View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6280_low_4 (Length: 374)
Name: NF6280_low_4
Description: NF6280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6280_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 11 - 357
Target Start/End: Complemental strand, 47295102 - 47294755
Alignment:
| Q |
11 |
cacagagcagttgaagatcattccgatcaataggataccttgcattgttagtatgtaggagttgcacgtggcattccagcaaaactgtaagatataactg |
110 |
Q |
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| T |
47295102 |
cacaaagcagttgaagatcattcctatcaataggataccctgcattgttagtatgtaggagttgcacgtggcattccagcaaaactgtaagatataactg |
47295003 |
T |
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| Q |
111 |
gtatgtttacctgaggaatccatttcct-gtcaggataaattttgccgaacacctactggtaacacagctccaatcaagaatagccatacaaggtttcaa |
209 |
Q |
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| T |
47295002 |
gtatgtttacctgaggaatccatttcctagtcaggataaattttgccgaacacctactggtaacacagctccaatcaagaatagccatacaaggtttcaa |
47294903 |
T |
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| Q |
210 |
tacaatccaccgggtccaaatagccgcctcagcccaatcgaacaccaaataacagatgcatcaaatgtcactctgtatttggggcaagtacaagggactg |
309 |
Q |
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| T |
47294902 |
tacaatccaccgggtccaaatagccgcctcagcccaatcgaacaccaaataacagatgcatcaaatgtcactctgtatttggggcaagtacaagggactg |
47294803 |
T |
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| Q |
310 |
tcgtggcgagctttatcaaccatgcaaatgtcacgaatgccttccaac |
357 |
Q |
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| T |
47294802 |
tcgtggcgagctttatcaaccatgcaaatgtcacgaatgccttccaac |
47294755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 68 - 341
Target Start/End: Complemental strand, 56046841 - 56046561
Alignment:
| Q |
68 |
ggagttgcacgtggcattccagcaaaactgtaagatataactggtatgtttacctgaggaatccatttcctgtcaggataaattttgccgaacaccta-- |
165 |
Q |
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| T |
56046841 |
ggagttgcaggtggcattccagcaaaaccataagatataactggtatgtttatcagaggaatccatttcttgttagggtagattttgctaaacacccaaa |
56046742 |
T |
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| Q |
166 |
------ctggtaacacagctccaatcaagaatagccatacaaggtttcaatacaatccaccgggtccaaatagccgcctcagcccaatcgaacaccaaat |
259 |
Q |
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| T |
56046741 |
caggaactggcaacactgctccaaccaagaatagccatacaaggtttcggtacaatccacctggtccgaatagccgcttcggtccgattaacccccatat |
56046642 |
T |
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| Q |
260 |
aacagatgcatcaaatgtcactctgtatttggggcaagtacaagggactgtcgtggcgagctttatcaaccatgcaaatgtc |
341 |
Q |
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| T |
56046641 |
aacagatgcatcaaatgtcactcggtatttgggacaagtccaa-ggactatcatggtgagctttatcatccatgcaaatgtc |
56046561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 65 - 298
Target Start/End: Complemental strand, 55708152 - 55707908
Alignment:
| Q |
65 |
gtaggagttgcacgtggcattccagcaaaactgtaagatataactggtatgtttacctgaggaatccatttcctgtcaggataaattttgccgaacacct |
164 |
Q |
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| T |
55708152 |
gtaggagttgcaggtggcattccagcaaaaccataagatataactggtatgtttatcagagaaaagcatttcttgtcagcatatattttgctgaatgcct |
55708053 |
T |
|
| Q |
165 |
a--------ctggtaacacagctccaatcaagaatagccatacaaggtttcaatacaatccaccgggtccaaat---agccgcctcagcccaatcgaaca |
253 |
Q |
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| T |
55708052 |
aaacaagaactggtaacacagccccaataaagaataaccatacaaggtttcgatacaatccaccgggtccaaattatagccgccttggtcaaatcaaact |
55707953 |
T |
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| Q |
254 |
ccaaataacagatgcatcaaatgtcactctgtatttggggcaagt |
298 |
Q |
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| T |
55707952 |
gcatataaaagatgcatcaaatgccactctgtatttgggacaagt |
55707908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 35802451 - 35802497
Alignment:
| Q |
65 |
gtaggagttgcacgtggcattccagcaaaactgtaagatataactgg |
111 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
35802451 |
gtaggagttgcaggtggcattccagcaaaaccataagatataactgg |
35802497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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