View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6282_high_6 (Length: 364)
Name: NF6282_high_6
Description: NF6282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6282_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 43558936 - 43558594
Alignment:
| Q |
18 |
catggagttaacaaactatcctctaatattttcatacttgacataaattagtctctctgttgattcaaaataaaaacgtgagagaaattaatttgtgtct |
117 |
Q |
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| T |
43558936 |
catggagttaacaaactatcctctaatattttcatacttgacataaattagtctctctgttgattcaaaataaaaacgtgagagaaattaatttgtgtct |
43558837 |
T |
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| Q |
118 |
tgtttgaaaattcatgttttagtttgagccacnnnnnnnnn----ttgtgagggatcggaccaaatttaatctttagttttaaatttaaatagttttaac |
213 |
Q |
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| T |
43558836 |
tgtttgaaaattcatgttttagtttgagccacaaaaaaataaaaattgtgagggatcggaccaaatttaatctttagttttaaatttaaatagttttaac |
43558737 |
T |
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| Q |
214 |
tcatttgaatcttggatgaaatgaaaatcattttaactaattatatattcttgatagttgatgaaattagcaagaaggcaactgaaaggtaggtaagtca |
313 |
Q |
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| T |
43558736 |
tcatttgaatcttggatgaaatgaaaatcattttaactaattatatattcttgatagttgatgaaattagcaagaaggcaagtgaaaggtaggtaagtca |
43558637 |
T |
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| Q |
314 |
tgtcttcacccattacttgaagttgggttagcttgatgatgtc |
356 |
Q |
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| T |
43558636 |
tgtcttcacccattacttgaagttgggttagcttgatcatgtc |
43558594 |
T |
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