View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6280_low_5 (Length: 372)
Name: NF6280_low_5
Description: NF6280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6280_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 81 - 228
Target Start/End: Complemental strand, 13035873 - 13035726
Alignment:
| Q |
81 |
cactaaatcatgcactaaatctatatatttatatatttttgatctaaaaaaccatacgcttataataaattaattctaaataaatttttatccgaaaata |
180 |
Q |
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| T |
13035873 |
cactaaatcatgcactaaatctatatatttatatatttttgatctaaaaaaccatacgcttataataaattaattctaaataaatttttatccgaaaata |
13035774 |
T |
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| Q |
181 |
aaacagatattgtaatatagatttgtttttataaatctgatacctcat |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13035773 |
aaacagatattgtaatatagatttgtttttataaatctgatacttcat |
13035726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 81 - 228
Target Start/End: Complemental strand, 13105848 - 13105701
Alignment:
| Q |
81 |
cactaaatcatgcactaaatctatatatttatatatttttgatctaaaaaaccatacgcttataataaattaattctaaataaatttttatccgaaaata |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13105848 |
cactaaatcatgcactaaatctatatatttatatatttttgatctaaaaaaccatacgcttataataaattaattctaaataaatttttatccgaaaata |
13105749 |
T |
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| Q |
181 |
aaacagatattgtaatatagatttgtttttataaatctgatacctcat |
228 |
Q |
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| T |
13105748 |
aaacagatattgtaatatagatttgtttttataaatctgatacttcat |
13105701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 263 - 362
Target Start/End: Complemental strand, 13035727 - 13035628
Alignment:
| Q |
263 |
atatgctcagacattttctatagtattatatagaaggtgaaggacaaatatataaatatttatcaaatcaaatcataaaagaaaaactttgatgatgatg |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
13035727 |
atatgctcagacattttctatagtattatatagaaggtgaaagacaaatatataaattttaatcaaatcaaatcataaaagaaaaactttgatgatgatg |
13035628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 263 - 362
Target Start/End: Complemental strand, 13105702 - 13105603
Alignment:
| Q |
263 |
atatgctcagacattttctatagtattatatagaaggtgaaggacaaatatataaatatttatcaaatcaaatcataaaagaaaaactttgatgatgatg |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
13105702 |
atatgctcagacattttctatagtattatatagaaggtgaaagacaaatatataaattttaatcaaatcaaatcataaaagaaaaactttgatgatgatg |
13105603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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