View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6282_high_11 (Length: 237)
Name: NF6282_high_11
Description: NF6282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6282_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 7057622 - 7057400
Alignment:
| Q |
1 |
tttcaagtaaaaacaagcgacatagaaaaattataaccgaatatataatctactaatctaaataattcaagatttaagtcaaatcaaatgacaaaagaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7057622 |
tttcaagtaaaaacaagcgacatagaaaaattataaccgaatatattatctactaatctaaataattcaagatttaagtcaaatcaaatgacaaaagaaa |
7057523 |
T |
|
| Q |
101 |
agtgcttagctagttagttatataaagttgacaaaaaagaagtggttagctacacaaaaatcaggtagtgattcataagaacgattcagaattcatcgtt |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
7057522 |
agtgcttagttagttagttatataaagttgacaaaaaaaaagtggttagctacacaaaagtcagttagtgattcataagaacgattcagaattcatcgtt |
7057423 |
T |
|
| Q |
201 |
gtgaatcgagattcatcttaatg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
7057422 |
gtgaatcgagattcatcttaatg |
7057400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 7048727 - 7048519
Alignment:
| Q |
1 |
tttcaagtaaaaacaagcgacatagaaaaattataaccgaatatataatctactaatct--aaataattcaagatttaagtcaaatcaaatgacaaaaga |
98 |
Q |
| |
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||||||||||||| ||||||| | ||| | |||||||| ||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
7048727 |
tttcaagtaaaaa-aagcgacgtcgaatagttataacccaatatatcatctactaacctcaaaataattcaagatttaagtcaaatcaaatgacaaaaga |
7048629 |
T |
|
| Q |
99 |
aaagtgcttagctagttagttatataaagttgacaaaaaagaagtggttagctacacaaaaatcaggtagtgattcataagaacgattcagaattcatcg |
198 |
Q |
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|| | |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
7048628 |
aaggagcttag--------ttatataaagttgacaaaaaagaagtggttagctacacaaagatcaggtagtgattcataagaacgatttggaattcatcg |
7048537 |
T |
|
| Q |
199 |
ttgtgaatcgagattcat |
216 |
Q |
| |
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| |||||||||||||||| |
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| T |
7048536 |
tagtgaatcgagattcat |
7048519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 7041546 - 7041484
Alignment:
| Q |
160 |
atcaggtagtgattcataagaacgattcagaattcatcgttgtgaatcgagattcatcttaat |
222 |
Q |
| |
|
||||| |||||||||||||||| || || |||||||| | |||||||||||||||||||||| |
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|
| T |
7041546 |
atcagatagtgattcataagaaagaatcgcaattcatcatagtgaatcgagattcatcttaat |
7041484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 24188046 - 24188003
Alignment:
| Q |
163 |
aggtagtgattcataagaacgattcagaattcatcgttgtgaat |
206 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| || |||||| |
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|
| T |
24188046 |
aggtagtgattcataagaacgaatcagaattcattgtggtgaat |
24188003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 54521808 - 54521854
Alignment:
| Q |
60 |
aaataattcaagatttaagtcaaat--caaatgacaaaagaaaagtg |
104 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||| |
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|
| T |
54521808 |
aaataaatcaagatttaagtcaaatatcaaatgacaaaagaaaagtg |
54521854 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 30015248 - 30015349
Alignment:
| Q |
5 |
aagtaaaaacaagcgacatagaaaaattataaccgaatatataatctactaatctaaataattcaagatttaagtc--aaatcaaatgacaaaagaaaag |
102 |
Q |
| |
|
||||||||||||| ||||| | ||| || ||| | ||||||| | |||||||| | |||||||||||||| ||||| ||| |||||| ||||||| ||| |
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|
| T |
30015248 |
aagtaaaaacaagtgacatgggaaagttttaagctaatatatcaactactaatatcaataattcaagattcaagtcataaaccaaatggcaaaagagaag |
30015347 |
T |
|
| Q |
103 |
tg |
104 |
Q |
| |
|
|| |
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|
| T |
30015348 |
tg |
30015349 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 32471657 - 32471605
Alignment:
| Q |
60 |
aaataattcaagatttaagtcaaatcaaatgacaaaagaaaagtgcttagcta |
112 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||| ||||||| ||||||| |
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|
| T |
32471657 |
aaataattcaagattcaagtcaaatataatgacaaaataaaagtggttagcta |
32471605 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 20553897 - 20553943
Alignment:
| Q |
60 |
aaataattcaagatttaagtca--aatcaaatgacaaaagaaaagtg |
104 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||| |
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|
| T |
20553897 |
aaataattgaagatttaagtcataaatcaaatgacaaaagaaaagtg |
20553943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 32117810 - 32117752
Alignment:
| Q |
48 |
atctactaatctaaataattcaagatttaagtca--aatcaaatgacaaaagaaaagtg |
104 |
Q |
| |
|
||||||||| || ||| |||||||||| |||||| ||||||||||||||||||||||| |
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|
| T |
32117810 |
atctactaacctcaatgattcaagattcaagtcataaatcaaatgacaaaagaaaagtg |
32117752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 39646546 - 39646451
Alignment:
| Q |
5 |
aagtaaaaacaagcgacatagaaaaattataaccgaatatataatctactaatct--aaataattcaagatttaagtc--aaatcaaatgacaaaa |
96 |
Q |
| |
|
|||||||||||||| |||||| ||| ||||| | ||| ||| |||||||||||| |||| |||||||||| ||||| ||||||||||| |||| |
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|
| T |
39646546 |
aagtaaaaacaagcaacatagcaaacctataaactaatgtatcatctactaatctcaaaatgattcaagattgaagtcttaaatcaaatgataaaa |
39646451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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