View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6282_low_2 (Length: 603)

Name: NF6282_low_2
Description: NF6282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6282_low_2
NF6282_low_2
[»] chr7 (17 HSPs)
chr7 (137-596)||(46644288-46644749)
chr7 (1-96)||(46644755-46644848)
chr7 (279-334)||(46628705-46628760)
chr7 (101-185)||(4017808-4017892)
chr7 (131-182)||(11831423-11831474)
chr7 (132-182)||(9408351-9408401)
chr7 (279-332)||(46616521-46616574)
chr7 (138-182)||(15902820-15902864)
chr7 (147-185)||(23751907-23751945)
chr7 (132-182)||(27945033-27945083)
chr7 (147-185)||(29812678-29812716)
chr7 (140-185)||(4909151-4909196)
chr7 (132-173)||(11072290-11072331)
chr7 (140-185)||(23128675-23128720)
chr7 (139-203)||(5235985-5236049)
chr7 (132-180)||(8234138-8234186)
chr7 (462-490)||(46617192-46617220)
[»] chr3 (11 HSPs)
chr3 (131-185)||(15864824-15864878)
chr3 (132-182)||(29508436-29508486)
chr3 (130-203)||(16192746-16192819)
chr3 (149-180)||(21785602-21785633)
chr3 (121-182)||(10268503-10268564)
chr3 (132-185)||(25074781-25074834)
chr3 (141-173)||(10504929-10504961)
chr3 (132-184)||(10954944-10954996)
chr3 (129-185)||(14223867-14223923)
chr3 (130-182)||(25326416-25326468)
chr3 (138-182)||(55401073-55401117)
[»] chr1 (12 HSPs)
chr1 (135-182)||(26837759-26837806)
chr1 (132-185)||(16812535-16812588)
chr1 (132-181)||(17754303-17754352)
chr1 (121-179)||(9629920-9629978)
chr1 (148-198)||(16927186-16927236)
chr1 (132-182)||(22881633-22881683)
chr1 (135-181)||(23440005-23440051)
chr1 (132-182)||(34298428-34298478)
chr1 (148-182)||(46348400-46348434)
chr1 (135-184)||(17080896-17080945)
chr1 (133-181)||(23621964-23622012)
chr1 (138-182)||(41877487-41877531)
[»] chr8 (11 HSPs)
chr8 (135-185)||(13845229-13845279)
chr8 (132-180)||(41141650-41141698)
chr8 (135-185)||(13009507-13009557)
chr8 (123-185)||(14513188-14513250)
chr8 (132-182)||(15816146-15816196)
chr8 (141-199)||(18646173-18646231)
chr8 (147-185)||(39820436-39820474)
chr8 (135-185)||(40063946-40063996)
chr8 (129-182)||(8343305-8343358)
chr8 (129-182)||(39954296-39954349)
chr8 (138-182)||(7658461-7658505)
[»] chr6 (11 HSPs)
chr6 (116-182)||(7938092-7938158)
chr6 (132-185)||(10842524-10842577)
chr6 (133-185)||(6389736-6389788)
chr6 (148-182)||(6327535-6327569)
chr6 (116-182)||(7977847-7977913)
chr6 (148-182)||(24614418-24614452)
chr6 (129-182)||(2153904-2153957)
chr6 (101-182)||(10770691-10770771)
chr6 (132-185)||(19602195-19602248)
chr6 (228-264)||(34894969-34895005)
chr6 (141-185)||(34895048-34895092)
[»] chr5 (8 HSPs)
chr5 (135-185)||(39696013-39696063)
chr5 (137-185)||(2577194-2577242)
chr5 (132-191)||(12927646-12927705)
chr5 (147-185)||(43554528-43554566)
chr5 (140-185)||(4344742-4344787)
chr5 (121-182)||(33035818-33035879)
chr5 (129-182)||(35017026-35017079)
chr5 (132-208)||(15410439-15410515)
[»] chr4 (13 HSPs)
chr4 (132-182)||(2361992-2362042)
chr4 (141-183)||(50848319-50848361)
chr4 (116-185)||(7424646-7424715)
chr4 (135-184)||(35212742-35212791)
chr4 (132-182)||(12895291-12895341)
chr4 (148-182)||(30838218-30838252)
chr4 (129-182)||(31800495-31800548)
chr4 (138-203)||(40742589-40742654)
chr4 (129-185)||(7012055-7012111)
chr4 (138-182)||(21539884-21539928)
chr4 (130-182)||(24343497-24343549)
chr4 (149-185)||(49659537-49659573)
chr4 (141-185)||(55941017-55941061)
[»] scaffold1528 (1 HSPs)
scaffold1528 (132-181)||(1027-1076)
[»] scaffold0022 (1 HSPs)
scaffold0022 (132-191)||(90835-90894)
[»] chr2 (10 HSPs)
chr2 (130-208)||(17070932-17071009)
chr2 (130-208)||(17087931-17088008)
chr2 (116-182)||(18841030-18841096)
chr2 (148-182)||(20539691-20539725)
chr2 (147-185)||(23354666-23354704)
chr2 (135-185)||(25544476-25544526)
chr2 (148-182)||(40361771-40361805)
chr2 (132-185)||(37986771-37986824)
chr2 (138-182)||(30335415-30335459)
chr2 (141-209)||(33861931-33861999)


Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 137 - 596
Target Start/End: Complemental strand, 46644749 - 46644288
Alignment:
Q  137 accgacaccaataataatttgaaaaaattatataatttagtgtaatcatctatgttgttgtcgtgtcaatgtcgcacaccgacgcgtacctgggacacac 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  46644749 accgacaccaataataatttgaaaaaattatataatttagtgtaatcatctatgttgttgttgcgtcaatgtcgcacaccgacgcgtacctgggacacac 46644650  T
Q  237 ctgatatgtggagtgtccgtgcttcataatagtttttatgtgag--------gtaaccatgttgaagtaagggttttcatttttcagatcatattgccaa 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46644649 ctgatatgtggagtgtccgtgcttcataatagtttttatgtgagttgtttaggtaaccatgttgaagtaagggttttcatttttcagatcatattgccaa 46644550  T
Q  329 tttttgtattctgatatcctgagttcatcgatagtttttaatgtgaaaacatttgagatctaatattttgttagataattaataggcaaagggttgtaaa 428  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46644549 tttttgtattctgatatcctgagttcatcgatagttgttaatgtgaaaacatttgagatctaatattttgttagataattaataggcaaagggttgtaaa 46644450  T
Q  429 gttagaaagaaaacatggtatcagttccttggcatagttggatactcatagttttgaaatctgag-tgcttcattaagtatgaataagtagtgagtaata 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46644449 gttagaaagaaaacatggtatcagttccttggcatagttggatactcatagttttgaaatctgagttgcttcattaagtatgaataagtagtgagtaata 46644350  T
Q  528 ctgtatattattacttttatgcttggttacaacttacaactcaagcttgaagtatgttcttgatgatgt 596  Q
    |||| |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  46644349 ctgtttattattacttttatgcttgg-------ttacaactcaagcttgaagtatgttcttgatgatgt 46644288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 46644848 - 46644755
Alignment:
Q  1 cttttaatgttttcccttcctcattgtattgaatctgtgtcaacaatcgtgtctttatcnnnnnnnctttacatattttggtttaatgacttatat 96  Q
    ||||||||||||||||||||||||||||||||||||||||||| |    | ||||||||        |||||||||||||||||||||||||||||    
T  46644848 cttttaatgttttcccttcctcattgtattgaatctgtgtcaaga--gatatctttatcaaaaaatgtttacatattttggtttaatgacttatat 46644755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 46628705 - 46628760
Alignment:
Q  279 aggtaaccatgttgaagtaagggttttcatttttcagatcatattgccaatttttg 334  Q
    |||||||||||||||||| |||||||| || ||||||||| |||||||||||||||    
T  46628705 aggtaaccatgttgaagtgagggttttgatgtttcagatcgtattgccaatttttg 46628760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 4017892 - 4017808
Alignment:
Q  101 aagcacagatacggtacaccacatggagaccgacacaccgacaccaataataatttgaaaaaattatataatttagtgtaatcat 185  Q
    ||||||||| || | |||| ||| ||| |||||||| |||||||  |||||||||||| ||||  ||||||||||||||||||||    
T  4017892 aagcacagacactggacacgacacggacaccgacacgccgacacggataataatttgagaaaacgatataatttagtgtaatcat 4017808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 11831423 - 11831474
Alignment:
Q  131 cgacacaccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    ||||||| |||||| | ||||||||||||||||| |||||||||||||||||    
T  11831423 cgacacatcgacacaactaataatttgaaaaaatcatataatttagtgtaat 11831474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 9408401 - 9408351
Alignment:
Q  132 gacacaccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    ||||||||||||| | ||||||||||||||||| | |||||||||||||||    
T  9408401 gacacaccgacacaattaataatttgaaaaaatcacataatttagtgtaat 9408351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 46616521 - 46616574
Alignment:
Q  279 aggtaaccatgttgaagtaagggttttcatttttcagatcatattgccaatttt 332  Q
    |||||||| ||||||||| |||||||| || ||||||||| |||||||||||||    
T  46616521 aggtaaccgtgttgaagtgagggttttgatgtttcagatcgtattgccaatttt 46616574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 15902820 - 15902864
Alignment:
Q  138 ccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    ||||||||||||||||||||| ||||| | |||||||||||||||    
T  15902820 ccgacaccaataataatttgataaaatcacataatttagtgtaat 15902864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 23751907 - 23751945
Alignment:
Q  147 ataataatttgaaaaaattatataatttagtgtaatcat 185  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  23751907 ataataatttgataaaatgatataatttagtgtaatcat 23751945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 27945033 - 27945083
Alignment:
Q  132 gacacaccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    ||||| ||||||||| ||||||||||| ||||||| |||||| ||||||||    
T  27945033 gacacgccgacaccactaataatttgagaaaattacataattcagtgtaat 27945083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 29812716 - 29812678
Alignment:
Q  147 ataataatttgaaaaaattatataatttagtgtaatcat 185  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  29812716 ataataatttgagaaaatgatataatttagtgtaatcat 29812678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 4909151 - 4909196
Alignment:
Q  140 gacaccaataataatttgaaaaaattatataatttagtgtaatcat 185  Q
    ||||||||||||||||||| ||||||| |||||| | |||||||||    
T  4909151 gacaccaataataatttgagaaaattacataattcattgtaatcat 4909196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 11072290 - 11072331
Alignment:
Q  132 gacacaccgacaccaataataatttgaaaaaattatataatt 173  Q
    ||||| |||||||| ||||||||||||||||| |||||||||    
T  11072290 gacacgccgacaccgataataatttgaaaaaaatatataatt 11072331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 23128720 - 23128675
Alignment:
Q  140 gacaccaataataatttgaaaaaattatataatttagtgtaatcat 185  Q
    ||||||||||||||||||| ||||  |||||||| |||||||||||    
T  23128720 gacaccaataataatttgagaaaaccatataattcagtgtaatcat 23128675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 5235985 - 5236049
Alignment:
Q  139 cgacaccaataataatttgaaaaaattatataatttagtgtaatcatctatgttgttgtcgtgtc 203  Q
    |||||||  ||||||||| | ||||||||||||||||||||||| || ||| | | |||||||||    
T  5235985 cgacaccgctaataatttaagaaaattatataatttagtgtaattatatatatcggtgtcgtgtc 5236049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 8234138 - 8234186
Alignment:
Q  132 gacacaccgacaccaataataatttgaaaaaattatataatttagtgta 180  Q
    ||||||||||||| | ||||||||||||||||| | |||||| ||||||    
T  8234138 gacacaccgacacaactaataatttgaaaaaataacataattcagtgta 8234186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 462 - 490
Target Start/End: Original strand, 46617192 - 46617220
Alignment:
Q  462 atagttggatactcatagttttgaaatct 490  Q
    |||||||||||||||||||||||||||||    
T  46617192 atagttggatactcatagttttgaaatct 46617220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 15864824 - 15864878
Alignment:
Q  131 cgacacaccgacaccaataataatttgaaaaaattatataatttagtgtaatcat 185  Q
    |||||| |||||||  |||||||||||||||||| ||||||||||||||||||||    
T  15864824 cgacacgccgacacggataataatttgaaaaaatgatataatttagtgtaatcat 15864878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 29508436 - 29508486
Alignment:
Q  132 gacacaccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    |||||||||| |||| ||||||||||||||||| |||||||| ||||||||    
T  29508436 gacacaccgataccactaataatttgaaaaaatcatataattcagtgtaat 29508486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 16192819 - 16192746
Alignment:
Q  130 ccgacacaccgacaccaataataatttgaaaaaattatataatttagtgtaatcatctatgttgttgtcgtgtc 203  Q
    ||||||||||||||||  ||||||||||| ||||| | |||||| |||||||| || | ||||| |||||||||    
T  16192819 ccgacacaccgacaccgttaataatttgagaaaataacataattcagtgtaattatatgtgttgatgtcgtgtc 16192746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 180
Target Start/End: Original strand, 21785602 - 21785633
Alignment:
Q  149 aataatttgaaaaaattatataatttagtgta 180  Q
    ||||||||||||||||||||||||||||||||    
T  21785602 aataatttgaaaaaattatataatttagtgta 21785633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 182
Target Start/End: Complemental strand, 10268564 - 10268503
Alignment:
Q  121 acatggagaccgacacaccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    ||||||| || ||||| |||||||   ||||||||||||||||| | |||||||||||||||    
T  10268564 acatggacactgacacgccgacacagttaataatttgaaaaaatcacataatttagtgtaat 10268503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 25074781 - 25074834
Alignment:
Q  132 gacacaccgacaccaataataatttgaaaaaattatataatttagtgtaatcat 185  Q
    ||||| |||||||| |||||||||||| ||||| | |||||| |||||||||||    
T  25074781 gacacgccgacaccgataataatttgagaaaatgacataattgagtgtaatcat 25074834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 10504961 - 10504929
Alignment:
Q  141 acaccaataataatttgaaaaaattatataatt 173  Q
    ||||| |||||||||||||||||||||||||||    
T  10504961 acaccgataataatttgaaaaaattatataatt 10504929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 10954944 - 10954996
Alignment:
Q  132 gacacaccgacaccaataataatttgaaaaaattatataatttagtgtaatca 184  Q
    ||||| ||||||| | ||||||||||||||||| | |||||| ||||||||||    
T  10954944 gacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaatca 10954996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 14223923 - 14223867
Alignment:
Q  129 accgacacaccgacaccaataataatttgaaaaaattatataatttagtgtaatcat 185  Q
    |||||||| |||||||  |||||||||||| ||||  ||||||||||||||| ||||    
T  14223923 accgacacgccgacacagataataatttgagaaaacgatataatttagtgtattcat 14223867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 25326416 - 25326468
Alignment:
Q  130 ccgacacaccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    |||| ||||| ||||  |||||||||| ||||||| |||||||||||||||||    
T  25326416 ccgatacaccaacacagataataatttaaaaaaataatataatttagtgtaat 25326468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 55401073 - 55401117
Alignment:
Q  138 ccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    ||||||| | ||||||||||||||||| | |||||||||||||||    
T  55401073 ccgacacaactaataatttgaaaaaatcacataatttagtgtaat 55401117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 26837806 - 26837759
Alignment:
Q  135 acaccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    |||| |||| |||||||||||||||||||| |||||||||||||||||    
T  26837806 acactgacatcaataataatttgaaaaaataatataatttagtgtaat 26837759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 16812535 - 16812588
Alignment:
Q  132 gacacaccgacaccaataataatttgaaaaaattatataatttagtgtaatcat 185  Q
    ||||||||||||||||||||||||||| ||||| | |||||| |||| ||||||    
T  16812535 gacacaccgacaccaataataatttgacaaaatcacataattcagtggaatcat 16812588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 17754303 - 17754352
Alignment:
Q  132 gacacaccgacaccaataataatttgaaaaaattatataatttagtgtaa 181  Q
    ||||||||||||||  ||||||||||||||||||| |||||| |||||||    
T  17754303 gacacaccgacaccgctaataatttgaaaaaattacataattcagtgtaa 17754352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 9629978 - 9629920
Alignment:
Q  121 acatggagaccgacacaccgacaccaataataatttgaaaaaattatataatttagtgt 179  Q
    ||||||| ||||||||| |||||||  ||||||||||| ||||| |||||||| |||||    
T  9629978 acatggacaccgacacatcgacaccgctaataatttgataaaatcatataattcagtgt 9629920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 16927236 - 16927186
Alignment:
Q  148 taataatttgaaaaaattatataatttagtgtaatcatctatgttgttgtc 198  Q
    ||||||||||||||||| |||||||| |||||||| || ||||||| ||||    
T  16927236 taataatttgaaaaaatcatataattcagtgtaattatatatgttggtgtc 16927186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 22881683 - 22881633
Alignment:
Q  132 gacacaccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    ||||| ||||||| | ||||||||||||||||| | |||||||||||||||    
T  22881683 gacacgccgacacaactaataatttgaaaaaatcacataatttagtgtaat 22881633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 23440005 - 23440051
Alignment:
Q  135 acaccgacaccaataataatttgaaaaaattatataatttagtgtaa 181  Q
    ||||||||||  |||||||||||| ||||| ||||||||||||||||    
T  23440005 acaccgacacgtataataatttgagaaaatgatataatttagtgtaa 23440051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 34298428 - 34298478
Alignment:
Q  132 gacacaccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    ||||||||||||||| ||||||||||| ||||| | |||||| ||||||||    
T  34298428 gacacaccgacaccactaataatttgagaaaatcacataattcagtgtaat 34298478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 46348434 - 46348400
Alignment:
Q  148 taataatttgaaaaaattatataatttagtgtaat 182  Q
    ||||||||||||||||| |||||||||||||||||    
T  46348434 taataatttgaaaaaatcatataatttagtgtaat 46348400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 17080945 - 17080896
Alignment:
Q  135 acaccgacaccaataataatttgaaaaaattatataatttagtgtaatca 184  Q
    |||||||||||||||||||||||| ||||| | |||||| | ||||||||    
T  17080945 acaccgacaccaataataatttgagaaaataacataattgaatgtaatca 17080896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 23621964 - 23622012
Alignment:
Q  133 acacaccgacaccaataataatttgaaaaaattatataatttagtgtaa 181  Q
    ||||||||||||   ||||||||||||||||||||||| || |||||||    
T  23621964 acacaccgacacagctaataatttgaaaaaattatatacttcagtgtaa 23622012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 41877531 - 41877487
Alignment:
Q  138 ccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    ||||||||  ||||||||||| ||||||| |||||||||||||||    
T  41877531 ccgacaccgctaataatttgagaaaattacataatttagtgtaat 41877487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 13845229 - 13845279
Alignment:
Q  135 acaccgacaccaataataatttgaaaaaattatataatttagtgtaatcat 185  Q
    |||||||||| ||||||||||||| ||||| ||||||||||| ||||||||    
T  13845229 acaccgacacaaataataatttgagaaaatgatataatttagagtaatcat 13845279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 41141698 - 41141650
Alignment:
Q  132 gacacaccgacaccaataataatttgaaaaaattatataatttagtgta 180  Q
    |||||| |||||||||||||||||||||||||| |||| ||||| ||||    
T  41141698 gacacatcgacaccaataataatttgaaaaaatgatatgatttaatgta 41141650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 13009557 - 13009507
Alignment:
Q  135 acaccgacaccaataataatttgaaaaaattatataatttagtgtaatcat 185  Q
    ||||||||||  |||||||||||| ||||  ||||||||||||||||||||    
T  13009557 acaccgacacggataataatttgagaaaacaatataatttagtgtaatcat 13009507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 14513250 - 14513188
Alignment:
Q  123 atggagaccgacacaccgacaccaataataatttgaaaaaattatataatttagtgtaatcat 185  Q
    |||||||||||||| || |||  ||||||||||||| ||||||| |||||| || ||||||||    
T  14513250 atggagaccgacacgccaacaaaaataataatttgagaaaattacataattcagcgtaatcat 14513188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 15816196 - 15816146
Alignment:
Q  132 gacacaccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    ||||| ||||||| | ||||||||||||||||| | |||||||||||||||    
T  15816196 gacacgccgacacaactaataatttgaaaaaatcacataatttagtgtaat 15816146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 18646173 - 18646231
Alignment:
Q  141 acaccaataataatttgaaaaaattatataatttagtgtaatcatctatgttgttgtcg 199  Q
    |||||| ||||||||||||||||| | || ||| ||||||||||| ||||||| |||||    
T  18646173 acaccagtaataatttgaaaaaatgacatgattcagtgtaatcatatatgttggtgtcg 18646231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 39820436 - 39820474
Alignment:
Q  147 ataataatttgaaaaaattatataatttagtgtaatcat 185  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  39820436 ataataatttgagaaaatgatataatttagtgtaatcat 39820474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 40063946 - 40063996
Alignment:
Q  135 acaccgacaccaataataatttgaaaaaattatataatttagtgtaatcat 185  Q
    |||||||||||||||||||||||| ||||| | |||||| | |||||||||    
T  40063946 acaccgacaccaataataatttgagaaaatgacataattcattgtaatcat 40063996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 8343305 - 8343358
Alignment:
Q  129 accgacacaccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    |||||||||||||||    ||||||||||||||||| | |||||||||||||||    
T  8343305 accgacacaccgacatagctaataatttgaaaaaatcacataatttagtgtaat 8343358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 39954349 - 39954296
Alignment:
Q  129 accgacacaccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    |||||||| ||||||||  ||||||||||| ||||| | |||||||||||||||    
T  39954349 accgacacgccgacaccgctaataatttgagaaaatcacataatttagtgtaat 39954296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 7658461 - 7658505
Alignment:
Q  138 ccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    ||||||||| ||||||||||| ||||||| |||||| ||||||||    
T  7658461 ccgacaccactaataatttgagaaaattacataattcagtgtaat 7658505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 7938092 - 7938158
Alignment:
Q  116 acaccacatggagaccgacacaccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    |||| ||||||| || ||||| |||||||   ||||||||||||||||| |||||||||||||||||    
T  7938092 acacgacatggacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaat 7938158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 10842524 - 10842577
Alignment:
Q  132 gacacaccgacaccaataataatttgaaaaaattatataatttagtgtaatcat 185  Q
    ||||| ||||||||  ||||||||||||||||| | ||||||||||||||||||    
T  10842524 gacacgccgacaccgctaataatttgaaaaaatcacataatttagtgtaatcat 10842577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 6389736 - 6389788
Alignment:
Q  133 acacaccgacaccaataataatttgaaaaaattatataatttagtgtaatcat 185  Q
    |||| |||||||  |||||||||||| ||||| ||||||||||||||||||||    
T  6389736 acacgccgacacggataataatttgagaaaatgatataatttagtgtaatcat 6389788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 6327569 - 6327535
Alignment:
Q  148 taataatttgaaaaaattatataatttagtgtaat 182  Q
    |||||||||||||||||||||||||| ||||||||    
T  6327569 taataatttgaaaaaattatataattaagtgtaat 6327535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 182
Target Start/End: Complemental strand, 7977913 - 7977847
Alignment:
Q  116 acaccacatggagaccgacacaccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    |||| ||||||| || ||||| |||||||   ||||||||||||||||||| |||||| ||||||||    
T  7977913 acacgacatggatactgacacgccgacacagctaataatttgaaaaaattacataattcagtgtaat 7977847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 24614418 - 24614452
Alignment:
Q  148 taataatttgaaaaaattatataatttagtgtaat 182  Q
    ||||||||| |||||||||||||||||||||||||    
T  24614418 taataatttaaaaaaattatataatttagtgtaat 24614452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 2153957 - 2153904
Alignment:
Q  129 accgacacaccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    |||||||| ||||||| || |||||||| | ||||| |||||||||||||||||    
T  2153957 accgacacgccgacacgaacaataatttaagaaaatgatataatttagtgtaat 2153904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 182
Target Start/End: Complemental strand, 10770771 - 10770691
Alignment:
Q  101 aagcacagatacggtacaccacatggagaccgacacaccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    |||||| ||||||| |||| ||||||| || ||||| || |||| | ||||||||||||||||| | |||||| ||||||||    
T  10770771 aagcacggatacgg-acacgacatggacactgacacgccaacacaactaataatttgaaaaaatcacataattcagtgtaat 10770691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 19602248 - 19602195
Alignment:
Q  132 gacacaccgacaccaataataatttgaaaaaattatataatttagtgtaatcat 185  Q
    |||||||| ||||  |||||||||||| ||||| |||||||| |||||||||||    
T  19602248 gacacaccaacactgataataatttgagaaaatgatataattcagtgtaatcat 19602195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 34895005 - 34894969
Alignment:
Q  228 gggacacacctgatatgtggagtgtccgtgcttcata 264  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  34895005 gggacacacctaatatgaggagtgtccgtgcttcata 34894969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 34895092 - 34895048
Alignment:
Q  141 acaccaataataatttgaaaaaattatataatttagtgtaatcat 185  Q
    ||||| |||||||||||| ||||||||| |||| |||||||||||    
T  34895092 acacctataataatttgagaaaattatacaattcagtgtaatcat 34895048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 39696063 - 39696013
Alignment:
Q  135 acaccgacaccaataataatttgaaaaaattatataatttagtgtaatcat 185  Q
    ||||||||||| | |||||||||| ||||| ||||||||||||||||||||    
T  39696063 acaccgacaccgacaataatttgagaaaatgatataatttagtgtaatcat 39696013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 2577242 - 2577194
Alignment:
Q  137 accgacaccaataataatttgaaaaaattatataatttagtgtaatcat 185  Q
    ||||||||| |||||||||||| ||||| | ||||||||||||||||||    
T  2577242 accgacaccgataataatttgagaaaatgacataatttagtgtaatcat 2577194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 12927646 - 12927705
Alignment:
Q  132 gacacaccgacaccaataataatttgaaaaaattatataatttagtgtaatcatctatgt 191  Q
    |||||||||||| |  ||||||||||| ||||| ||||||||||||||||| || |||||    
T  12927646 gacacaccgacatcgctaataatttgagaaaatcatataatttagtgtaattatatatgt 12927705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 43554528 - 43554566
Alignment:
Q  147 ataataatttgaaaaaattatataatttagtgtaatcat 185  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  43554528 ataataatttgagaaaatgatataatttagtgtaatcat 43554566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 4344742 - 4344787
Alignment:
Q  140 gacaccaataataatttgaaaaaattatataatttagtgtaatcat 185  Q
    |||||| |||||||||||||||||| | |||||| |||||||||||    
T  4344742 gacaccgataataatttgaaaaaatgacataattcagtgtaatcat 4344787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 182
Target Start/End: Complemental strand, 33035879 - 33035818
Alignment:
Q  121 acatggagaccgacacaccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    ||||||| || || ||||||| |||| |||||||||||| |||| |||||||| ||||||||    
T  33035879 acatggacactgatacaccgataccattaataatttgaataaatcatataattcagtgtaat 33035818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 35017026 - 35017079
Alignment:
Q  129 accgacacaccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    |||||||| |||| |||| ||||||||||| ||||| | |||||||||||||||    
T  35017026 accgacacgccgaaaccactaataatttgagaaaatcacataatttagtgtaat 35017079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 15410515 - 15410439
Alignment:
Q  132 gacacaccgacaccaataataatttgaaaaaattatataatttagtgtaatcatctatgttgttgtcgtgtcaatgt 208  Q
    ||||| ||||||||  ||||||||| | |||||||||| ||| ||||||||||| | ||||| ||| ||||| ||||    
T  15410515 gacacgccgacaccgctaataatttaagaaaattatatgattcagtgtaatcatatgtgttggtgttgtgtcgatgt 15410439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 2362042 - 2361992
Alignment:
Q  132 gacacaccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    |||||||||||||   ||||||||||||||||||| |||||||||||||||    
T  2362042 gacacaccgacacagctaataatttgaaaaaattacataatttagtgtaat 2361992  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 183
Target Start/End: Complemental strand, 50848361 - 50848319
Alignment:
Q  141 acaccaataataatttgaaaaaattatataatttagtgtaatc 183  Q
    |||||||||||||||||||||||| |||||||| |||||||||    
T  50848361 acaccaataataatttgaaaaaatgatataattcagtgtaatc 50848319  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 7424646 - 7424715
Alignment:
Q  116 acaccacatggagaccgacacaccgacaccaataataatttgaaaaaattatataatttagtgtaatcat 185  Q
    |||| ||||||| ||||||||| | ||||| |||||||||| | ||||| |||||||| |||||||||||    
T  7424646 acacgacatggacaccgacacatcaacaccgataataatttaagaaaataatataattgagtgtaatcat 7424715  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 35212791 - 35212742
Alignment:
Q  135 acaccgacaccaataataatttgaaaaaattatataatttagtgtaatca 184  Q
    |||||||||||||||||||||||| ||||||| |||||| | ||||||||    
T  35212791 acaccgacaccaataataatttgagaaaattaaataattgaatgtaatca 35212742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 12895341 - 12895291
Alignment:
Q  132 gacacaccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    ||||| ||||||| ||||||||||||||||||| | ||||||| |||||||    
T  12895341 gacacgccgacacaaataataatttgaaaaaatcacataattttgtgtaat 12895291  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 30838218 - 30838252
Alignment:
Q  148 taataatttgaaaaaattatataatttagtgtaat 182  Q
    ||||||||||| |||||||||||||||||||||||    
T  30838218 taataatttgataaaattatataatttagtgtaat 30838252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 31800548 - 31800495
Alignment:
Q  129 accgacacaccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    ||||||||||||||||   ||||||||| ||||||||| |||||||| ||||||    
T  31800548 accgacacaccgacacagctaataattttaaaaaattaaataatttaatgtaat 31800495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 40742589 - 40742654
Alignment:
Q  138 ccgacaccaataataatttgaaaaaattatataatttagtgtaatcatctatgttgttgtcgtgtc 203  Q
    ||||||||| ||||||||||| ||||| ||||||| ||||||||| || | ||| | |||||||||    
T  40742589 ccgacaccattaataatttgagaaaatcatataatctagtgtaattatatgtgtcgatgtcgtgtc 40742654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 7012055 - 7012111
Alignment:
Q  129 accgacacaccgacaccaataataatttgaaaaaattatataatttagtgtaatcat 185  Q
    |||||||| |||||||| |||||||||||| ||||| | |||||| ||||| |||||    
T  7012055 accgacacgccgacaccgataataatttgagaaaatgacataattcagtgtgatcat 7012111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 21539928 - 21539884
Alignment:
Q  138 ccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    ||||||||| ||||||||| | ||||| |||||||||||||||||    
T  21539928 ccgacaccattaataatttaagaaaatcatataatttagtgtaat 21539884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 24343497 - 24343549
Alignment:
Q  130 ccgacacaccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    ||||||| |||||||  |||||||||||| ||||||| |||||| ||||||||    
T  24343497 ccgacacgccgacacggataataatttgagaaaattacataattcagtgtaat 24343549  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 49659573 - 49659537
Alignment:
Q  149 aataatttgaaaaaattatataatttagtgtaatcat 185  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  49659573 aataatttgagaaaatgatataatttagtgtaatcat 49659537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 55941061 - 55941017
Alignment:
Q  141 acaccaataataatttgaaaaaattatataatttagtgtaatcat 185  Q
    |||||||||||||||| | ||||||| |||||||||| |||||||    
T  55941061 acaccaataataatttaagaaaattacataatttagtataatcat 55941017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 1027 - 1076
Alignment:
Q  132 gacacaccgacaccaataataatttgaaaaaattatataatttagtgtaa 181  Q
    ||||||||||||||  ||||||||||||||||||| |||||| |||||||    
T  1027 gacacaccgacaccgctaataatttgaaaaaattacataattcagtgtaa 1076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 90835 - 90894
Alignment:
Q  132 gacacaccgacaccaataataatttgaaaaaattatataatttagtgtaatcatctatgt 191  Q
    |||||||| |||||| ||||||||||| ||||| |||||||| |||||||| || |||||    
T  90835 gacacaccaacaccattaataatttgagaaaatcatataattcagtgtaattatatatgt 90894  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 17071009 - 17070932
Alignment:
Q  130 ccgacacaccgacaccaataataatttgaaaaaattatataatttagtgtaatcatctatgttgttgtcgtgtcaatgt 208  Q
    |||| |||||||||||  ||||||||| ||||||||||||||||   |||||| || ||| ||| ||||||||||||||    
T  17071009 ccgatacaccgacaccgttaataattt-aaaaaattatataattcgatgtaattatatatattggtgtcgtgtcaatgt 17070932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 17088008 - 17087931
Alignment:
Q  130 ccgacacaccgacaccaataataatttgaaaaaattatataatttagtgtaatcatctatgttgttgtcgtgtcaatgt 208  Q
    |||| |||||||||||  ||||||||| ||||||||||||||||   |||||| || ||||||| ||||||||| ||||    
T  17088008 ccgatacaccgacaccgttaataattt-aaaaaattatataattcgatgtaattatatatgttggtgtcgtgtcgatgt 17087931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 182
Target Start/End: Complemental strand, 18841096 - 18841030
Alignment:
Q  116 acaccacatggagaccgacacaccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    |||| ||||||| || ||||| | ||||| | ||||||||||||||||||| |||||| ||||||||    
T  18841096 acacgacatggacactgacacgctgacacaactaataatttgaaaaaattacataattaagtgtaat 18841030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 20539725 - 20539691
Alignment:
Q  148 taataatttgaaaaaattatataatttagtgtaat 182  Q
    ||||||||||||||||| |||||||||||||||||    
T  20539725 taataatttgaaaaaatcatataatttagtgtaat 20539691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 23354704 - 23354666
Alignment:
Q  147 ataataatttgaaaaaattatataatttagtgtaatcat 185  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  23354704 ataataatttgagaaaatgatataatttagtgtaatcat 23354666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 25544476 - 25544526
Alignment:
Q  135 acaccgacaccaataataatttgaaaaaattatataatttagtgtaatcat 185  Q
    ||||||||||  |||||||||||| ||||| |||||||| |||||||||||    
T  25544476 acaccgacacgtataataatttgagaaaatgatataattcagtgtaatcat 25544526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 40361805 - 40361771
Alignment:
Q  148 taataatttgaaaaaattatataatttagtgtaat 182  Q
    ||||||||||||||||||| |||||||||||||||    
T  40361805 taataatttgaaaaaattacataatttagtgtaat 40361771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 37986771 - 37986824
Alignment:
Q  132 gacacaccgacaccaataataatttgaaaaaattatataatttagtgtaatcat 185  Q
    ||||| |||||||  |||||||||||||||||| ||||| || |||||||||||    
T  37986771 gacacgccgacacagataataatttgaaaaaatgatatatttgagtgtaatcat 37986824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 30335415 - 30335459
Alignment:
Q  138 ccgacaccaataataatttgaaaaaattatataatttagtgtaat 182  Q
    ||||||| | ||||||||||||||||| | |||||||||||||||    
T  30335415 ccgacacaactaataatttgaaaaaatgacataatttagtgtaat 30335459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 33861999 - 33861931
Alignment:
Q  141 acaccaataataatttgaaaaaattatataatttagtgtaatcatctatgttgttgtcgtgtcaatgtc 209  Q
    ||||||| |||||||||| |||| ||||||||||| || |||||| | ||||| | |||||||| ||||    
T  33861999 acaccaacaataatttgagaaaactatataatttaatgcaatcatatgtgttggtatcgtgtcagtgtc 33861931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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