View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6282_low_1 (Length: 650)
Name: NF6282_low_1
Description: NF6282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6282_low_1 |
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| [»] scaffold0126 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 309
Target Start/End: Original strand, 17595463 - 17595752
Alignment:
| Q |
20 |
tatttggcaccattgttttttgcaagtataggtttgagaagtaatacctattttctttatttgtctcttagtcaaaatatgttgttggtttgtgttatca |
119 |
Q |
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| T |
17595463 |
tatttggcaccattgttttttgcaagtataggtttgagaagtaatacctattttctttatttgtctcttagtcaaaatatgttgttggtttgtgttatca |
17595562 |
T |
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| Q |
120 |
tgatcttgttgatttcttccaagattgtgagcactgtagttgctacaagtatatatggaatgtctcttagagatagtatggctcttggagtgctcatgaa |
219 |
Q |
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| T |
17595563 |
tgatcttgttgatttcttccaagattgtgagcactgtagttgctacaagtatatatggaatgtctcttagagatagtatggctcttggagtgctcatgaa |
17595662 |
T |
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| Q |
220 |
tactaaaggtgtcttgtcattgattatactaaacattggatgggatagaaaggtattattcatttacttgtatatacacattattgttac |
309 |
Q |
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| T |
17595663 |
tacaaaaggtgtcttatcattgattgtactaaacattggatgggatagaaaggtattattcatttctttgtatatatacattattgttac |
17595752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 326 - 644
Target Start/End: Original strand, 17595740 - 17596060
Alignment:
| Q |
326 |
acattattgttacttgataaaaccttttgttaccctttgagcttcatgtgcttttnnnnnnnnttacaatgcattcattagcaaaacaaaaaatcaataa |
425 |
Q |
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| T |
17595740 |
acattattgttacttgataaaaccttttgttaccctttgagcttcatgtgctttttaaaaaaattacaatgcattcattagcaaaacaaaaaatcaataa |
17595839 |
T |
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| Q |
426 |
caagggattttattttaaagaaaattatttttgtcgtcacttaatttaatttataccctagaaatctacgtactttc-nnnnnnnaaatagattcaaaga |
524 |
Q |
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| T |
17595840 |
caagggattttattttaaacaaaattattttcgtcgtcccttaacttgatttatgccctagaaatctacgtactttcttttttttaaatagattcaaaga |
17595939 |
T |
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| Q |
525 |
gcatcaattcaatataaacc-nnnnnnngtagaaaatagaaaataggaactataccaaaacttttttaaaaggtgttaaatcttaaattaggcattccca |
623 |
Q |
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| T |
17595940 |
gcatcaattcaatataaaccaaaaaagagtagaaaatagaaaatagaaactataccaaaacctttttaaaaggtgttaaatctgaaattaggcattccca |
17596039 |
T |
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| Q |
624 |
acttatttccagtataatcta |
644 |
Q |
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| T |
17596040 |
acttatttccagtgtaatcta |
17596060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 572 - 630
Target Start/End: Original strand, 34427032 - 34427090
Alignment:
| Q |
572 |
actataccaaaacttttttaaaaggtgttaaatcttaaattaggcattcccaacttatt |
630 |
Q |
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|||| |||||||||||||||||||||||||||| | ||||| || ||||||||| |||| |
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| T |
34427032 |
actaaaccaaaacttttttaaaaggtgttaaatttgaaattgggtattcccaacctatt |
34427090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 572 - 612
Target Start/End: Original strand, 10194016 - 10194056
Alignment:
| Q |
572 |
actataccaaaacttttttaaaaggtgttaaatcttaaatt |
612 |
Q |
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| T |
10194016 |
actataccaaaaccttttcaaaaggtgttaaatctgaaatt |
10194056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 572 - 625
Target Start/End: Original strand, 41517773 - 41517826
Alignment:
| Q |
572 |
actataccaaaacttttttaaaaggtgttaaatcttaaattaggcattcccaac |
625 |
Q |
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| T |
41517773 |
actataccaaaaccttttcaaaagttgcaaaatctgaaattaggcattcccaac |
41517826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 577 - 630
Target Start/End: Original strand, 19280593 - 19280646
Alignment:
| Q |
577 |
accaaaacttttttaaaaggtgttaaatcttaaattaggcattcccaacttatt |
630 |
Q |
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| T |
19280593 |
accaaaacctttttaaaaggtgttaaacctgaaattgggcatacccaacatatt |
19280646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 577 - 630
Target Start/End: Complemental strand, 45992488 - 45992435
Alignment:
| Q |
577 |
accaaaacttttttaaaaggtgttaaatcttaaattaggcattcccaacttatt |
630 |
Q |
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| T |
45992488 |
accaaaaccttttcaataggtgttaaatctgaaattgggcatacccaacttatt |
45992435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0126 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0126
Description:
Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 510 - 542
Target Start/End: Complemental strand, 44127 - 44095
Alignment:
| Q |
510 |
aaatagattcaaagagcatcaattcaatataaa |
542 |
Q |
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| T |
44127 |
aaatagatgcaaagagcatcaattcaatataaa |
44095 |
T |
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