View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6280_low_9 (Length: 202)

Name: NF6280_low_9
Description: NF6280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6280_low_9
NF6280_low_9
[»] chr8 (11 HSPs)
chr8 (85-177)||(13514895-13514987)
chr8 (85-177)||(13604428-13604520)
chr8 (85-177)||(13513414-13513506)
chr8 (85-177)||(13602947-13603039)
chr8 (85-177)||(21670058-21670150)
chr8 (138-177)||(44103326-44103365)
chr8 (139-177)||(39323835-39323873)
chr8 (146-191)||(38665878-38665923)
chr8 (85-177)||(44101942-44102035)
chr8 (138-174)||(13360400-13360436)
chr8 (139-191)||(21961871-21961923)
[»] chr4 (15 HSPs)
chr4 (127-191)||(18358389-18358453)
chr4 (127-191)||(36604476-36604540)
chr4 (138-186)||(38371826-38371874)
chr4 (127-177)||(36604871-36604921)
chr4 (132-177)||(2292191-2292236)
chr4 (132-177)||(2293555-2293600)
chr4 (1-36)||(1420544-1420579)
chr4 (1-36)||(2016800-2016835)
chr4 (1-36)||(21957737-21957772)
chr4 (133-187)||(96701-96755)
chr4 (133-191)||(2310798-2310856)
chr4 (141-191)||(53150452-53150502)
chr4 (1-34)||(14449555-14449588)
chr4 (146-191)||(53151589-53151634)
chr4 (153-189)||(15445498-15445534)
[»] chr3 (5 HSPs)
chr3 (127-191)||(7483146-7483209)
chr3 (127-177)||(7483555-7483605)
chr3 (133-191)||(5416240-5416298)
chr3 (133-191)||(39288455-39288513)
chr3 (133-191)||(55443566-55443624)
[»] chr2 (10 HSPs)
chr2 (127-177)||(37982727-37982777)
chr2 (137-191)||(4513769-4513823)
chr2 (132-191)||(41296470-41296529)
chr2 (128-177)||(26205050-26205099)
chr2 (141-189)||(8537062-8537110)
chr2 (1-36)||(6592733-6592768)
chr2 (1-36)||(34679106-34679141)
chr2 (133-191)||(4630100-4630158)
chr2 (133-190)||(3255895-3255952)
chr2 (132-177)||(4512147-4512192)
[»] chr7 (10 HSPs)
chr7 (127-186)||(43111465-43111524)
chr7 (127-182)||(24494021-24494076)
chr7 (127-186)||(26407424-26407483)
chr7 (1-35)||(20184926-20184960)
chr7 (133-191)||(41616666-41616724)
chr7 (1-36)||(6792066-6792101)
chr7 (127-177)||(24495081-24495131)
chr7 (1-34)||(36903271-36903304)
chr7 (141-174)||(44113479-44113512)
chr7 (4-36)||(41243653-41243685)
[»] chr1 (8 HSPs)
chr1 (132-177)||(51218996-51219041)
chr1 (140-191)||(34531712-34531763)
chr1 (139-179)||(27690657-27690697)
chr1 (4-36)||(27864430-27864462)
chr1 (1-36)||(3377510-3377545)
chr1 (1-36)||(14978806-14978841)
chr1 (133-189)||(33850344-33850400)
chr1 (133-189)||(33943578-33943634)
[»] chr6 (2 HSPs)
chr6 (138-191)||(13176349-13176402)
chr6 (133-187)||(28225466-28225520)
[»] chr5 (3 HSPs)
chr5 (138-191)||(20991665-20991718)
chr5 (1-34)||(3333971-3334004)
chr5 (141-189)||(2166161-2166209)
[»] scaffold0038 (1 HSPs)
scaffold0038 (133-187)||(25964-26018)
[»] scaffold0015 (1 HSPs)
scaffold0015 (139-191)||(207814-207866)


Alignment Details
Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 85 - 177
Target Start/End: Complemental strand, 13514987 - 13514895
Alignment:
Q  85 aggcttaatacatcctatagtcccttaacttaannnnnnnnatcagtatggttccctaactaaaaaacgtctcaaattggtctcttatgtctt 177  Q
    |||||||||||||||| | ||||||||||||||         |||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  13514987 aggcttaatacatcctttggtcccttaacttaattctttttctcagtatggtcccctaactaaaaaacgtctcaaattggtcccttatgtctt 13514895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 85 - 177
Target Start/End: Complemental strand, 13604520 - 13604428
Alignment:
Q  85 aggcttaatacatcctatagtcccttaacttaannnnnnnnatcagtatggttccctaactaaaaaacgtctcaaattggtctcttatgtctt 177  Q
    |||||||||||||||| | ||||||||||||||         |||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  13604520 aggcttaatacatcctttggtcccttaacttaattctttttctcagtatggtcccctaactaaaaaacgtctcaaattggtcccttatgtctt 13604428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 13513414 - 13513506
Alignment:
Q  85 aggcttaatacatcctatagtcccttaacttaannnnnnnnatcagtatggttccctaactaaaaaacgtctcaaattggtctcttatgtctt 177  Q
    |||||||||||||||| | ||||||||||||||         ||| |||||| ||||||||||||||||||||||||||||| ||||||||||    
T  13513414 aggcttaatacatcctttggtcccttaacttaattctttttctcaatatggtcccctaactaaaaaacgtctcaaattggtcccttatgtctt 13513506  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 13602947 - 13603039
Alignment:
Q  85 aggcttaatacatcctatagtcccttaacttaannnnnnnnatcagtatggttccctaactaaaaaacgtctcaaattggtctcttatgtctt 177  Q
    |||||||||||||||| | ||||||||||||||         ||| |||||| ||||||||||||||||||||||||||||| ||||||||||    
T  13602947 aggcttaatacatcctttggtcccttaacttaattctttttctcaatatggtcccctaactaaaaaacgtctcaaattggtcccttatgtctt 13603039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 21670058 - 21670150
Alignment:
Q  85 aggcttaatacatcctatagtcccttaacttaannnnnnnnatcagtatggttccctaactaaaaaacgtctcaaattggtctcttatgtctt 177  Q
    |||||||||||||||  | ||||||||||||||         |||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  21670058 aggcttaatacatccgttggtcccttaacttaattctttttctcagtatggtcccctaactaaaaaacgtctcaaattggtcccttatgtctt 21670150  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 44103365 - 44103326
Alignment:
Q  138 ccctaactaaaaaacgtctcaaattggtctcttatgtctt 177  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  44103365 ccctaactaaaaaacgtctcaaattggtctcttatgtctt 44103326  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 39323835 - 39323873
Alignment:
Q  139 cctaactaaaaaacgtctcaaattggtctcttatgtctt 177  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  39323835 cctaactaaaaaacgtctcaaattgatctcttatgtctt 39323873  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 38665923 - 38665878
Alignment:
Q  146 aaaaaacgtctcaaattggtctcttatgtcttttgtcgttatctct 191  Q
    ||||||||| ||||| ||||||||||| ||||||||||||||||||    
T  38665923 aaaaaacgtttcaaactggtctcttatctcttttgtcgttatctct 38665878  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 44101942 - 44102035
Alignment:
Q  85 aggcttaatacatcctatagtcccttaacttaannnnnnnnatcagtatggttccctaactaaaa-aacgtctcaaattggtctcttatgtctt 177  Q
    |||||||||| ||| | ||||||||||||||||         |||| |||||  ||||||||||| ||||||||||||||||||||||||||||    
T  44101942 aggcttaatatatcatttagtcccttaacttaattctttttttcagaatggtgtcctaactaaaaaaacgtctcaaattggtctcttatgtctt 44102035  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 13360400 - 13360436
Alignment:
Q  138 ccctaactaaaaaacgtctcaaattggtctcttatgt 174  Q
    |||||| |||||||||||||||||||||| |||||||    
T  13360400 ccctaattaaaaaacgtctcaaattggtcccttatgt 13360436  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 21961871 - 21961923
Alignment:
Q  139 cctaactaaaaaacgtctcaaattggtctcttatgtcttttgtcgttatctct 191  Q
    ||||| ||||||||||||||||||| || |||||||||| |  ||||||||||    
T  21961871 cctaattaaaaaacgtctcaaattgatcccttatgtcttcttccgttatctct 21961923  T

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Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 18358453 - 18358389
Alignment:
Q  127 tcagtatggttccctaactaaaaaacgtctcaaattggtctcttatgtcttttgtcgttatctct 191  Q
    |||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||    
T  18358453 tcagtatggtcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcgttacctct 18358389  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 36604476 - 36604540
Alignment:
Q  127 tcagtatggttccctaactaaaaaacgtctcaaattggtctcttatgtcttttgtcgttatctct 191  Q
    |||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||    
T  36604476 tcagtatggtcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcgttacctct 36604540  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 38371874 - 38371826
Alignment:
Q  138 ccctaactaaaaaacgtctcaaattggtctcttatgtcttttgtcgtta 186  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||    
T  38371874 ccctaactaaaaaacgtctcaaattgatcccttatgtcttttgtcgtta 38371826  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 36604921 - 36604871
Alignment:
Q  127 tcagtatggttccctaactaaaaaacgtctcaaattggtctcttatgtctt 177  Q
    |||||||||| ||||||||||||||||||| ||||||||| ||||||||||    
T  36604921 tcagtatggtcccctaactaaaaaacgtcttaaattggtcccttatgtctt 36604871  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 2292191 - 2292236
Alignment:
Q  132 atggttccctaactaaaaaacgtctcaaattggtctcttatgtctt 177  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||||    
T  2292191 atggtcccctaactaaaaaacgcctcaaattggtcccttatgtctt 2292236  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 2293600 - 2293555
Alignment:
Q  132 atggttccctaactaaaaaacgtctcaaattggtctcttatgtctt 177  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||||||    
T  2293600 atggtcccctaactaaaaaacgtcttaaattggtcccttatgtctt 2293555  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 1420579 - 1420544
Alignment:
Q  1 atcgcaactttggaaaagttagggagctaaaactgc 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  1420579 atcgcaactttggaaaagttagggggctaaaactgc 1420544  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 2016835 - 2016800
Alignment:
Q  1 atcgcaactttggaaaagttagggagctaaaactgc 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  2016835 atcgcaactttggaaaagttagggggctaaaactgc 2016800  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 21957737 - 21957772
Alignment:
Q  1 atcgcaactttggaaaagttagggagctaaaactgc 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  21957737 atcgcaactttggaaaagttagggggctaaaactgc 21957772  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 96755 - 96701
Alignment:
Q  133 tggttccctaactaaaaaacgtctcaaattggtctcttatgtcttttgtcgttat 187  Q
    |||| ||||||||| |||  |||| ||||||||| ||||||||||||||||||||    
T  96755 tggtcccctaactataaagtgtcttaaattggtcccttatgtcttttgtcgttat 96701  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 2310856 - 2310798
Alignment:
Q  133 tggttccctaactaaaaaacgtctcaaattggtctcttatgtcttttgtcgttatctct 191  Q
    |||| ||||||||| |||| ||||||| |||||| ||||||||||||| ||||| ||||    
T  2310856 tggtcccctaactataaaatgtctcaatttggtcccttatgtcttttgccgttacctct 2310798  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 53150452 - 53150502
Alignment:
Q  141 taactaaaaaacgtctcaaattggtctcttatgtcttttgtcgttatctct 191  Q
    |||||||||||||||| ||| ||||| ||||| ||||||||| ||||||||    
T  53150452 taactaaaaaacgtcttaaactggtcccttatatcttttgtcattatctct 53150502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 14449555 - 14449588
Alignment:
Q  1 atcgcaactttggaaaagttagggagctaaaact 34  Q
    |||||||||||||||||||||||| |||||||||    
T  14449555 atcgcaactttggaaaagttagggggctaaaact 14449588  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 53151634 - 53151589
Alignment:
Q  146 aaaaaacgtctcaaattggtctcttatgtcttttgtcgttatctct 191  Q
    ||||||||||| ||||||||| ||||| ||||||||||||| ||||    
T  53151634 aaaaaacgtcttaaattggtcccttatctcttttgtcgttacctct 53151589  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 189
Target Start/End: Original strand, 15445498 - 15445534
Alignment:
Q  153 gtctcaaattggtctcttatgtcttttgtcgttatct 189  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  15445498 gtctcaatttggtctcttatgtcttttgccgttatct 15445534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 7483146 - 7483209
Alignment:
Q  127 tcagtatggttccctaactaaaaaacgtctcaaattggtctcttatgtcttttgtcgttatctct 191  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7483146 tcagtatggtccccta-ctaaaaaacgtctcaaattggtctcttatgtcttttgtcgttacctct 7483209  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 7483605 - 7483555
Alignment:
Q  127 tcagtatggttccctaactaaaaaacgtctcaaattggtctcttatgtctt 177  Q
    |||||||||| ||||||||||||||||||| ||||||||| ||||||||||    
T  7483605 tcagtatggtcccctaactaaaaaacgtcttaaattggtcccttatgtctt 7483555  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 5416240 - 5416298
Alignment:
Q  133 tggttccctaactaaaaaacgtctcaaattggtctcttatgtcttttgtcgttatctct 191  Q
    |||| ||||||||| |||| ||||||| |||||| ||||||||||||||||||| ||||    
T  5416240 tggtcccctaactataaaatgtctcaatttggtcccttatgtcttttgtcgttacctct 5416298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 39288513 - 39288455
Alignment:
Q  133 tggttccctaactaaaaaacgtctcaaattggtctcttatgtcttttgtcgttatctct 191  Q
    |||| ||||||||| |||  ||||||| |||||| |||||||||| |||||||||||||    
T  39288513 tggtcccctaactataaagtgtctcaatttggtcccttatgtcttatgtcgttatctct 39288455  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 55443624 - 55443566
Alignment:
Q  133 tggttccctaactaaaaaacgtctcaaattggtctcttatgtcttttgtcgttatctct 191  Q
    |||| ||||||||| |||  ||||||| |||||| ||||||||||||||||||| ||||    
T  55443624 tggtcccctaactataaagtgtctcaatttggtcccttatgtcttttgtcgttacctct 55443566  T

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Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 37982727 - 37982777
Alignment:
Q  127 tcagtatggttccctaactaaaaaacgtctcaaattggtctcttatgtctt 177  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37982727 tcagtatggttccctaactaaaaaacgtctcaaattggtcccttatgtctt 37982777  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 4513823 - 4513769
Alignment:
Q  137 tccctaactaaaaaacgtctcaaattggtctcttatgtcttttgtcgttatctct 191  Q
    |||||||||||||||||||| |||||||||| ||||||||| |||||||| ||||    
T  4513823 tccctaactaaaaaacgtcttaaattggtcttttatgtcttctgtcgttacctct 4513769  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 41296529 - 41296470
Alignment:
Q  132 atggttccctaactaaaaaacgtctcaaattggtctcttatgtcttttgtcgttatctct 191  Q
    ||||| || |||||||||||||| |||| |||||| ||||||| ||||||||||||||||    
T  41296529 atggtcccttaactaaaaaacgtttcaatttggtcccttatgttttttgtcgttatctct 41296470  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 26205050 - 26205099
Alignment:
Q  128 cagtatggttccctaactaaaaaacgtctcaaattggtctcttatgtctt 177  Q
    ||||||| | || |||||||||||||||||||||||||| ||||||||||    
T  26205050 cagtatgatcccttaactaaaaaacgtctcaaattggtcccttatgtctt 26205099  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 8537062 - 8537110
Alignment:
Q  141 taactaaaaaacgtctcaaattggtctcttatgtcttttgtcgttatct 189  Q
    ||||||||||| |||||||||||||| ||||||| || |||||||||||    
T  8537062 taactaaaaaatgtctcaaattggtcccttatgtattctgtcgttatct 8537110  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 6592768 - 6592733
Alignment:
Q  1 atcgcaactttggaaaagttagggagctaaaactgc 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  6592768 atcgcaactttggaaaagttagggggctaaaactgc 6592733  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 34679141 - 34679106
Alignment:
Q  1 atcgcaactttggaaaagttagggagctaaaactgc 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  34679141 atcgcaactttggaaaagttagggggctaaaactgc 34679106  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 4630158 - 4630100
Alignment:
Q  133 tggttccctaactaaaaaacgtctcaaattggtctcttatgtcttttgtcgttatctct 191  Q
    |||| ||||||||| |||  ||||||| ||||||||||||||||||||| |||| ||||    
T  4630158 tggtcccctaactataaagtgtctcaatttggtctcttatgtcttttgttgttacctct 4630100  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 3255952 - 3255895
Alignment:
Q  133 tggttccctaactaaaaaacgtctcaaattggtctcttatgtcttttgtcgttatctc 190  Q
    |||| ||||||||| |||  || |||| |||||||||||||||||||| |||||||||    
T  3255952 tggtcccctaactataaagtgtttcaatttggtctcttatgtcttttgccgttatctc 3255895  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 4512147 - 4512192
Alignment:
Q  132 atggttccctaactaaaaaacgtctcaaattggtctcttatgtctt 177  Q
    ||||| || |||||||||||||||||||||||||| ||| ||||||    
T  4512147 atggtcccataactaaaaaacgtctcaaattggtcccttgtgtctt 4512192  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 43111465 - 43111524
Alignment:
Q  127 tcagtatggttccctaactaaaaaacgtctcaaattggtctcttatgtcttttgtcgtta 186  Q
    ||||| |||| |||||||||||||||||||||||||| || |||||||||||||||||||    
T  43111465 tcagtgtggtcccctaactaaaaaacgtctcaaattgatcacttatgtcttttgtcgtta 43111524  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 24494021 - 24494076
Alignment:
Q  127 tcagtatggttccctaactaaaaaacgtctcaaattggtctcttatgtcttttgtc 182  Q
    |||||||| | |||||||||||||| |||||||||||||| |||||||||||||||    
T  24494021 tcagtatgatcccctaactaaaaaatgtctcaaattggtcccttatgtcttttgtc 24494076  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 26407483 - 26407424
Alignment:
Q  127 tcagtatggttccctaactaaaaaacgtctcaaattggtctcttatgtcttttgtcgtta 186  Q
    ||||| |||| | |||||||||||||||||||||||||||||||||||  ||||||||||    
T  26407483 tcagtttggtcctctaactaaaaaacgtctcaaattggtctcttatgttatttgtcgtta 26407424  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 20184960 - 20184926
Alignment:
Q  1 atcgcaactttggaaaagttagggagctaaaactg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  20184960 atcgcaactttggaaaagttagggagctaaaactg 20184926  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 41616666 - 41616724
Alignment:
Q  133 tggttccctaactaaaaaacgtctcaaattggtctcttatgtcttttgtcgttatctct 191  Q
    |||| ||||||||| |||  ||||||| |||||| ||||||||||||||||||||||||    
T  41616666 tggtcccctaactataaagtgtctcaatttggtcccttatgtcttttgtcgttatctct 41616724  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 6792066 - 6792101
Alignment:
Q  1 atcgcaactttggaaaagttagggagctaaaactgc 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  6792066 atcgcaactttggaaaagttagggggctaaaactgc 6792101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 24495131 - 24495081
Alignment:
Q  127 tcagtatggttccctaactaaaaaacgtctcaaattggtctcttatgtctt 177  Q
    |||||||| | || |||||||||||| ||||||||||||| ||||||||||    
T  24495131 tcagtatgatcccttaactaaaaaacctctcaaattggtcccttatgtctt 24495081  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 36903304 - 36903271
Alignment:
Q  1 atcgcaactttggaaaagttagggagctaaaact 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  36903304 atcgcaactttggaaaagtaagggagctaaaact 36903271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 44113479 - 44113512
Alignment:
Q  141 taactaaaaaacgtctcaaattggtctcttatgt 174  Q
    |||||||||||||||||||||||||| |||||||    
T  44113479 taactaaaaaacgtctcaaattggtcccttatgt 44113512  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 41243685 - 41243653
Alignment:
Q  4 gcaactttggaaaagttagggagctaaaactgc 36  Q
    ||||||||||||||||||||| |||||||||||    
T  41243685 gcaactttggaaaagttagggggctaaaactgc 41243653  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 51219041 - 51218996
Alignment:
Q  132 atggttccctaactaaaaaacgtctcaaattggtctcttatgtctt 177  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||    
T  51219041 atggtcccctaactaaaaaacgtctcaaattggtcccttatgtctt 51218996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 191
Target Start/End: Original strand, 34531712 - 34531763
Alignment:
Q  140 ctaactaaaaaacgtctcaaattggtctcttatgtcttttgtcgttatctct 191  Q
    ||||||| |||| ||||||| ||||||||||||||||| |||||||||||||    
T  34531712 ctaactataaaatgtctcaatttggtctcttatgtcttctgtcgttatctct 34531763  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 27690697 - 27690657
Alignment:
Q  139 cctaactaaaaaacgtctcaaattggtctcttatgtctttt 179  Q
    ||||||||||||||||||||||||||| |||||||| ||||    
T  27690697 cctaactaaaaaacgtctcaaattggtttcttatgtatttt 27690657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 27864430 - 27864462
Alignment:
Q  4 gcaactttggaaaagttagggagctaaaactgc 36  Q
    |||||||||||||||||||||||||||||||||    
T  27864430 gcaactttggaaaagttagggagctaaaactgc 27864462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 3377545 - 3377510
Alignment:
Q  1 atcgcaactttggaaaagttagggagctaaaactgc 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  3377545 atcgcaactttggaaaagttagggggctaaaactgc 3377510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 14978841 - 14978806
Alignment:
Q  1 atcgcaactttggaaaagttagggagctaaaactgc 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  14978841 atcgcaactttggaaaagttagggggctaaaactgc 14978806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 33850344 - 33850400
Alignment:
Q  133 tggttccctaactaaaaaacgtctcaaattggtctcttatgtcttttgtcgttatct 189  Q
    |||| |||||||||||||||||||| | ||| || ||||||| || |||||||||||    
T  33850344 tggtcccctaactaaaaaacgtctctatttgatcccttatgtattatgtcgttatct 33850400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 33943634 - 33943578
Alignment:
Q  133 tggttccctaactaaaaaacgtctcaaattggtctcttatgtcttttgtcgttatct 189  Q
    |||| |||||||||||||||||||| | ||| || ||||||| || |||||||||||    
T  33943634 tggtcccctaactaaaaaacgtctctatttgatcccttatgtattatgtcgttatct 33943578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 13176402 - 13176349
Alignment:
Q  138 ccctaactaaaaaacgtctcaaattggtctcttatgtcttttgtcgttatctct 191  Q
    ||||||||| |||| ||||||| ||||||| |||||||||||||||||| ||||    
T  13176402 ccctaactataaaatgtctcaatttggtcttttatgtcttttgtcgttacctct 13176349  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 28225466 - 28225520
Alignment:
Q  133 tggttccctaactaaaaaacgtctcaaattggtctcttatgtcttttgtcgttat 187  Q
    |||| ||||||||| |||  ||||||| |||||| ||||||||||||||||||||    
T  28225466 tggtcccctaactataaagtgtctcaatttggtcccttatgtcttttgtcgttat 28225520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 20991718 - 20991665
Alignment:
Q  138 ccctaactaaaaaacgtctcaaattggtctcttatgtcttttgtcgttatctct 191  Q
    ||||||||| |||| ||||||| |||||| ||||||||||||||||||| ||||    
T  20991718 ccctaactataaaatgtctcaatttggtcccttatgtcttttgtcgttacctct 20991665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 3333971 - 3334004
Alignment:
Q  1 atcgcaactttggaaaagttagggagctaaaact 34  Q
    |||||||||||||||||||||||| |||||||||    
T  3333971 atcgcaactttggaaaagttagggggctaaaact 3334004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 2166161 - 2166209
Alignment:
Q  141 taactaaaaaacgtctcaaattggtctcttatgtcttttgtcgttatct 189  Q
    |||||||||||||||||||| ||||| ||||||| || || ||||||||    
T  2166161 taactaaaaaacgtctcaaactggtcccttatgtattctgccgttatct 2166209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 25964 - 26018
Alignment:
Q  133 tggttccctaactaaaaaacgtctcaaattggtctcttatgtcttttgtcgttat 187  Q
    |||| ||||||||| |||  ||||||| |||||| ||||||||||||||||||||    
T  25964 tggtcccctaactataaagtgtctcaatttggtcccttatgtcttttgtcgttat 26018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 207866 - 207814
Alignment:
Q  139 cctaactaaaaaacgtctcaaattggtctcttatgtcttttgtcgttatctct 191  Q
    ||||| ||||||||||||||||||| || |||||||||| |  ||||||||||    
T  207866 cctaattaaaaaacgtctcaaattgatcccttatgtcttcttccgttatctct 207814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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