View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6282_high_3 (Length: 565)

Name: NF6282_high_3
Description: NF6282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6282_high_3
NF6282_high_3
[»] chr4 (9 HSPs)
chr4 (1-218)||(53371792-53372009)
chr4 (1-218)||(23010941-23011158)
chr4 (345-380)||(24995022-24995057)
chr4 (345-379)||(41236497-41236531)
chr4 (98-162)||(21604143-21604207)
chr4 (345-378)||(23608385-23608418)
chr4 (345-378)||(42044284-42044317)
chr4 (292-320)||(40608539-40608567)
chr4 (349-377)||(48182967-48182995)
[»] scaffold0316 (1 HSPs)
scaffold0316 (1-217)||(2911-3127)
[»] chr7 (9 HSPs)
chr7 (1-218)||(27117752-27117969)
chr7 (345-379)||(8080299-8080333)
chr7 (345-382)||(3434702-3434739)
chr7 (345-378)||(19329992-19330025)
chr7 (349-385)||(36361835-36361871)
chr7 (345-378)||(7389538-7389571)
chr7 (138-199)||(27118418-27118479)
chr7 (349-378)||(36362168-36362197)
chr7 (345-378)||(38837367-38837400)
[»] chr8 (8 HSPs)
chr8 (378-521)||(6072637-6072779)
chr8 (231-318)||(5375386-5375473)
chr8 (152-218)||(41763786-41763852)
chr8 (345-378)||(14548072-14548105)
chr8 (349-378)||(34012213-34012242)
chr8 (345-378)||(42710211-42710244)
chr8 (349-377)||(504039-504067)
chr8 (349-377)||(23122515-23122543)
[»] chr3 (10 HSPs)
chr3 (222-344)||(8756922-8757044)
chr3 (222-344)||(27984578-27984700)
chr3 (44-210)||(7266610-7266775)
chr3 (224-344)||(32568834-32568951)
chr3 (345-378)||(33644350-33644383)
chr3 (345-378)||(48587018-48587051)
chr3 (345-377)||(49607564-49607596)
chr3 (345-377)||(53982161-53982193)
chr3 (349-383)||(11095279-11095313)
chr3 (345-382)||(31456839-31456876)
[»] chr2 (9 HSPs)
chr2 (222-344)||(40864797-40864919)
chr2 (345-379)||(28381571-28381605)
chr2 (345-378)||(7465652-7465685)
chr2 (345-382)||(17473170-17473207)
chr2 (345-377)||(5574418-5574450)
chr2 (345-377)||(13438493-13438525)
chr2 (345-377)||(28863605-28863637)
chr2 (345-378)||(19930737-19930770)
chr2 (349-377)||(10249300-10249328)
[»] chr1 (11 HSPs)
chr1 (68-205)||(32239441-32239578)
chr1 (222-344)||(20030465-20030587)
chr1 (118-216)||(32240033-32240131)
chr1 (1-46)||(32239574-32239619)
chr1 (345-382)||(26274579-26274616)
chr1 (137-218)||(51165436-51165517)
chr1 (345-379)||(27564651-27564685)
chr1 (345-377)||(48716200-48716232)
chr1 (345-376)||(37649348-37649379)
chr1 (349-377)||(41758959-41758987)
chr1 (345-377)||(47452238-47452270)
[»] chr6 (4 HSPs)
chr6 (345-378)||(32869828-32869861)
chr6 (347-380)||(6209381-6209414)
chr6 (349-378)||(11427772-11427801)
chr6 (345-378)||(29857977-29858010)
[»] chr5 (7 HSPs)
chr5 (345-378)||(2740424-2740457)
chr5 (345-377)||(14831964-14831996)
chr5 (349-378)||(16115249-16115278)
chr5 (349-378)||(33149555-33149584)
chr5 (349-378)||(40145561-40145590)
chr5 (345-377)||(16822387-16822419)
chr5 (350-378)||(18520801-18520829)
[»] scaffold0237 (1 HSPs)
scaffold0237 (345-378)||(4179-4212)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-107; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 53371792 - 53372009
Alignment:
Q  1 aagagaaatagttggatatggttggggttagcgatggagaatggagaagaggagtagttgctctgattggaggtcagggatggaagtgattctctatggc 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  53371792 aagagaaatagttggatatggttggggtcagcgatggagaatggagaagaggagtagttgctgtgattggaggtcagggatggaattgattctctatggc 53371891  T
Q  101 tttcatcaattgatgtgtttaatcctagccatctaatttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatg 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53371892 tttcatcaattgatgtgtttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatg 53371991  T
Q  201 gagcaaatctgcactcca 218  Q
    ||||| ||||||||||||    
T  53371992 gagcagatctgcactcca 53372009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 23011158 - 23010941
Alignment:
Q  1 aagagaaatagttggatatggttggggttagcgatggagaatggagaagaggagtagttgctctgattggaggtcagggatggaagtgattctctatggc 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |    
T  23011158 aagagaaatagttggatatggttggggtcagcgatggagaatggagaagaggagtagttgctgtgattggaggtcagggatggaattgattctctatgac 23011059  T
Q  101 tttcatcaattgatgtgtttaatcctagccatctaatttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatg 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23011058 tttcatcaattgatgtgtttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagagaaccaggtaaatggacagctgcataaatg 23010959  T
Q  201 gagcaaatctgcactcca 218  Q
    ||||| ||||||||||||    
T  23010958 gagcagatctgcactcca 23010941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 380
Target Start/End: Complemental strand, 24995057 - 24995022
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactctaa 380  Q
    ||||||||||||||||||||||||||||||||||||    
T  24995057 atgggaataaagggtgtctatgtatcattactctaa 24995022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 379
Target Start/End: Original strand, 41236497 - 41236531
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactcta 379  Q
    |||||||||||||||||||||||||||||||||||    
T  41236497 atgggaataaagggtgtctatgtatcattactcta 41236531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 21604207 - 21604143
Alignment:
Q  98 ggctttcatcaattgatgtgtttaatcctagccatctaatttttagttgccacgtgtcatccatc 162  Q
    |||||||||||||| |||| |||||||||||||||  |||||||| ||| |||||| ||| ||||    
T  21604207 ggctttcatcaattcatgtttttaatcctagccattcaatttttatttgacacgtggcattcatc 21604143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 378
Target Start/End: Original strand, 23608385 - 23608418
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactct 378  Q
    ||||||||||||| ||||||||||||||||||||    
T  23608385 atgggaataaaggatgtctatgtatcattactct 23608418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 378
Target Start/End: Complemental strand, 42044317 - 42044284
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactct 378  Q
    |||| |||||||||||||||||||||||||||||    
T  42044317 atggaaataaagggtgtctatgtatcattactct 42044284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 292 - 320
Target Start/End: Original strand, 40608539 - 40608567
Alignment:
Q  292 aaatttgaggggatgcagctgcatcccct 320  Q
    |||||||||||||||||||||||||||||    
T  40608539 aaatttgaggggatgcagctgcatcccct 40608567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 377
Target Start/End: Complemental strand, 48182995 - 48182967
Alignment:
Q  349 gaataaagggtgtctatgtatcattactc 377  Q
    |||||||||||||||||||||||||||||    
T  48182995 gaataaagggtgtctatgtatcattactc 48182967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 2911 - 3127
Alignment:
Q  1 aagagaaatagttggatatggttggggttagcgatggagaatggagaagaggagtagttgctctgattggaggtcagggatggaagtgattctctatggc 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  2911 aagagaaatagttggatatggttggggtcagcgatggagaatggagaagaggagtagttgctgtgattggaggtcagggatggaattgattatctatggc 3010  T
Q  101 tttcatcaattgatgtgtttaatcctagccatctaatttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatg 200  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3011 tttcatcaattgatgtgtttaatcctaaccatctgatttttagttgccacgtgtcatccatcagtgaagagaatcgggtaaatggacagctgcataaatg 3110  T
Q  201 gagcaaatctgcactcc 217  Q
    ||||| |||||||||||    
T  3111 gagcagatctgcactcc 3127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 150; Significance: 5e-79; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 27117969 - 27117752
Alignment:
Q  1 aagagaaatagttggatatggttggggttagcgatggagaatggagaagaggagtagttgctctgattggaggtcagggatggaagtgattctctatggc 100  Q
    ||||| |||||||||||||||||||||| ||||||||||||  ||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||    
T  27117969 aagaggaatagttggatatggttggggtcagcgatggagaaaagagaagaggagtagttgctatgattgggggtcagggatggaagtgattctctctggc 27117870  T
Q  101 tttcatcaattgatgtgtttaatcctagccatctaatttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatg 200  Q
    ||||||||||||||||||||||||||||| |||  |||||||||||||| |||||||||||| ||||||||||||||||||||||| | ||||||||||     
T  27117869 tttcatcaattgatgtgtttaatcctagctatcggatttttagttgccatgtgtcatccatcggtgaagagaaccgggtaaatggagaactgcataaatt 27117770  T
Q  201 gagcaaatctgcactcca 218  Q
    ||||| ||||| ||||||    
T  27117769 gagcagatctggactcca 27117752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 379
Target Start/End: Complemental strand, 8080333 - 8080299
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactcta 379  Q
    |||||||||||||||||||||||||||||||||||    
T  8080333 atgggaataaagggtgtctatgtatcattactcta 8080299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 382
Target Start/End: Original strand, 3434702 - 3434739
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactctaaaa 382  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  3434702 atgggaataaagggtgtctatgtatcattactcaaaaa 3434739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 378
Target Start/End: Original strand, 19329992 - 19330025
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactct 378  Q
    ||||||||||||||||||||||||||||||||||    
T  19329992 atgggaataaagggtgtctatgtatcattactct 19330025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 36361871 - 36361835
Alignment:
Q  349 gaataaagggtgtctatgtatcattactctaaaataa 385  Q
    ||||||||||||||||||||||||||||||| |||||    
T  36361871 gaataaagggtgtctatgtatcattactctataataa 36361835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 378
Target Start/End: Original strand, 7389538 - 7389571
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactct 378  Q
    ||||||||||||| ||||||||||||||||||||    
T  7389538 atgggaataaaggatgtctatgtatcattactct 7389571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 27118418 - 27118479
Alignment:
Q  138 ttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaat 199  Q
    ||||| ||||||| ||||||||||| || || ||||| |||||||  |||||||||||||||    
T  27118418 ttttaattgccacatgtcatccatccgtaaaaagaactgggtaaacagacagctgcataaat 27118479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 378
Target Start/End: Original strand, 36362168 - 36362197
Alignment:
Q  349 gaataaagggtgtctatgtatcattactct 378  Q
    ||||||||||||||||||||||||||||||    
T  36362168 gaataaagggtgtctatgtatcattactct 36362197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 378
Target Start/End: Original strand, 38837367 - 38837400
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactct 378  Q
    |||| |||||||||||||||||||||||||||||    
T  38837367 atggaaataaagggtgtctatgtatcattactct 38837400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 3e-68; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 378 - 521
Target Start/End: Complemental strand, 6072779 - 6072637
Alignment:
Q  378 taaaataatagatcgtccattcatttcataaagtttatctcctacttcaatttagtctataaactaatttaatacattaattattttcatacaaaagtat 477  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6072779 taaaataatagatcgtccattcatttcataaagtttatctcctacttcaatttagtctataaactaatttaatacattaattattttcat-caaaagtat 6072681  T
Q  478 ccctatttattttacgaatcgaaacatgatcttctcacacaaat 521  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  6072680 ccctatttattttacaaatcgaaacatgatcttctcacacaaat 6072637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 231 - 318
Target Start/End: Complemental strand, 5375473 - 5375386
Alignment:
Q  231 tcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgcatccc 318  Q
    |||||||||||||||||| |||||||||||| ||||||||| |||||||||| ||| ||| |||||||||||||||||||||||||||    
T  5375473 tcatagttaaattttcagagggttcattcaagaaaaagttaaaaaattaggtccaaatatgaaatttgaggggatgcagctgcatccc 5375386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 41763852 - 41763786
Alignment:
Q  152 tgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatggagcaaatctgcactcca 218  Q
    ||||||||||| |||||||||| ||| ||||||||||| ||||||||||||||| ||||||||||||    
T  41763852 tgtcatccatcggtgaagagaatcggataaatggacagttgcataaatggagcagatctgcactcca 41763786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 378
Target Start/End: Original strand, 14548072 - 14548105
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactct 378  Q
    ||||||||||||||||||||||||||||||||||    
T  14548072 atgggaataaagggtgtctatgtatcattactct 14548105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 378
Target Start/End: Complemental strand, 34012242 - 34012213
Alignment:
Q  349 gaataaagggtgtctatgtatcattactct 378  Q
    ||||||||||||||||||||||||||||||    
T  34012242 gaataaagggtgtctatgtatcattactct 34012213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 378
Target Start/End: Complemental strand, 42710244 - 42710211
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactct 378  Q
    ||||||||||||||||||| ||||||||||||||    
T  42710244 atgggaataaagggtgtctgtgtatcattactct 42710211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 377
Target Start/End: Complemental strand, 504067 - 504039
Alignment:
Q  349 gaataaagggtgtctatgtatcattactc 377  Q
    |||||||||||||||||||||||||||||    
T  504067 gaataaagggtgtctatgtatcattactc 504039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 377
Target Start/End: Complemental strand, 23122543 - 23122515
Alignment:
Q  349 gaataaagggtgtctatgtatcattactc 377  Q
    |||||||||||||||||||||||||||||    
T  23122543 gaataaagggtgtctatgtatcattactc 23122515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 6e-63; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 222 - 344
Target Start/End: Original strand, 8756922 - 8757044
Alignment:
Q  222 acagagggctcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgcatccccta 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8756922 acagagggctcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgcatccccta 8757021  T
Q  322 agcccaacgtgggtccgccactg 344  Q
    |||||||||||||||||||||||    
T  8757022 agcccaacgtgggtccgccactg 8757044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 222 - 344
Target Start/End: Original strand, 27984578 - 27984700
Alignment:
Q  222 acagagggctcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgcatccccta 321  Q
    ||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27984578 acagatggttcatagttaaattttcaggggattcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgcatccccta 27984677  T
Q  322 agcccaacgtgggtccgccactg 344  Q
    |||||||| ||||||||||||||    
T  27984678 agcccaacatgggtccgccactg 27984700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 44 - 210
Target Start/End: Complemental strand, 7266775 - 7266610
Alignment:
Q  44 gagaagaggagtagttgctctgattggaggtcagggatggaagtgattctctatggctttcatcaattgatgtgtttaatcctagccatctaatttttag 143  Q
    ||||||||||||||||  | ||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||| |||||||||||||||  | ||||||     
T  7266775 gagaagaggagtagttattgtgattgg-ggtcagggatggaagtgcttctccatggctttcataaattgatgtttttaatcctagccatggagtttttaa 7266677  T
Q  144 ttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatggagcaaatct 210  Q
    |||||| || |||| |||| ||||||||||||||||||||||| || ||||||||||||||| ||||    
T  7266676 ttgccatgtatcattcatcggtgaagagaaccgggtaaatggatagatgcataaatggagcagatct 7266610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 224 - 344
Target Start/End: Complemental strand, 32568951 - 32568834
Alignment:
Q  224 agagggctcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgcatcccctaag 323  Q
    |||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||  |||||||||||||||||||  |    
T  32568951 agagggttcatagttaaattttcagggggttcattcaacacaaagatagaaaattaggtgcaaatataaaatttga--ggatgcagctgcatcccct-gg 32568855  T
Q  324 cccaacgtgggtccgccactg 344  Q
    |||||||||||||||||||||    
T  32568854 cccaacgtgggtccgccactg 32568834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 378
Target Start/End: Original strand, 33644350 - 33644383
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactct 378  Q
    ||||||||||||||||||||||||||||||||||    
T  33644350 atgggaataaagggtgtctatgtatcattactct 33644383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 378
Target Start/End: Complemental strand, 48587051 - 48587018
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactct 378  Q
    ||||||||||||||||||||||||||||||||||    
T  48587051 atgggaataaagggtgtctatgtatcattactct 48587018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 377
Target Start/End: Original strand, 49607564 - 49607596
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactc 377  Q
    |||||||||||||||||||||||||||||||||    
T  49607564 atgggaataaagggtgtctatgtatcattactc 49607596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 377
Target Start/End: Original strand, 53982161 - 53982193
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactc 377  Q
    |||||||||||||||||||||||||||||||||    
T  53982161 atgggaataaagggtgtctatgtatcattactc 53982193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 383
Target Start/End: Complemental strand, 11095313 - 11095279
Alignment:
Q  349 gaataaagggtgtctatgtatcattactctaaaat 383  Q
    |||||||||||||||||||||||||||||| ||||    
T  11095313 gaataaagggtgtctatgtatcattactcttaaat 11095279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 382
Target Start/End: Original strand, 31456839 - 31456876
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactctaaaa 382  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  31456839 atgggaataaagggtgtttatgtatcattactcaaaaa 31456876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 6e-63; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 222 - 344
Target Start/End: Original strand, 40864797 - 40864919
Alignment:
Q  222 acagagggctcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgcatccccta 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40864797 acagagggctcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgcatccccta 40864896  T
Q  322 agcccaacgtgggtccgccactg 344  Q
    |||||||||||||||||||||||    
T  40864897 agcccaacgtgggtccgccactg 40864919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 379
Target Start/End: Complemental strand, 28381605 - 28381571
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactcta 379  Q
    |||||||||||||||||||||||||||||||||||    
T  28381605 atgggaataaagggtgtctatgtatcattactcta 28381571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 378
Target Start/End: Complemental strand, 7465685 - 7465652
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactct 378  Q
    ||||||||||||||||||||||||||||||||||    
T  7465685 atgggaataaagggtgtctatgtatcattactct 7465652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 382
Target Start/End: Original strand, 17473170 - 17473207
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactctaaaa 382  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  17473170 atgggaataaagggtgtctatgtatcattactcaaaaa 17473207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 377
Target Start/End: Complemental strand, 5574450 - 5574418
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactc 377  Q
    |||||||||||||||||||||||||||||||||    
T  5574450 atgggaataaagggtgtctatgtatcattactc 5574418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 377
Target Start/End: Original strand, 13438493 - 13438525
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactc 377  Q
    |||||||||||||||||||||||||||||||||    
T  13438493 atgggaataaagggtgtctatgtatcattactc 13438525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 377
Target Start/End: Original strand, 28863605 - 28863637
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactc 377  Q
    |||||||||||||||||||||||||||||||||    
T  28863605 atgggaataaagggtgtctatgtatcattactc 28863637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 378
Target Start/End: Complemental strand, 19930770 - 19930737
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactct 378  Q
    ||||||||||| ||||||||||||||||||||||    
T  19930770 atgggaataaaaggtgtctatgtatcattactct 19930737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 377
Target Start/End: Complemental strand, 10249328 - 10249300
Alignment:
Q  349 gaataaagggtgtctatgtatcattactc 377  Q
    |||||||||||||||||||||||||||||    
T  10249328 gaataaagggtgtctatgtatcattactc 10249300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 3e-62; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 68 - 205
Target Start/End: Complemental strand, 32239578 - 32239441
Alignment:
Q  68 tggaggtcagggatggaagtgattctctatggctttcatcaattgatgtgtttaatcctagccatctaatttttagttgccacgtgtcatccatcagtga 167  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32239578 tggaggtcagagatggaagtgattctctatggctttcatcaattgatgtgtttaatcctagccatctgatttttagttgccacgtgtcatccatcagtga 32239479  T
Q  168 agagaaccgggtaaatggacagctgcataaatggagca 205  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  32239478 agagaactgagtaaatggacagctgcataaatggagca 32239441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 222 - 344
Target Start/End: Original strand, 20030465 - 20030587
Alignment:
Q  222 acagagggctcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgcatccccta 321  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  20030465 acagagggttcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgcatcccctg 20030564  T
Q  322 agcccaacgtgggtccgccactg 344  Q
    |||||||||||||||||||||||    
T  20030565 agcccaacgtgggtccgccactg 20030587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 118 - 216
Target Start/End: Original strand, 32240033 - 32240131
Alignment:
Q  118 tttaatcctagccatctaatttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatggagcaaatctgcactc 216  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32240033 tttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatggagcagatctgcactc 32240131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 32239619 - 32239574
Alignment:
Q  1 aagagaaatagttggatatggttggggttagcgatggagaatggag 46  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  32239619 aagagaaatagttggatatggttggggttagcgatgaagaatggag 32239574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 382
Target Start/End: Original strand, 26274579 - 26274616
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactctaaaa 382  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26274579 atgggaataaagggtgtctatgtatcattactctaaaa 26274616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 51165436 - 51165517
Alignment:
Q  137 tttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatggagcaaatctgcactcca 218  Q
    |||||| ||||||||||||||  ||| ||||| |||||||||||| ||||||| |  | |||||||||| ||||||||||||    
T  51165436 tttttaattgccacgtgtcatgtatctgtgaaaagaaccgggtaactggacagatataaaaatggagcagatctgcactcca 51165517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 379
Target Start/End: Complemental strand, 27564685 - 27564651
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactcta 379  Q
    |||||||||||||||||||||||||||||||||||    
T  27564685 atgggaataaagggtgtctatgtatcattactcta 27564651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 377
Target Start/End: Complemental strand, 48716232 - 48716200
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactc 377  Q
    |||||||||||||||||||||||||||||||||    
T  48716232 atgggaataaagggtgtctatgtatcattactc 48716200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 376
Target Start/End: Original strand, 37649348 - 37649379
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattact 376  Q
    ||||||||||||||||||||||||||||||||    
T  37649348 atgggaataaagggtgtctatgtatcattact 37649379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 377
Target Start/End: Original strand, 41758959 - 41758987
Alignment:
Q  349 gaataaagggtgtctatgtatcattactc 377  Q
    |||||||||||||||||||||||||||||    
T  41758959 gaataaagggtgtctatgtatcattactc 41758987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 377
Target Start/End: Complemental strand, 47452270 - 47452238
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactc 377  Q
    |||||||||||| ||||||||||||||||||||    
T  47452270 atgggaataaagagtgtctatgtatcattactc 47452238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 378
Target Start/End: Original strand, 32869828 - 32869861
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactct 378  Q
    ||||||||||||||||||||||||||||||||||    
T  32869828 atgggaataaagggtgtctatgtatcattactct 32869861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 380
Target Start/End: Complemental strand, 6209414 - 6209381
Alignment:
Q  347 gggaataaagggtgtctatgtatcattactctaa 380  Q
    ||||||||||||| ||||||||||||||||||||    
T  6209414 gggaataaagggtatctatgtatcattactctaa 6209381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 378
Target Start/End: Original strand, 11427772 - 11427801
Alignment:
Q  349 gaataaagggtgtctatgtatcattactct 378  Q
    ||||||||||||||||||||||||||||||    
T  11427772 gaataaagggtgtctatgtatcattactct 11427801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 378
Target Start/End: Original strand, 29857977 - 29858010
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactct 378  Q
    ||||||||||| ||||||||||||||||||||||    
T  29857977 atgggaataaatggtgtctatgtatcattactct 29858010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 378
Target Start/End: Original strand, 2740424 - 2740457
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactct 378  Q
    ||||||||||||||||||||||||||||||||||    
T  2740424 atgggaataaagggtgtctatgtatcattactct 2740457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 377
Target Start/End: Original strand, 14831964 - 14831996
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactc 377  Q
    |||||||||||||||||||||||||||||||||    
T  14831964 atgggaataaagggtgtctatgtatcattactc 14831996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 378
Target Start/End: Complemental strand, 16115278 - 16115249
Alignment:
Q  349 gaataaagggtgtctatgtatcattactct 378  Q
    ||||||||||||||||||||||||||||||    
T  16115278 gaataaagggtgtctatgtatcattactct 16115249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 378
Target Start/End: Complemental strand, 33149584 - 33149555
Alignment:
Q  349 gaataaagggtgtctatgtatcattactct 378  Q
    ||||||||||||||||||||||||||||||    
T  33149584 gaataaagggtgtctatgtatcattactct 33149555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 378
Target Start/End: Original strand, 40145561 - 40145590
Alignment:
Q  349 gaataaagggtgtctatgtatcattactct 378  Q
    ||||||||||||||||||||||||||||||    
T  40145561 gaataaagggtgtctatgtatcattactct 40145590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 377
Target Start/End: Original strand, 16822387 - 16822419
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactc 377  Q
    ||||||||||||||||||| |||||||||||||    
T  16822387 atgggaataaagggtgtctgtgtatcattactc 16822419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 378
Target Start/End: Complemental strand, 18520829 - 18520801
Alignment:
Q  350 aataaagggtgtctatgtatcattactct 378  Q
    |||||||||||||||||||||||||||||    
T  18520829 aataaagggtgtctatgtatcattactct 18520801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 378
Target Start/End: Original strand, 4179 - 4212
Alignment:
Q  345 atgggaataaagggtgtctatgtatcattactct 378  Q
    ||||||||||| ||||||||||||||||||||||    
T  4179 atgggaataaatggtgtctatgtatcattactct 4212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University