716252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 341 - 397
Target Start/End: Original strand, 24637576 - 24637632
Alignment:
| Q |
341 |
aaaatcaaaaacttcatctcatgcacaaatgttatatgaaatatcagaccgcaaata |
397 |
Q |
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| T |
24637576 |
aaaataaaaaacttcaactaatgcacaaatgttatgtgaaatatcataccccaaata |
24637632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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